View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21087_high_26 (Length: 389)
Name: NF21087_high_26
Description: NF21087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21087_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 7 - 348
Target Start/End: Complemental strand, 25382315 - 25381972
Alignment:
| Q |
7 |
gagtacaattcatcatcttgttatgggtataaaactgggtttctatgaacatgaggggttgaaaaacccagaagcacaacattattgtattcatcaatca |
106 |
Q |
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| T |
25382315 |
gagtacaattcatcatcttgttatgggtataaaactgggtttctatgaacatgaggggttgaaaaacccagaagcacaacattattgtattcatcaatca |
25382216 |
T |
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| Q |
107 |
tctccatcctctattaccgtgttctgtaaatccagatttaatcatatcaacttgtcttattcatcatcatcatcgtctctaaaacatagctcaacatacc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25382215 |
tctccatcctctattaccgtgttctgtaaatccagatttaatcatatcaact--tcttattcatcatcatcatcgtctctaaaacatagctcaacatacc |
25382118 |
T |
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| Q |
207 |
accgccaccac----tagttgttcataacttggaaagattttgatcgagaacccttttgttactctggaaataaattttaattttagaatctggagttgt |
302 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25382117 |
accgccaccactagttagttgttcataacttggaaagattttgatcgagaacccttttgttactctggaaataaattttaattttagaatctggagttgt |
25382018 |
T |
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| Q |
303 |
tctttcaaaaatagaatctggatctgttaaaatttgttttcacaaa |
348 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25382017 |
tctttcaaaaatagaatctggatctgttaaaatttgttttcacaaa |
25381972 |
T |
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