View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21087_high_29 (Length: 340)
Name: NF21087_high_29
Description: NF21087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21087_high_29 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 148; Significance: 5e-78; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 167 - 330
Target Start/End: Original strand, 43163444 - 43163607
Alignment:
| Q |
167 |
atccacatgattagatttggtaatcttgggttctttctttataacaaaacagaaaggttccatattttgttttcactgctgcattttgatgaggtacatt |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||| |
|
|
| T |
43163444 |
atccacatgattagatttggtaatcttgggttctttctttataacaaaacagaaaggttccatattttgttttaactggtgcattttgatgaggtatatt |
43163543 |
T |
|
| Q |
267 |
tgaaacattctatgctgacttgtattcgtgtgggtttaagtatcgtaacttggaagtacctatg |
330 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43163544 |
tgaaacattgtatgctgacttgtattcgtgtgggtttaagtatcgtaacttggaagtacctatg |
43163607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 43163335 - 43163445
Alignment:
| Q |
19 |
aaggcattgatagattatatcttatgtacaatttaaaatttgagtatattgtgtatatcgtgaaaattgatgattgctattaaatttacaggtctgtgaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||| |
|
|
| T |
43163335 |
aaggcattgatagattatatcttatgtacaatttagaatttgagtatattgtgtatatcgtgaaaattgatgattgcgattatatttacaggtctgggaa |
43163434 |
T |
|
| Q |
119 |
aaccaaggtat |
129 |
Q |
| |
|
||||||||||| |
|
|
| T |
43163435 |
aaccaaggtat |
43163445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 68 - 171
Target Start/End: Original strand, 51464267 - 51464367
Alignment:
| Q |
68 |
tgtgtatatcgtgaaaattgatgattgctattaaatttacaggtctgtgaaaaccaaggtatgcgcgt-aatataccagagggagagagaaagagattga |
166 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||| || |||| ||||||||||||| |||||||||||||| |
|
|
| T |
51464267 |
tgtgtatatcatgaaaattgatgattgccattaaatttacaggtctgggaaaaccaaggtttgtgcgtaaatataccagagg----gagaaagagattga |
51464362 |
T |
|
| Q |
167 |
atcca |
171 |
Q |
| |
|
||||| |
|
|
| T |
51464363 |
atcca |
51464367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 174 - 233
Target Start/End: Original strand, 51464397 - 51464452
Alignment:
| Q |
174 |
tgattagatttggtaatcttgggttctttctttataacaaaacagaaaggttccatattt |
233 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
51464397 |
tgattaggtttggtaatcttgggttct----ttataacaaaacagaaaggttccatattt |
51464452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University