View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21087_high_3 (Length: 795)

Name: NF21087_high_3
Description: NF21087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21087_high_3
NF21087_high_3
[»] chr3 (4 HSPs)
chr3 (242-785)||(33177884-33178428)
chr3 (18-174)||(33177663-33177818)
chr3 (18-167)||(44809912-44810058)
chr3 (155-197)||(44809856-44809898)
[»] chr8 (1 HSPs)
chr8 (39-168)||(20086109-20086238)
[»] chr5 (2 HSPs)
chr5 (18-121)||(17852395-17852498)
chr5 (154-215)||(7250081-7250142)
[»] chr2 (2 HSPs)
chr2 (139-197)||(30497763-30497821)
chr2 (266-338)||(9598419-9598491)
[»] chr7 (1 HSPs)
chr7 (154-197)||(45414325-45414368)
[»] chr4 (1 HSPs)
chr4 (154-215)||(17915184-17915245)
[»] chr1 (2 HSPs)
chr1 (154-215)||(13706137-13706198)
chr1 (157-214)||(15292752-15292809)


Alignment Details
Target: chr3 (Bit Score: 483; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 242 - 785
Target Start/End: Original strand, 33177884 - 33178428
Alignment:
Q  242 caattttcttagttttatcatcattcatcgtcatgttgttacaattttgtgtaaatgtattcattcgtcctatagccatatataccaatctatttttggt 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33177884 caattttcttagttttatcatcattcatcgtcatgttgttacaattttgtgtaaatgtattcattcgtcctatagccatatataccaatctatttttggt 33177983  T
Q  342 tagtatataaaagaattcctccttttatcaaaaaagaaagaagactaattgatccactatacgagtccatgagaaggcgatcacactttgtgggggcaga 441  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  33177984 tagtatataaaagaattcctccttttatcaaaaaagaaagaagaataattgatccactatacgagtccatgagaaggcgatcacactttgtgggggcagg 33178083  T
Q  442 gttgcatgattaatttatttaggaacacaataatttcttgatgatggggctaaaactaatttataagggctaaataaaacattaagagcctgcatgtata 541  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33178084 gttgcatgattaatttatttaggaacacaataatttcttgatgatggggctaaaactaatttataagggctaaataaaacattaagagcctgcatgtata 33178183  T
Q  542 tgacaaaatccatgttgtagtccaaagtattttacaaaacgaggttatagtgacaaccgaatcttttgtttgaataataatataagtgattgtgcaaatt 641  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33178184 tgacaaaatccatgttgtagtccaaagtattttacaaaacgaggttatagtgacaaccgaatcttttgtttgaataataatataagtgattgtgcaaatt 33178283  T
Q  642 aaaagatctatttcagatttgtggatggaggaacataaaataagttaagg-nnnnnnnnnnacaaggaataagttatggttattctgcaccacttttact 740  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||| ||||||||||||| ||||| |||    
T  33178284 aaaagatctatttcagatttgtggatggaggaacataaaataagttaaggttttttattttacaaggaataagttaaggttattctgcacaactttcact 33178383  T
Q  741 ttaatccctttcttactctccacacttaccgtaccatgatgatgt 785  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  33178384 ttaatccgtttcttactctccacacttaccgtaccatgatgatgt 33178428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 33177663 - 33177818
Alignment:
Q  18 agatctatcctggttcatgagtagttgatagtggaaaacacaaacataaaagttgggaatgaaatggtaaagaacaattacagtttttgggtgttttaat 117  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  33177663 agatctatcctggttcatgagtagt-gatagtggaaaacacaaacataaaagttgggaatgaaatggtaaacaacaattacagtttttgggtgttttaat 33177761  T
Q  118 tttatttacagattgcataatgtgaagaaaggaattcagcggcagttaactgccggc 174  Q
    |||||||||||| ||| |||| |||||||||||||||||| ||||||||||||||||    
T  33177762 tttatttacagagtgcgtaatatgaagaaaggaattcagcagcagttaactgccggc 33177818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 18 - 167
Target Start/End: Complemental strand, 44810058 - 44809912
Alignment:
Q  18 agatctatcctggttcatgagtagttgatagtggaaaacacaaacataaaagttgggaatgaaatggtaaagaacaattacagtttttgggtgttttaat 117  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44810058 agatctatcctgattcatgagtagttgatagtggaaaacacaaacataagagttgggaatgaaatggtaaagaacaattacagtttttgggtgttttaat 44809959  T
Q  118 tttatttacagattgcataatgtgaagaaaggaattcagcggcagttaac 167  Q
    |||||||||||| ||    ||||||||||||||||||||||| |||||||    
T  44809958 tttatttacagagtg---tatgtgaagaaaggaattcagcggtagttaac 44809912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 197
Target Start/End: Complemental strand, 44809898 - 44809856
Alignment:
Q  155 agcggcagttaactgccggcggtttctccaacagtagttaact 197  Q
    ||||||||||||||||||||||||| |||||| ||||||||||    
T  44809898 agcggcagttaactgccggcggtttttccaacggtagttaact 44809856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 118; Significance: 9e-60; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 39 - 168
Target Start/End: Original strand, 20086109 - 20086238
Alignment:
Q  39 tagttgatagtggaaaacacaaacataaaagttgggaatgaaatggtaaagaacaattacagtttttgggtgttttaattttatttacagattgcataat 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  20086109 tagttgatagtggaaaacacaaacataaaagttgggaatgaaatggtaaagaacaattacagtttatgggtgttttaattttatttacagagtgcataat 20086208  T
Q  139 gtgaagaaaggaattcagcggcagttaact 168  Q
    ||||||||||||||||||||| ||||||||    
T  20086209 gtgaagaaaggaattcagcggtagttaact 20086238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 17852395 - 17852498
Alignment:
Q  18 agatctatcctggttcatgagtagttgatagtggaaaacacaaacataaaagttgggaatgaaatggtaaagaacaattacagtttttgggtgttttaat 117  Q
    ||||||||| || ||||||||||||||| ||||||||||||||||||||||| || || ||||||||| ||||||||||||||||||||||| |||||||    
T  17852395 agatctatcatgattcatgagtagttgagagtggaaaacacaaacataaaagctgcgagtgaaatggtgaagaacaattacagtttttgggtattttaat 17852494  T
Q  118 ttta 121  Q
    ||||    
T  17852495 ttta 17852498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 7250142 - 7250081
Alignment:
Q  154 cagcggcagttaactgccggcggtttctccaacagtagttaactcccgtcggaggcttttta 215  Q
    |||||||||||||| |||| |||||  ||||||||||||||||| |||  |||| |||||||    
T  7250142 cagcggcagttaaccgccgacggttcttccaacagtagttaactaccgctggagacttttta 7250081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 8e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 30497763 - 30497821
Alignment:
Q  139 gtgaagaaaggaattcagcggcagttaactgccggcggtttctccaacagtagttaact 197  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  30497763 gtgaagaaaggaattcagcggcagttaactgccggcggtttccccaacggtagttaact 30497821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 266 - 338
Target Start/End: Complemental strand, 9598491 - 9598419
Alignment:
Q  266 tcatcgtcatgttgttacaattttgtgtaaatgtattcattcgtcctatagccatatataccaatctattttt 338  Q
    ||||| |||||||| ||||| |||||||||||||||||||||||||||||| |||| || |||||||||||||    
T  9598491 tcatcatcatgttgctacaaatttgtgtaaatgtattcattcgtcctatagtcatacatgccaatctattttt 9598419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 197
Target Start/End: Complemental strand, 45414368 - 45414325
Alignment:
Q  154 cagcggcagttaactgccggcggtttctccaacagtagttaact 197  Q
    ||||||||||||||||||| ||||||||||||| || |||||||    
T  45414368 cagcggcagttaactgccgccggtttctccaacggttgttaact 45414325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 17915245 - 17915184
Alignment:
Q  154 cagcggcagttaactgccggcggtttctccaacagtagttaactcccgtcggaggcttttta 215  Q
    |||||||||||||||| ||||| ||| |||||| |||||||||| |||  || |||||||||    
T  17915245 cagcggcagttaactgtcggcgatttttccaacggtagttaactaccgctgggggcttttta 17915184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 13706198 - 13706137
Alignment:
Q  154 cagcggcagttaactgccggcggtttctccaacagtagttaactcccgtcggaggcttttta 215  Q
    |||| ||||||||||| |||||||||  ||||| |||||||||| |||| || |||||||||    
T  13706198 cagcagcagttaactgtcggcggttttcccaacggtagttaactaccgttgggggcttttta 13706137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 214
Target Start/End: Original strand, 15292752 - 15292809
Alignment:
Q  157 cggcagttaactgccggcggtttctccaacagtagttaactcccgtcggaggcttttt 214  Q
    |||||||||||||| ||||||||| ||||| ||||||||||  ||  |||||||||||    
T  15292752 cggcagttaactgctggcggtttccccaacggtagttaactatcgctggaggcttttt 15292809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University