View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21087_high_41 (Length: 277)
Name: NF21087_high_41
Description: NF21087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21087_high_41 |
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| [»] scaffold0710 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 260
Target Start/End: Original strand, 51768113 - 51768356
Alignment:
| Q |
17 |
cacagaaggacataattataatcacaggtttttgggtgtcttcaaatatcagaaaactttcaaatatatcgaaaaggcgatttctcaagtttagatgaat |
116 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51768113 |
cacaaaaggacataattataatcacaagtttttgggtgtcttcaaatatcagaaaactttcaaatatatcgaaaaggcgatttctcaagtttagatgaat |
51768212 |
T |
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| Q |
117 |
attgtcacaagtcctcagctggaatctccatgttgccatgacgaacattaagattcaatagattatgatcctttgtggcttaactgaaagtttttgtttt |
216 |
Q |
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| T |
51768213 |
attgtcacaagtcctcagctggaatctccatgttgccatgacgaacattaagattcaatagattatgatcatttgtggcttaactgaaagtttttgtttt |
51768312 |
T |
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| Q |
217 |
tatagttgaattatcattcattagtggattgaaggatcggattg |
260 |
Q |
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| T |
51768313 |
tatagttgaattatcattcattagtggattgaaggatcggattg |
51768356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 51804397 - 51804453
Alignment:
| Q |
49 |
tgggtgtcttcaaatatcagaaaactttcaaatatatcgaaaaggcgatttctcaag |
105 |
Q |
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| T |
51804397 |
tgggtgtcctaaaatatcagaaaactttcaaatatatcgagcaggcaatttctcaag |
51804453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 51780628 - 51780686
Alignment:
| Q |
49 |
tgggtgtcttcaaatatcagaaaactttcaaatatatcgaaaaggcgatttctcaagtt |
107 |
Q |
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| T |
51780628 |
tgggtgtcttaaaatatcagaaaactttcaaatatctcgagcaggcaatttcacaagtt |
51780686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 118
Target Start/End: Original strand, 51772786 - 51772861
Alignment:
| Q |
43 |
ggtttttgggtgtcttcaaatatcagaaaactttcaaatatatcgaaaaggcgatttctcaagtttagatgaatat |
118 |
Q |
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| T |
51772786 |
ggtttatgggtgtctttaattatcataaaacattcaactatctcgagaaagcaatttctcaagcttagatgaatat |
51772861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 51808357 - 51808401
Alignment:
| Q |
60 |
aaatatcagaaaactttcaaatatatcgaaaaggcgatttctcaa |
104 |
Q |
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| T |
51808357 |
aaatatcagaaaactttcaaatatctcgagcaggcaatttctcaa |
51808401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 7272 - 7327
Alignment:
| Q |
49 |
tgggtgtcttcaaatatcagaaaactttcaaatatatcgaaaaggcgatttctcaa |
104 |
Q |
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| T |
7272 |
tgggtgtcttaaaatatcagaaaactttcaaatatctcgagcaggcaatttctcaa |
7327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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