View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21087_high_42 (Length: 273)
Name: NF21087_high_42
Description: NF21087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21087_high_42 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 38121027 - 38121280
Alignment:
| Q |
1 |
cataggcagccgcaataggattgatatgcggaaaaggcaaatacacgctgtgcacaacaatcttcacattgcggatgacgtcagcaaccttaactctcac |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38121027 |
cataagcagccgcaataggattgatatgcggaaaaggcaaatacacgctgtgcacaacaatcttcacattgcggatgacgtcagcaaccttaactctcac |
38121126 |
T |
|
| Q |
101 |
atagttaatcctcatcggcgctgatgtcactcctccgccggaagtagtgatcagaagcggctgacctcgctccaatgtaggcagagcagttccaaccgga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38121127 |
atagttaatcctcatcggcgctgatgtcactcctccgccggaagtagtgatcagaagcggctgacctcgctccaatgtaggcagagcagttccaaccgga |
38121226 |
T |
|
| Q |
201 |
agcttctcaagatcggcgattgacaagtaatgattcggtatgatatggaatcgc |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38121227 |
agcttctcaagatcggcgattgacaagtaatgattcggtatgatatggaatcgc |
38121280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 38609096 - 38608843
Alignment:
| Q |
1 |
cataggcagccgcaataggattgatatgcggaaaaggcaaatacacgctgtgcacaacaatcttcacattgcggatgacgtcagcaaccttaactctcac |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38609096 |
cataagcagccgcaataggattgatatgcggaaaaggcaaatacacactgtgcacaactatcttcacattgcggatgacgtcagcaaccttaactctcac |
38608997 |
T |
|
| Q |
101 |
atagttaatcctcatcggcgctgatgtcactcctccgccggaagtagtgatcagaagcggctgacctcgctccaatgtaggcagagcagttccaaccgga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
38608996 |
atagttaatcctcatcggcgctgatgtcactcctccgccggaagtagtgatcagaagcggctgacctcgctccaatgtaggcagagcagttccaactgga |
38608897 |
T |
|
| Q |
201 |
agcttctcaagatcggcgattgacaagtaatgattcggtatgatatggaatcgc |
254 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
38608896 |
agcttctcaagatcggcgatcgacaagtaataattcggtatgatatggaatcgc |
38608843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 38793879 - 38793626
Alignment:
| Q |
1 |
cataggcagccgcaataggattgatatgcggaaaaggcaaatacacgctgtgcacaacaatcttcacattgcggatgacgtcagcaaccttaactctcac |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38793879 |
cataagcagccgcaataggattgatatgcggaaaaggcaaatacacactgtgcacaactatcttcacattgcggatgacgtcagcaaccttaactctcac |
38793780 |
T |
|
| Q |
101 |
atagttaatcctcatcggcgctgatgtcactcctccgccggaagtagtgatcagaagcggctgacctcgctccaatgtaggcagagcagttccaaccgga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
38793779 |
atagttaatcctcatcggcgctgatgtcactcctccgccggaagtagtgatcagaagcggctgacctcgctccaatgtaggcagagcagttccaactgga |
38793680 |
T |
|
| Q |
201 |
agcttctcaagatcggcgattgacaagtaatgattcggtatgatatggaatcgc |
254 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
38793679 |
agcttctcaagatcggcgatcgacaagtaataattcggtatgatatggaatcgc |
38793626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 28730601 - 28730854
Alignment:
| Q |
1 |
cataggcagccgcaataggattgatatgcggaaaaggcaaatacacgctgtgcacaacaatcttcacattgcggatgacgtcagcaaccttaactctcac |
100 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||| |||||||||||||||||||| || || || |
|
|
| T |
28730601 |
cataagcatccgcaataggattgatatgcggaaaaggcaaatacacactatgcacaactatcttcacattacggatgacgtcagcaaccttcaccctaac |
28730700 |
T |
|
| Q |
101 |
atagttaatcctcatcggcgctgatgtcactcctccgccggaagtagtgatcagaagcggctgacctcgctccaatgtaggcagagcagttccaaccgga |
200 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
28730701 |
atagttaatcctcatcggtgctaatgtcactcctccaccggaagtagtgatcagaagcggctgacctcgctccaatgtaggcagagcagttccaactgga |
28730800 |
T |
|
| Q |
201 |
agcttctcaagatcggcgattgacaagtaatgattcggtatgatatggaatcgc |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28730801 |
agcttctcaagatcggcgattgacaagtaacgattcggtatgatatggaatcgc |
28730854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University