View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21087_high_46 (Length: 264)

Name: NF21087_high_46
Description: NF21087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21087_high_46
NF21087_high_46
[»] chr8 (24 HSPs)
chr8 (17-224)||(26125858-26126076)
chr8 (197-264)||(26125788-26125855)
chr8 (172-225)||(3097162-3097215)
chr8 (172-225)||(3467633-3467686)
chr8 (172-225)||(44926955-44927008)
chr8 (173-225)||(25697917-25697969)
chr8 (173-224)||(30085596-30085647)
chr8 (171-225)||(22936748-22936802)
chr8 (171-225)||(38114544-38114598)
chr8 (175-224)||(26243225-26243274)
chr8 (174-225)||(36113999-36114050)
chr8 (173-224)||(36121502-36121553)
chr8 (173-225)||(35615809-35615861)
chr8 (181-224)||(40742260-40742303)
chr8 (171-225)||(15206796-15206850)
chr8 (171-225)||(28425427-28425481)
chr8 (171-225)||(29023323-29023377)
chr8 (171-225)||(33626989-33627043)
chr8 (175-225)||(42143323-42143373)
chr8 (175-224)||(24897547-24897596)
chr8 (174-225)||(4941739-4941790)
chr8 (174-225)||(27649845-27649896)
chr8 (171-226)||(45147220-45147275)
chr8 (172-225)||(3465396-3465449)
[»] chr6 (15 HSPs)
chr6 (171-225)||(33898960-33899014)
chr6 (172-225)||(13739297-13739350)
chr6 (172-225)||(13744797-13744850)
chr6 (175-225)||(17829957-17830007)
chr6 (172-225)||(6208019-6208072)
chr6 (173-225)||(29399750-29399802)
chr6 (172-225)||(1312395-1312448)
chr6 (173-225)||(10826183-10826235)
chr6 (171-210)||(16548216-16548255)
chr6 (226-264)||(3213554-3213592)
chr6 (171-225)||(21254834-21254888)
chr6 (171-225)||(29409206-29409260)
chr6 (172-225)||(15151461-15151514)
chr6 (175-220)||(16442324-16442369)
chr6 (189-225)||(699648-699684)
[»] chr3 (29 HSPs)
chr3 (173-225)||(10853224-10853276)
chr3 (173-225)||(26519756-26519808)
chr3 (171-225)||(50664850-50664904)
chr3 (171-224)||(3348336-3348389)
chr3 (179-225)||(35930830-35930876)
chr3 (171-225)||(44939371-44939425)
chr3 (176-225)||(35930880-35930929)
chr3 (172-225)||(55154593-55154646)
chr3 (173-225)||(42318421-42318473)
chr3 (171-225)||(4984673-4984727)
chr3 (171-225)||(10334230-10334284)
chr3 (171-225)||(23496409-23496463)
chr3 (172-217)||(20813245-20813290)
chr3 (172-225)||(31618368-31618421)
chr3 (172-225)||(38125398-38125451)
chr3 (172-225)||(38172263-38172316)
chr3 (172-225)||(48189398-48189451)
chr3 (173-217)||(38340905-38340949)
chr3 (175-225)||(8424689-8424739)
chr3 (172-225)||(15511332-15511385)
chr3 (173-226)||(30809917-30809970)
chr3 (169-225)||(52966762-52966818)
chr3 (226-264)||(27748708-27748746)
chr3 (171-225)||(30811487-30811541)
chr3 (175-225)||(31084284-31084334)
chr3 (226-264)||(36150284-36150322)
chr3 (171-225)||(42475801-42475855)
chr3 (172-225)||(35425425-35425477)
chr3 (173-225)||(53074994-53075046)
[»] chr5 (26 HSPs)
chr5 (172-225)||(35760295-35760348)
chr5 (171-225)||(8049003-8049057)
chr5 (171-225)||(32030820-32030874)
chr5 (172-225)||(39987920-39987973)
chr5 (173-225)||(3667960-3668012)
chr5 (171-225)||(24045936-24045990)
chr5 (172-225)||(5710339-5710392)
chr5 (171-224)||(7385884-7385937)
chr5 (171-224)||(40885318-40885371)
chr5 (173-225)||(41834998-41835050)
chr5 (171-225)||(32454642-32454697)
chr5 (171-225)||(10058180-10058234)
chr5 (171-225)||(40495310-40495364)
chr5 (171-225)||(40791022-40791076)
chr5 (172-225)||(22482295-22482348)
chr5 (172-225)||(42146413-42146466)
chr5 (173-225)||(33953856-33953908)
chr5 (174-225)||(13253038-13253089)
chr5 (172-225)||(2430250-2430303)
chr5 (176-225)||(7715046-7715095)
chr5 (169-225)||(27021234-27021290)
chr5 (190-225)||(41740564-41740599)
chr5 (226-264)||(5257149-5257187)
chr5 (174-224)||(9275439-9275489)
chr5 (171-225)||(35847842-35847896)
chr5 (226-264)||(41334571-41334609)
[»] chr4 (41 HSPs)
chr4 (173-225)||(14072579-14072631)
chr4 (171-225)||(9889290-9889344)
chr4 (171-225)||(28987095-28987149)
chr4 (171-225)||(29149262-29149316)
chr4 (172-225)||(32238015-32238068)
chr4 (172-224)||(46830025-46830077)
chr4 (174-225)||(43781477-43781528)
chr4 (171-225)||(39187811-39187865)
chr4 (171-225)||(54150603-54150657)
chr4 (176-225)||(9893788-9893837)
chr4 (173-225)||(6138577-6138629)
chr4 (172-224)||(19592187-19592239)
chr4 (173-225)||(26426072-26426124)
chr4 (172-220)||(48550299-48550347)
chr4 (174-225)||(39636862-39636913)
chr4 (175-225)||(30842208-30842258)
chr4 (172-225)||(15603437-15603490)
chr4 (173-225)||(26651805-26651857)
chr4 (169-225)||(41866231-41866287)
chr4 (171-226)||(48550397-48550452)
chr4 (171-225)||(14076091-14076145)
chr4 (171-225)||(14564101-14564155)
chr4 (172-226)||(15619675-15619729)
chr4 (171-225)||(16566382-16566436)
chr4 (172-225)||(49519807-49519863)
chr4 (171-225)||(51923017-51923071)
chr4 (171-225)||(53532054-53532108)
chr4 (171-225)||(54735606-54735660)
chr4 (172-217)||(26459852-26459897)
chr4 (223-264)||(27893747-27893788)
chr4 (176-225)||(54153121-54153170)
chr4 (173-225)||(25312792-25312844)
chr4 (173-217)||(31520328-31520372)
chr4 (226-264)||(27864718-27864756)
chr4 (171-225)||(43772078-43772132)
chr4 (172-225)||(13167602-13167655)
chr4 (176-225)||(45779970-45780019)
chr4 (172-225)||(48556630-48556683)
chr4 (197-225)||(48407679-48407707)
chr4 (165-225)||(54488682-54488742)
chr4 (197-225)||(55638736-55638764)
[»] chr2 (24 HSPs)
chr2 (173-225)||(2213607-2213659)
chr2 (171-221)||(2215357-2215407)
chr2 (172-225)||(36548300-36548353)
chr2 (173-225)||(28127242-28127294)
chr2 (171-225)||(9988454-9988508)
chr2 (172-225)||(1944993-1945046)
chr2 (173-225)||(7472629-7472681)
chr2 (174-225)||(32502086-32502137)
chr2 (172-225)||(8170413-8170466)
chr2 (172-225)||(44619015-44619068)
chr2 (174-225)||(30007509-30007560)
chr2 (170-225)||(31562639-31562694)
chr2 (171-218)||(36312384-36312431)
chr2 (172-218)||(5916196-5916242)
chr2 (175-225)||(34433263-34433313)
chr2 (170-212)||(43436263-43436305)
chr2 (176-225)||(14821263-14821312)
chr2 (173-225)||(2213748-2213800)
chr2 (173-225)||(25747837-25747889)
chr2 (173-225)||(39141425-39141477)
chr2 (171-226)||(27911491-27911546)
chr2 (178-225)||(42515936-42515983)
chr2 (173-225)||(31224781-31224833)
chr2 (171-223)||(42089481-42089533)
[»] scaffold0381 (1 HSPs)
scaffold0381 (171-225)||(9202-9256)
[»] chr1 (34 HSPs)
chr1 (172-225)||(1199943-1199996)
chr1 (172-225)||(6166225-6166278)
chr1 (172-225)||(43728835-43728888)
chr1 (172-225)||(50406246-50406299)
chr1 (172-224)||(42850176-42850228)
chr1 (174-225)||(11023289-11023340)
chr1 (171-225)||(10470705-10470759)
chr1 (171-224)||(12247536-12247589)
chr1 (171-220)||(26058362-26058411)
chr1 (172-225)||(50977297-50977350)
chr1 (178-225)||(45710164-45710211)
chr1 (162-225)||(47123502-47123565)
chr1 (171-225)||(13056113-13056167)
chr1 (171-225)||(35569158-35569212)
chr1 (171-224)||(13931739-13931791)
chr1 (172-225)||(20800234-20800287)
chr1 (171-220)||(27801608-27801657)
chr1 (172-225)||(31223490-31223543)
chr1 (172-225)||(48511024-48511077)
chr1 (174-225)||(25230122-25230173)
chr1 (171-225)||(35536187-35536241)
chr1 (172-225)||(7826311-7826364)
chr1 (168-225)||(12468328-12468384)
chr1 (173-225)||(6464723-6464775)
chr1 (175-225)||(6061258-6061308)
chr1 (175-225)||(36205307-36205357)
chr1 (171-225)||(40352506-40352560)
chr1 (226-264)||(43570994-43571032)
chr1 (173-226)||(4369776-4369829)
chr1 (172-225)||(34718567-34718620)
chr1 (227-264)||(37814932-37814969)
chr1 (172-212)||(291704-291744)
chr1 (172-220)||(7765241-7765289)
chr1 (189-225)||(49242956-49242992)
[»] chr7 (25 HSPs)
chr7 (171-225)||(3622402-3622456)
chr7 (171-225)||(10371900-10371954)
chr7 (171-225)||(37639543-37639597)
chr7 (171-224)||(37562684-37562737)
chr7 (172-225)||(48459823-48459876)
chr7 (173-225)||(19097510-19097562)
chr7 (173-220)||(41715775-41715822)
chr7 (171-225)||(39977665-39977719)
chr7 (175-225)||(43631642-43631692)
chr7 (172-225)||(34010452-34010504)
chr7 (168-225)||(34365921-34365978)
chr7 (173-225)||(3342903-3342955)
chr7 (168-225)||(3375603-3375660)
chr7 (175-220)||(39391083-39391128)
chr7 (176-225)||(46541713-46541762)
chr7 (172-218)||(32187060-32187106)
chr7 (171-225)||(34010903-34010957)
chr7 (174-220)||(38230186-38230232)
chr7 (175-225)||(47022032-47022082)
chr7 (175-225)||(47217487-47217537)
chr7 (175-225)||(48134692-48134742)
chr7 (176-225)||(386428-386477)
chr7 (174-223)||(9456219-9456268)
chr7 (177-218)||(12632031-12632072)
chr7 (232-264)||(9216455-9216487)
[»] scaffold0369 (1 HSPs)
scaffold0369 (172-225)||(8541-8594)
[»] scaffold0394 (1 HSPs)
scaffold0394 (171-225)||(5785-5839)
[»] scaffold0005 (1 HSPs)
scaffold0005 (171-225)||(253220-253274)
[»] scaffold0983 (1 HSPs)
scaffold0983 (173-225)||(2225-2277)
[»] scaffold0217 (1 HSPs)
scaffold0217 (171-225)||(1982-2036)
[»] scaffold0007 (1 HSPs)
scaffold0007 (173-225)||(29080-29132)


Alignment Details
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 17 - 224
Target Start/End: Complemental strand, 26126076 - 26125858
Alignment:
Q  17 acaagcttaccgaccatgaagacatggccaaacagtcaaaagtttattagttatcatgaatttcatactcattctctgtgaatctagttgcg-------- 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||            
T  26126076 acaagcttaccgaccatgaagacatggccaaacagtcaaaagtttactagttatcatgaatttcatactcattctctgtgaatctagttgcgacatttgg 26125977  T
Q  109 -acatggatttgcaaattctggttagtt--atttttagttttcattgtaaagaataaatttgatgtagtgtgtgtttggtatagcggtggtgagaattga 205  Q
     |||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||| |    
T  26125976 gacatggatttgcaaattctggttagtttattttttagttttcattgtaaagaataaatttgatgcagtgtgtctttggtacagcggtggtgagaattaa 26125877  T
Q  206 ttttgatagaattgagttt 224  Q
    |||||||||||||||||||    
T  26125876 ttttgatagaattgagttt 26125858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 197 - 264
Target Start/End: Complemental strand, 26125855 - 26125788
Alignment:
Q  197 gagaattgattttgatagaattgagtttggagtggtgatatatataccaccccatgtggcaatacacc 264  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  26125855 gagaattgattttgatagaattgagtttgaagtggtgatatatgtaccaccccatgtggcaatacacc 26125788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 3097162 - 3097215
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  3097162 agtgtgtgtttggtatagcagtggtgagaattaattttgatagaattgagtttg 3097215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 3467686 - 3467633
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  3467686 agtgtgtgtttggtatggcggtggcgagaattgattttgatagaattgagtttg 3467633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 44927008 - 44926955
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  44927008 agtgtgtgtttggtatggcggtggcgagaattgattttgatagaattgagtttg 44926955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 25697917 - 25697969
Alignment:
Q  173 gtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  25697917 gtgtgtgcttggtatagcggtggagagaattgattttgatagaattgagtttg 25697969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 30085596 - 30085647
Alignment:
Q  173 gtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagttt 224  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  30085596 gtgtgtgtttggtatagcggcggtgagaattgattttgatataattgagttt 30085647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 22936748 - 22936802
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||    
T  22936748 tagtgtgtgtttggtatggcggtggcgagaattgattttgatagaattaagtttg 22936802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 38114598 - 38114544
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||||| | ||||||||||||||| |||||||||||||||||||||    
T  38114598 tagtgtgtgtttggtttggcggtggtgagaatttattttgatagaattgagtttg 38114544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 26243274 - 26243225
Alignment:
Q  175 gtgtgtttggtatagcggtggtgagaattgattttgatagaattgagttt 224  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  26243274 gtgtgtttggtatagcggcagtgagaattgattttgatagaattgagttt 26243225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 225
Target Start/End: Original strand, 36113999 - 36114050
Alignment:
Q  174 tgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||||  ||| ||||||||||||||||||||||||||||||||    
T  36113999 tgtgtgtttggtatgacggcggtgagaattgattttgatagaattgagtttg 36114050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 36121502 - 36121553
Alignment:
Q  173 gtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagttt 224  Q
    |||||||||||||| |||||||  ||||||||||||||||||||||||||||    
T  36121502 gtgtgtgtttggtacagcggtgtcgagaattgattttgatagaattgagttt 36121553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 35615861 - 35615809
Alignment:
Q  173 gtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||| ||||||||  |||||||| |||||||||||||||||||||||||||||    
T  35615861 gtgtctgtttggttcagcggtggagagaattgattttgatagaattgagtttg 35615809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 40742260 - 40742303
Alignment:
Q  181 ttggtatagcggtggtgagaattgattttgatagaattgagttt 224  Q
    |||||||||||  |||||||||||||||||||||||||||||||    
T  40742260 ttggtatagcgacggtgagaattgattttgatagaattgagttt 40742303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 15206850 - 15206796
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||||  || ||||| ||||||| |||||||||||||||||||||    
T  15206850 tagtgtgtgtttggttcagtggtggagagaattaattttgatagaattgagtttg 15206796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 28425427 - 28425481
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||||||  |||||| || ||||||||||||||||||||| ||||    
T  28425427 tagtgtgtgtttggtatgacggtggcgaaaattgattttgatagaattgattttg 28425481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 29023377 - 29023323
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||| ||||| | ||||| || ||||||||||||||||||||||||||    
T  29023377 tagtgtgtgttcggtatggtggtggcgaaaattgattttgatagaattgagtttg 29023323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 33626989 - 33627043
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||||   ||||||| | |||||||||||||||||||||||||||    
T  33626989 tagtgtgtgtttggttcggcggtggagggaattgattttgatagaattgagtttg 33627043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 225
Target Start/End: Original strand, 42143323 - 42143373
Alignment:
Q  175 gtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||| ||||||| ||||||||||| ||||| |||||||||||    
T  42143323 gtgtgtttggtatggcggtggcgagaattgattatgatataattgagtttg 42143373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 24897547 - 24897596
Alignment:
Q  175 gtgtgtttggtatagcggtggtgagaattgattttgatagaattgagttt 224  Q
    ||||||||||||| |||| ||| |||||||||||||||| ||||||||||    
T  24897547 gtgtgtttggtatggcggcggtaagaattgattttgataaaattgagttt 24897596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 225
Target Start/End: Original strand, 4941739 - 4941790
Alignment:
Q  174 tgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||| |||||||  |||||||||| ||||| |||||||||||    
T  4941739 tgtgtgtttggtatggcggtggctagaattgattctgatataattgagtttg 4941790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 27649896 - 27649845
Alignment:
Q  174 tgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||   ||||||  |||||||||||||||||||||||||||||    
T  27649896 tgtgtgtttggttgggcggtgacgagaattgattttgatagaattgagtttg 27649845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 45147220 - 45147275
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttgg 226  Q
    |||||||||||||||   |||| |||||||||||||||||||||||| || |||||    
T  45147220 tagtgtgtgtttggttcggcggcggtgagaattgattttgatagaatcgaatttgg 45147275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 3465396 - 3465449
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||||   ||||||   ||||||||||||||||||||||||||||    
T  3465396 agtgtgtgtttggttctgcggtgagtagaattgattttgatagaattgagtttg 3465449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 33898960 - 33899014
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33898960 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 33899014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 13739350 - 13739297
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  13739350 agtgtgtgtttggtatggcggtggcgagaattgattttgatagaattgagtttg 13739297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 13744850 - 13744797
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  13744850 agtgtgtgtttggtatggcggtggcgagaattgattttgatagaattgagtttg 13744797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 225
Target Start/End: Original strand, 17829957 - 17830007
Alignment:
Q  175 gtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  17829957 gtgtgtttggtatagctgtggggagaattgattttgatagaattgagtttg 17830007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 6208019 - 6208072
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||| ||||    
T  6208019 agtgtgtgtttggtatagcggtggcgataattgattttgatagaattgattttg 6208072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 29399750 - 29399802
Alignment:
Q  173 gtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||| |||||||| | ||||||| |||||||||||||||||||||||||||||    
T  29399750 gtgtatgtttggtttggcggtggagagaattgattttgatagaattgagtttg 29399802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 1312395 - 1312448
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||||  |||||||| || |||||||||||||||||| |||||||    
T  1312395 agtgtgtgtttggttcagcggtggagaaaattgattttgatagaatcgagtttg 1312448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 10826235 - 10826183
Alignment:
Q  173 gtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||| | |||| |||||||||| ||||||||| |||||||||||    
T  10826235 gtgtgtgtttggtttggcggcggtgagaattaattttgataaaattgagtttg 10826183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 210
Target Start/End: Complemental strand, 16548255 - 16548216
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttg 210  Q
    ||||||||||||||||| ||||||| ||||||||||||||    
T  16548255 tagtgtgtgtttggtatggcggtggggagaattgattttg 16548216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 264
Target Start/End: Complemental strand, 3213592 - 3213554
Alignment:
Q  226 gagtggtgatatatataccaccccatgtggcaatacacc 264  Q
    ||||||||||| || ||||||||||||||||||||||||    
T  3213592 gagtggtgatacatgtaccaccccatgtggcaatacacc 3213554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 21254834 - 21254888
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||||    ||||||||| |||||| |||||||||||||||||||    
T  21254834 tagtgtgtgtttggttccacggtggtgataattgagtttgatagaattgagtttg 21254888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 29409206 - 29409260
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||| ||||||||  |||||| || |||||||||| |||||||||||||||    
T  29409206 tagtgtgtttttggtatgacggtggcgaaaattgattttaatagaattgagtttg 29409260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 15151461 - 15151514
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||||   ||||||   ||||||||||||||||||||||||||||    
T  15151461 agtgtgtgtttggttctgcggtgagtagaattgattttgatagaattgagtttg 15151514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 16442324 - 16442369
Alignment:
Q  175 gtgtgtttggtatagcggtggtgagaattgattttgatagaattga 220  Q
    ||||||||||| | ||||||| ||||||||||||||| ||||||||    
T  16442324 gtgtgtttggtttggcggtggggagaattgattttgagagaattga 16442369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 225
Target Start/End: Complemental strand, 699684 - 699648
Alignment:
Q  189 gcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||| | |||||||||||||||||||||||||||    
T  699684 gcggtggagggaattgattttgatagaattgagtttg 699648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 10853224 - 10853276
Alignment:
Q  173 gtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10853224 gtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 10853276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 26519808 - 26519756
Alignment:
Q  173 gtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  26519808 gtgtgtgtttggtatagcggtggggagaattgattttgatagaattgagtttg 26519756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 50664904 - 50664850
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  50664904 tagtgtgtgtttggtatggcggtggcgagaattgattttgatagaattgagtttg 50664850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 3348389 - 3348336
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagttt 224  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  3348389 tagtgtgtgtttggcatagcggtggcgagaattgattttgatagaattgagttt 3348336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 35930876 - 35930830
Alignment:
Q  179 gtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  35930876 gtttggtatatcggtggtgagaattgattttgatagaattgagtttg 35930830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 44939371 - 44939425
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||| ||||    
T  44939371 tagtgtgtgtttggtatagcggtggcgataattgattttgatagaattgaatttg 44939425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 35930929 - 35930880
Alignment:
Q  176 tgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||    
T  35930929 tgtgtttggtatactggtggtgagaattgattttgatagaattgagtttg 35930880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 55154646 - 55154593
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||||| || |||| |||||||||||||||||||||||||||||    
T  55154646 agtgtgtgtttggtatggcagtggcgagaattgattttgatagaattgagtttg 55154593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 42318473 - 42318421
Alignment:
Q  173 gtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||||||||||||  || ||||||||||||||||||||||||||    
T  42318473 gtgtgtgtttggtatagcggtgacgataattgattttgatagaattgagtttg 42318421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 4984727 - 4984673
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||||||| ||||||| ||||||||||||||||| |||||| ||||    
T  4984727 tagtgtgtgtttggtatggcggtggggagaattgattttgatataattgaatttg 4984673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 10334284 - 10334230
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||| ||| ||||||  |||||||||||||||||||||||||||||    
T  10334284 tagtgtgtgtttgatatggcggtgacgagaattgattttgatagaattgagtttg 10334230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 23496463 - 23496409
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||||||| |||| |  |||||||||||||||||||||||||||||    
T  23496463 tagtgtgtgtttggtatggcggcgaggagaattgattttgatagaattgagtttg 23496409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 217
Target Start/End: Complemental strand, 20813290 - 20813245
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtgagaattgattttgatagaat 217  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||    
T  20813290 agtgtgtgtttggtatatcggtggagagaattgattttgatagaat 20813245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 31618368 - 31618421
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||||||  ||||||  ||||||||||||||||||||||||||||    
T  31618368 agtgtgtgtttggtatgacggtgggaagaattgattttgatagaattgagtttg 31618421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 38125398 - 38125451
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||||| ||||||  |||||||||||||||||||||||| ||||    
T  38125398 agtgtgtgtttggtatggcggtgacgagaattgattttgatagaattgaatttg 38125451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 38172263 - 38172316
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||| | ||||||| ||||||||||||| |||||||||||||||    
T  38172263 agtgtgtgtttggtttggcggtggggagaattgattttaatagaattgagtttg 38172316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 48189398 - 48189451
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||||  ||||||| || ||||||||||||||||||||||||||    
T  48189398 agtgtgtgtttggtagggcggtggcgataattgattttgatagaattgagtttg 48189451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 38340949 - 38340905
Alignment:
Q  173 gtgtgtgtttggtatagcggtggtgagaattgattttgatagaat 217  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||    
T  38340949 gtgtgtgtttggtatggcgttggtgagaattgattttgatagaat 38340905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 225
Target Start/End: Original strand, 8424689 - 8424739
Alignment:
Q  175 gtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||| ||||||||||||| | |||||| |||||||||||||||||||    
T  8424689 gtgtgtttagtatagcggtggtcataattgaatttgatagaattgagtttg 8424739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 15511332 - 15511385
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||||| ||||||| || |||||||||||||||||  |||||||    
T  15511332 agtgtgtgtttggtatggcggtggcgataattgattttgatagaacggagtttg 15511385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 30809917 - 30809970
Alignment:
Q  173 gtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttgg 226  Q
    |||| |||||||||| |||| || ||||||||||||||||| ||||||||||||    
T  30809917 gtgtatgtttggtatggcggcggggagaattgattttgataaaattgagtttgg 30809970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 52966762 - 52966818
Alignment:
Q  169 tgtagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||||||| | | ||||| || ||||||||||||||||||||| ||||    
T  52966762 tgtagtgtgtgtttggtttggaggtggagaaaattgattttgatagaattgattttg 52966818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 264
Target Start/End: Complemental strand, 27748746 - 27748708
Alignment:
Q  226 gagtggtgatatatataccaccccatgtggcaatacacc 264  Q
    ||||||||||| || ||||||||||||||||||||||||    
T  27748746 gagtggtgatacatgtaccaccccatgtggcaatacacc 27748708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 30811487 - 30811541
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||||||  ||||||  ||||||||||||||||| |||||| ||||    
T  30811487 tagtgtgtgtttggtagggcggtgacgagaattgattttgatataattgaatttg 30811541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 31084334 - 31084284
Alignment:
Q  175 gtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||| | ||||||| ||||||||||||||| |||||||| ||||    
T  31084334 gtgtgtttggtttggcggtggcgagaattgattttgaaagaattgattttg 31084284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 264
Target Start/End: Complemental strand, 36150322 - 36150284
Alignment:
Q  226 gagtggtgatatatataccaccccatgtggcaatacacc 264  Q
    ||||||||||| || ||||||||||||||||||||||||    
T  36150322 gagtggtgatacatgtaccaccccatgtggcaatacacc 36150284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 42475855 - 42475801
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||| ||||||| | ||||||  ||||||||||||| |||||||||||||||    
T  42475855 tagtgtgcgtttggtttggcggtgacgagaattgatttttatagaattgagtttg 42475801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 35425477 - 35425425
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||| ||  ||||||  |||||||||||||||||||||||||||||    
T  35425477 agtgtgtgtttg-tagggcggtgacgagaattgattttgatagaattgagtttg 35425425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 53075046 - 53074994
Alignment:
Q  173 gtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||| ||  |||| ||||| |||||||||||||| |||||||||||    
T  53075046 gtgtgtgtttgatacggcggcggtgaaaattgattttgatataattgagtttg 53074994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 35760348 - 35760295
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  35760348 agtgtgtgtttggtatagcggtggggagaattgattttgatagaattgagtttg 35760295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 8049003 - 8049057
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  8049003 tagtgtgtctttggtatagcggcggtgagaattgattttgatagaattgagtttg 8049057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 32030874 - 32030820
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  32030874 tagtgtgtgtttggtatagtggtggagagaattgattttgatagaattgagtttg 32030820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 39987920 - 39987973
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  39987920 agtgtgtgtttggtataccggcggtgagaattgattttgatagaattgagtttg 39987973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 3668012 - 3667960
Alignment:
Q  173 gtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  3668012 gtgtgtgtttggtatagtggtggagagaattgattttgatagaattgagtttg 3667960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 24045990 - 24045936
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  24045990 tagtatgtgtttggtatggcggtggtgagaattgattttgatagaattgaatttg 24045936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 5710339 - 5710392
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||| |||||||    
T  5710339 agtgtgtgtttggtatggcggtggcgagaattgattttgatagaatggagtttg 5710392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 7385884 - 7385937
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagttt 224  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||| |||||    
T  7385884 tagtgtgtgtttagtatagcggcggtgagaattgattttgatagaattaagttt 7385937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 40885371 - 40885318
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagttt 224  Q
    ||||||||||||||||| |||||||||| ||||||||||| |||||||||||||    
T  40885371 tagtgtgtgtttggtatggcggtggtgaaaattgattttgttagaattgagttt 40885318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 41835050 - 41834998
Alignment:
Q  173 gtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||| ||||||    
T  41835050 gtgtgtgtttggtatggcggtggggagaattgattttgatagaattcagtttg 41834998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 32454697 - 32454642
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttga-tagaattgagtttg 225  Q
    ||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||    
T  32454697 tagtgtgtgtttggtatggcggtggcgagaattgattttgattagaattgagtttg 32454642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 10058234 - 10058180
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||| |||| ||||||| ||||||||||||||||| |||||||||||    
T  10058234 tagtgtgtgtttagtatggcggtggggagaattgattttgatataattgagtttg 10058180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 40495310 - 40495364
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||||||| |||| ||  ||||||||||||||||||||||||||||    
T  40495310 tagtgtgtgtttggtatggcggcgggaagaattgattttgatagaattgagtttg 40495364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 40791022 - 40791076
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||||||  ||| || |||||||||||||||||||||||||||||    
T  40791022 tagtgtgtgtttggtatcacggcggggagaattgattttgatagaattgagtttg 40791076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 22482348 - 22482295
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||||| |||| || |||||||||||||||||||||||| ||||    
T  22482348 agtgtgtgtttggtatggcggcggggagaattgattttgatagaattgattttg 22482295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 42146466 - 42146413
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||||||  ||| || |||||||||||||||||||||||||||||    
T  42146466 agtgtgtgtttggtatgacggcggggagaattgattttgatagaattgagtttg 42146413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 33953856 - 33953908
Alignment:
Q  173 gtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||||| || ||||||| ||||||||||| ||||||||||||||    
T  33953856 gtgtgtgtttggtatggcagtggtgaaaattgattttggtagaattgagtttg 33953908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 225
Target Start/End: Original strand, 13253038 - 13253089
Alignment:
Q  174 tgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||   ||||||| |||||||||||||||||||||||||||||    
T  13253038 tgtgtgtttggttgggcggtggcgagaattgattttgatagaattgagtttg 13253089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 2430250 - 2430303
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||| |||||||| ||||||| ||||||| |||||||| ||||||||||||    
T  2430250 agtgtgtatttggtatggcggtggcgagaattcattttgatggaattgagtttg 2430303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 7715095 - 7715046
Alignment:
Q  176 tgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||| |||| |||||||| | ||||||||||||||||||||||||||    
T  7715095 tgtgttttgtatggcggtggtaaaaattgattttgatagaattgagtttg 7715046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 27021290 - 27021234
Alignment:
Q  169 tgtagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||| |||||||||| | |||||||| |||| ||||||||||| |||||||||||    
T  27021290 tgtagtatgtgtttggtttggcggtggttagaactgattttgatataattgagtttg 27021234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 225
Target Start/End: Original strand, 41740564 - 41740599
Alignment:
Q  190 cggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||| |||||||||||||||||||||||||||||    
T  41740564 cggtggggagaattgattttgatagaattgagtttg 41740599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 264
Target Start/End: Complemental strand, 5257187 - 5257149
Alignment:
Q  226 gagtggtgatatatataccaccccatgtggcaatacacc 264  Q
    ||||||||||| || ||||||||||||||||||||||||    
T  5257187 gagtggtgatacatgtaccaccccatgtggcaatacacc 5257149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 9275439 - 9275489
Alignment:
Q  174 tgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagttt 224  Q
    |||||||||||| | ||||||| || |||||||||||||| ||||||||||    
T  9275439 tgtgtgtttggtttggcggtggggaaaattgattttgataaaattgagttt 9275489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 35847842 - 35847896
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||||   ||||||   ||||||||||||||||||||||||||||    
T  35847842 tagtgtgtgtttggttctgcggtgagtagaattgattttgatagaattgagtttg 35847896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 264
Target Start/End: Original strand, 41334571 - 41334609
Alignment:
Q  226 gagtggtgatatatataccaccccatgtggcaatacacc 264  Q
    ||||||||||| || ||||||||||||||||||||||||    
T  41334571 gagtggtgatacatgtaccaccccatgtggcaatacacc 41334609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 14072631 - 14072579
Alignment:
Q  173 gtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  14072631 gtgtgtgtttggtatggcggtggtgagaattgattttgatagaattgagtttg 14072579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 9889290 - 9889344
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9889290 tagtatgtgtttggtatggcggtggtgagaattgattttgatagaattgagtttg 9889344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 28987149 - 28987095
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  28987149 tagtgtgtgtttggtatggcggtggtgaaaattgattttgatagaattgagtttg 28987095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 29149262 - 29149316
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  29149262 tagtgtgtatttggtatagcggtggggagaattgattttgatagaattgagtttg 29149316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 32238015 - 32238068
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  32238015 agtgtgtgtttggtatagcggtggcgataattgattttgatagaattgagtttg 32238068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 46830025 - 46830077
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagttt 224  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  46830025 agtgtgtgtttggtatggcggtggcgagaattgattttgatagaattgagttt 46830077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 174 - 225
Target Start/End: Original strand, 43781477 - 43781528
Alignment:
Q  174 tgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  43781477 tgtgtgtttggtatggcggtggcgagaattgattttgatagaattgagtttg 43781528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 39187865 - 39187811
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||||| | ||||||| |||||||||||||||||||||||||||||    
T  39187865 tagtgtgtgtttggtttggcggtggagagaattgattttgatagaattgagtttg 39187811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 54150657 - 54150603
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||||||| |||||||  ||||||||||||||||||||||||||||    
T  54150657 tagtgtgtgtttggtatggcggtggcaagaattgattttgatagaattgagtttg 54150603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 9893837 - 9893788
Alignment:
Q  176 tgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  9893837 tgtgtttggtatggcggtggtgagaattgattttgatagaattgaatttg 9893788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 6138577 - 6138629
Alignment:
Q  173 gtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||| | ||||||| |||||||||||||||||||||||||||||    
T  6138577 gtgtgtgtttggtttggcggtggggagaattgattttgatagaattgagtttg 6138629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 19592187 - 19592239
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagttt 224  Q
    |||||||||||| ||| ||||||| ||||||||||||||||||||||||||||    
T  19592187 agtgtgtgtttgatatggcggtggggagaattgattttgatagaattgagttt 19592239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 26426072 - 26426124
Alignment:
Q  173 gtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||||  |||||| |||||||||||||||||||||||||||||    
T  26426072 gtgtgtgtttggtatgacggtggggagaattgattttgatagaattgagtttg 26426124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 48550347 - 48550299
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtgagaattgattttgatagaattga 220  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  48550347 agtgtgtgtttggtatggcggtggcgagaattgattttgatagaattga 48550299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 39636913 - 39636862
Alignment:
Q  174 tgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||||  |||||| |||||||||||||||||||||||||||||    
T  39636913 tgtgtgtttggtatgacggtggcgagaattgattttgatagaattgagtttg 39636862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 30842258 - 30842208
Alignment:
Q  175 gtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||| ||||||  |||||||||||||||||||||||||||||    
T  30842258 gtgtgtttggtatggcggtgacgagaattgattttgatagaattgagtttg 30842208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 15603490 - 15603437
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||| |  |||||| |||||||||||||||||||||||||||||    
T  15603490 agtgtgtgtttggtttgacggtggggagaattgattttgatagaattgagtttg 15603437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 26651805 - 26651857
Alignment:
Q  173 gtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||||| |||| || |||||||||||||||||||||| ||||||    
T  26651805 gtgtgtgtttggtatggcggcggcgagaattgattttgatagaattaagtttg 26651857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 41866287 - 41866231
Alignment:
Q  169 tgtagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||||||| | ||||||| || |||||||||||||| |||||||||||    
T  41866287 tgtagtgtgtgtttggtttggcggtggcgataattgattttgataaaattgagtttg 41866231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 48550397 - 48550452
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttgg 226  Q
    ||||||||||||||| | |||||||  ||||||||||||||||||||||| |||||    
T  48550397 tagtgtgtgtttggtttggcggtgggaagaattgattttgatagaattgattttgg 48550452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 14076145 - 14076091
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||| ||||||| || | |||| ||||||||||||||||||||||||||||||||    
T  14076145 tagtatgtgtttagtttggcggcggtgagaattgattttgatagaattgagtttg 14076091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 14564101 - 14564155
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||||   |||| || |||||||||||||||||||||||||||||    
T  14564101 tagtgtgtgtttggttgggcggcggagagaattgattttgatagaattgagtttg 14564155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 15619729 - 15619675
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttgg 226  Q
    ||||||||||||||||||||| || ||||||||| ||||| |||||||| |||||    
T  15619729 agtgtgtgtttggtatagcggcggggagaattgagtttgagagaattgattttgg 15619675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 16566436 - 16566382
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||||||| || |  | |||||||||||||||||||||||||||||    
T  16566436 tagtgtgtgtttggtatggcagcagggagaattgattttgatagaattgagtttg 16566382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 49519863 - 49519807
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtg---agaattgattttgatagaattgagtttg 225  Q
    |||||||||||||||| |||||||||   ||||||| ||||||||||||||||||||    
T  49519863 agtgtgtgtttggtatggcggtggtggtgagaattggttttgatagaattgagtttg 49519807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 51923071 - 51923017
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||||||| |||| |  |||||||||||||| ||||||||||||||    
T  51923071 tagtgtgtgtttggtatggcggcgacgagaattgattttgttagaattgagtttg 51923017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 53532108 - 53532054
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||| ||||||||||   ||||||||||||||||||||||||| |||||||||||    
T  53532108 tagtatgtgtttggttcggcggtggtgagaattgattttgataaaattgagtttg 53532054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 54735606 - 54735660
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||| |||| ||||| | |||| ||||||||||||||||||||||||||||||||    
T  54735606 tagtatgtgcttggtttggcggcggtgagaattgattttgatagaattgagtttg 54735660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 217
Target Start/End: Original strand, 26459852 - 26459897
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtgagaattgattttgatagaat 217  Q
    |||||||||||||||| ||||||| ||||||| |||||||||||||    
T  26459852 agtgtgtgtttggtatggcggtggcgagaattaattttgatagaat 26459897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 223 - 264
Target Start/End: Original strand, 27893747 - 27893788
Alignment:
Q  223 ttggagtggtgatatatataccaccccatgtggcaatacacc 264  Q
    |||||||||||||| || ||||||||||||||||||||||||    
T  27893747 ttggagtggtgatacatgtaccaccccatgtggcaatacacc 27893788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 54153170 - 54153121
Alignment:
Q  176 tgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||||||||| || |||||||||| ||| |||||||||||    
T  54153170 tgtgtttggtatagcggtggcgataattgattttaatataattgagtttg 54153121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 25312844 - 25312792
Alignment:
Q  173 gtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||| | |||||   |||||||||||||||||||||||||||||    
T  25312844 gtgtgtgtttggtttggcggtaacgagaattgattttgatagaattgagtttg 25312792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 31520328 - 31520372
Alignment:
Q  173 gtgtgtgtttggtatagcggtggtgagaattgattttgatagaat 217  Q
    ||||||||||||||||||| ||| |||||||||||||| ||||||    
T  31520328 gtgtgtgtttggtatagcgatggcgagaattgattttggtagaat 31520372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 264
Target Start/End: Complemental strand, 27864756 - 27864718
Alignment:
Q  226 gagtggtgatatatataccaccccatgtggcaatacacc 264  Q
    ||||||||||| || ||||||||||||||||||||||||    
T  27864756 gagtggtgatacatgtaccaccccatgtggcaatacacc 27864718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 43772078 - 43772132
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||||| | | ||||  || ||||||||||||||||||||||||||    
T  43772078 tagtgtgtgtttggtttggtggtgacgataattgattttgatagaattgagtttg 43772132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 13167655 - 13167602
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||||| ||||| |  | |||||||||||||| |||||||||||    
T  13167655 agtgtgtgtttggtatggcggtaggaaaaattgattttgatataattgagtttg 13167602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 45779970 - 45780019
Alignment:
Q  176 tgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||| | |||| | ||||||||||||| ||||||||||||||||    
T  45779970 tgtgtttggtttggcggcgatgagaattgatttcgatagaattgagtttg 45780019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 48556683 - 48556630
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||| |||||||  ||||||||  | ||||||||||||||||||||||||||    
T  48556683 agtgtgcgtttggttcagcggtggaaataattgattttgatagaattgagtttg 48556630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 225
Target Start/End: Original strand, 48407679 - 48407707
Alignment:
Q  197 gagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||||||||||||||||||    
T  48407679 gagaattgattttgatagaattgagtttg 48407707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 54488742 - 54488682
Alignment:
Q  165 ttgatgtagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||| ||||||||||||||   ||||||| || |||||||||||| |||||||| ||||    
T  54488742 ttgatgaagtgtgtgtttggttctgcggtggagataattgattttgacagaattgattttg 54488682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 225
Target Start/End: Original strand, 55638736 - 55638764
Alignment:
Q  197 gagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||||||||||||||||||    
T  55638736 gagaattgattttgatagaattgagtttg 55638764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 2213659 - 2213607
Alignment:
Q  173 gtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2213659 gtgtgtgtttggtatagcggtggggagaattgattttgatagaattgagtttg 2213607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 2215407 - 2215357
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgag 221  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2215407 tagtgtgtgtttggtatagcggttgtgagaattgattttgatagaattgag 2215357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 36548353 - 36548300
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  36548353 agtgtgtgtttggtatggcggtggtgaaaattgattttgatagaattgagtttg 36548300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 28127242 - 28127294
Alignment:
Q  173 gtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  28127242 gtgtgtgtttggtatagcggtggggagaattgattttgatagaatttagtttg 28127294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 9988454 - 9988508
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||||| | ||||||| |||||||||||||||||||||||||||||    
T  9988454 tagtgtgtgtttggtttggcggtggggagaattgattttgatagaattgagtttg 9988508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 1944993 - 1945046
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||||| |||| || |||||||||||||||||||||||||||||    
T  1944993 agtgtgtgtttggtatggcggcggggagaattgattttgatagaattgagtttg 1945046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 7472629 - 7472681
Alignment:
Q  173 gtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||||  |||||| |||||||||||||||||||||||||||||    
T  7472629 gtgtgtgtttggtatgacggtggcgagaattgattttgatagaattgagtttg 7472681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 32502137 - 32502086
Alignment:
Q  174 tgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||| ||||| |||| ||||||||||||||||||||||||||    
T  32502137 tgtgtgtttggtatggcggtcgtgaaaattgattttgatagaattgagtttg 32502086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 8170466 - 8170413
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||||  ||||||| ||||||| |||||||||||||||||||||    
T  8170466 agtgtgtgtttggtagggcggtggcgagaattaattttgatagaattgagtttg 8170413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 44619015 - 44619068
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||| |||| || ||| |||||||||||||||||||||||||||||    
T  44619015 agtgtgtgtttgatataccgatggcgagaattgattttgatagaattgagtttg 44619068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 225
Target Start/End: Original strand, 30007509 - 30007560
Alignment:
Q  174 tgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||| |||||| || |||| |||||||||||||||||||||||||||||    
T  30007509 tgtgtgtatggtatggctgtggggagaattgattttgatagaattgagtttg 30007560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 225
Target Start/End: Original strand, 31562639 - 31562694
Alignment:
Q  170 gtagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||| ||||||||||| | ||||| ||||||||||||||||| |||||||||||    
T  31562639 gtagtgcgtgtttggtatggtggtggcgagaattgattttgataaaattgagtttg 31562694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 218
Target Start/End: Complemental strand, 36312431 - 36312384
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaatt 218  Q
    ||||||||||||||||| |||| || ||||||||||||||||||||||    
T  36312431 tagtgtgtgtttggtatggcggcggggagaattgattttgatagaatt 36312384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 218
Target Start/End: Original strand, 5916196 - 5916242
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtgagaattgattttgatagaatt 218  Q
    |||||||||||||||| |||| || ||||||||||||||||||||||    
T  5916196 agtgtgtgtttggtatggcggcggggagaattgattttgatagaatt 5916242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 225
Target Start/End: Original strand, 34433263 - 34433313
Alignment:
Q  175 gtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||  |||||||  |||||||||||||||||||||||||||||    
T  34433263 gtgtgtttggttcagcggtgaagagaattgattttgatagaattgagtttg 34433313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 170 - 212
Target Start/End: Original strand, 43436263 - 43436305
Alignment:
Q  170 gtagtgtgtgtttggtatagcggtggtgagaattgattttgat 212  Q
    |||||||||||||||||| ||||||| ||||||||||||||||    
T  43436263 gtagtgtgtgtttggtatggcggtggcgagaattgattttgat 43436305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 14821312 - 14821263
Alignment:
Q  176 tgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||||||||  || |||| |||||||||||||||||||||    
T  14821312 tgtgtttggtatagcggtgacgataattaattttgatagaattgagtttg 14821263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 2213800 - 2213748
Alignment:
Q  173 gtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||||| || |  | |||||||||||||||||||||||||||||    
T  2213800 gtgtgtgtttggtatggcagatgagagaattgattttgatagaattgagtttg 2213748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 25747837 - 25747889
Alignment:
Q  173 gtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||   |||||||||| |||||| |||||||||||||||||||    
T  25747837 gtgtgtgtttggttccgcggtggtgataattgagtttgatagaattgagtttg 25747889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 39141425 - 39141477
Alignment:
Q  173 gtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||   ||||||| ||||||||||||||||| |||||||||||    
T  39141425 gtgtgtgtttggttgggcggtggcgagaattgattttgatataattgagtttg 39141477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 27911546 - 27911491
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttgg 226  Q
    |||||||||||||||   |||| || || |||||||||||||||||||||||||||    
T  27911546 tagtgtgtgtttggttcggcggcggcgataattgattttgatagaattgagtttgg 27911491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 42515936 - 42515983
Alignment:
Q  178 tgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||| ||||||| || |||||||||||||| |||||||||||    
T  42515936 tgtttggtatggcggtggagaaaattgattttgatataattgagtttg 42515983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 31224833 - 31224781
Alignment:
Q  173 gtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||| |||||| | ||||||  || ||||||||||||||||||||||||||    
T  31224833 gtgtgtatttggtttggcggtgacgaaaattgattttgatagaattgagtttg 31224781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 42089481 - 42089533
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtt 223  Q
    ||||||||||||| | | |||||| ||| ||||||||||||||||||| ||||    
T  42089481 tagtgtgtgtttgatttggcggtgatgaaaattgattttgatagaattaagtt 42089533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 9256 - 9202
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9256 tagtatgtgtttggtatggcggtggtgagaattgattttgatagaattgagtttg 9202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 1199996 - 1199943
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  1199996 agtgtgtgtttggtatggcggtggcgagaattgattttgatagaattgagtttg 1199943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 6166278 - 6166225
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  6166278 agtgtgtgtttggtatcgcggtggtgagaattgattttgatagaattgaatttg 6166225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 43728835 - 43728888
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  43728835 agtgtgtgtttggtatagcgatggagagaattgattttgatagaattgagtttg 43728888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 50406299 - 50406246
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  50406299 agtgtgtgtttggtatagcggtggcgagaattgattttgataaaattgagtttg 50406246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 42850176 - 42850228
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagttt 224  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  42850176 agtgtgtgtttggtatggcggtggcgagaattgattttgatagaattgagttt 42850228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 174 - 225
Target Start/End: Original strand, 11023289 - 11023340
Alignment:
Q  174 tgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  11023289 tgtgtgtttggtatggcggtggtgaaaattgattttgatagaattgagtttg 11023340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 10470759 - 10470705
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||||||  ||||||| |||||||||||||||||||||||||||||    
T  10470759 tagtgtgtgtttggtagggcggtggcgagaattgattttgatagaattgagtttg 10470705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 12247589 - 12247536
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagttt 224  Q
    |||||||||||||||||||||||| ||| |||||||||| ||||||||||||||    
T  12247589 tagtgtgtgtttggtatagcggtgatgaaaattgattttaatagaattgagttt 12247536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 26058411 - 26058362
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattga 220  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  26058411 tagtgtgtgtttggtatggcggtggcgagaattgattttgatagaattga 26058362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 50977297 - 50977350
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||| |||||||    
T  50977297 agtgtgtgtttggtatggcggtggcgagaattgattttgatagaatggagtttg 50977350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 45710211 - 45710164
Alignment:
Q  178 tgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||    
T  45710211 tgtttggtatagcggtggcgataattgattttgatagaattgagtttg 45710164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 225
Target Start/End: Complemental strand, 47123565 - 47123502
Alignment:
Q  162 aatttgatgtagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||| | ||||||||||||||||| |||||||  | ||||||||||||||||||||||||||    
T  47123565 aatttgttttagtgtgtgtttggtatggcggtggcaaaaattgattttgatagaattgagtttg 47123502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 13056167 - 13056113
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||||||| ||||||| || |||||||||||||||||| |||||||    
T  13056167 tagtgtgtgtttggtatggcggtggcgataattgattttgatagaatggagtttg 13056113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 35569158 - 35569212
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||||||| |||| || |||||||||||||||||||||||| ||||    
T  35569158 tagtgtgtgtttggtatggcggcggggagaattgattttgatagaattgattttg 35569212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 13931791 - 13931739
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagttt 224  Q
    ||||||||||||||||| ||||||||| || |||||||||||||||||||||||    
T  13931791 tagtgtgtgtttggtatggcggtggtggga-ttgattttgatagaattgagttt 13931739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 20800234 - 20800287
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||||| |||| || |||||||||||||||||||||||| ||||    
T  20800234 agtgtgtgtttggtatggcggcggggagaattgattttgatagaattgattttg 20800287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 27801608 - 27801657
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattga 220  Q
    |||||||||||||||||  |||||| ||||||||||||||||||||||||    
T  27801608 tagtgtgtgtttggtatgacggtggcgagaattgattttgatagaattga 27801657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 31223543 - 31223490
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||| | ||||||| ||||||||||||| |||||||||||||||    
T  31223543 agtgtgtgtttggtttggcggtggggagaattgattttaatagaattgagtttg 31223490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 48511077 - 48511024
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||||| |||| || |||||||||||||||| ||||||||||||    
T  48511077 agtgtgtgtttggtatggcggcggcgagaattgattttgattgaattgagtttg 48511024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 25230173 - 25230122
Alignment:
Q  174 tgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||||  |||||| |||||||||||||||||||| ||||||||    
T  25230173 tgtgtgtttggtatgacggtggcgagaattgattttgatagaactgagtttg 25230122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 35536241 - 35536187
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||||||| |||||| ||| |||| ||||| |||||||||||||||    
T  35536241 tagtgtgtgtttggtatggcggtgatgaaaattaattttaatagaattgagtttg 35536187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 7826311 - 7826364
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||| | ||||||| || ||||||||||||||||||||| ||||    
T  7826311 agtgtgtgtttggtttggcggtggagaaaattgattttgatagaattgattttg 7826364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 12468384 - 12468328
Alignment:
Q  168 atgtagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||||||||| |||| ||  |||||||| |||||||||||||||||||    
T  12468384 atgtagtgtgtgtttggtatggcggcgggaagaattga-tttgatagaattgagtttg 12468328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 6464775 - 6464723
Alignment:
Q  173 gtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||| |||||||||||| ||||  ||||||||||||||||| |||||||||||    
T  6464775 gtgtttgtttggtatagtggtgacgagaattgattttgatataattgagtttg 6464723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 6061308 - 6061258
Alignment:
Q  175 gtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||| |  ||||||||| ||||||||||||||||||||| ||||    
T  6061308 gtgtgtttggtttgacggtggtgaaaattgattttgatagaattgaatttg 6061258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 36205357 - 36205307
Alignment:
Q  175 gtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||  |||||||||||||||||||| |  ||||||||||||    
T  36205357 gtgtgtttggtatgacggtggtgagaattgattttaacggaattgagtttg 36205307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 40352560 - 40352506
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||||   ||||||  |||||||||||||||||||||||| ||||    
T  40352560 tagtgtgtgtttggttgtgcggtgaggagaattgattttgatagaattgattttg 40352506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 264
Target Start/End: Original strand, 43570994 - 43571032
Alignment:
Q  226 gagtggtgatatatataccaccccatgtggcaatacacc 264  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  43570994 gagtgatgatatatgtaccaccccatgtggcaatacacc 43571032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 4369776 - 4369829
Alignment:
Q  173 gtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttgg 226  Q
    ||||||||||||| | ||||||| || |||||||||||| |||||||| |||||    
T  4369776 gtgtgtgtttggtttggcggtggagaaaattgattttgagagaattgattttgg 4369829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 34718620 - 34718567
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||| |  ||||||  | ||||||||||||||||||||||||||    
T  34718620 agtgtgtgtttggtttgacggtggaaaaaattgattttgatagaattgagtttg 34718567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 227 - 264
Target Start/End: Complemental strand, 37814969 - 37814932
Alignment:
Q  227 agtggtgatatatataccaccccatgtggcaatacacc 264  Q
    |||||||||| || ||||||||||||||||||||||||    
T  37814969 agtggtgatacatgtaccaccccatgtggcaatacacc 37814932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 291704 - 291744
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtgagaattgattttgat 212  Q
    |||||||||||||||| | ||||| ||||||||||||||||    
T  291704 agtgtgtgtttggtatggtggtggcgagaattgattttgat 291744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 7765241 - 7765289
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtgagaattgattttgatagaattga 220  Q
    ||||||||||||||   ||||||  ||||||||||||||||||||||||    
T  7765241 agtgtgtgtttggttatgcggtgacgagaattgattttgatagaattga 7765289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 225
Target Start/End: Original strand, 49242956 - 49242992
Alignment:
Q  189 gcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  49242956 gcggtggtgagaattaattttgatataattgagtttg 49242992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 3622402 - 3622456
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||    
T  3622402 tagtgtgtgtttgttatggcggtggcgagaattgattttgatagaattgagtttg 3622456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 10371900 - 10371954
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||||| | |||||| |||||||||||||||||||||||||||||    
T  10371900 tagtgtgtgtttggtaaaacggtggggagaattgattttgatagaattgagtttg 10371954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 37639597 - 37639543
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||||||| |||| || |||||||||||||||||||||||||||||    
T  37639597 tagtgtgtgtttggtatggcggcggggagaattgattttgatagaattgagtttg 37639543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 37562737 - 37562684
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagttt 224  Q
    ||||||||||||||| | ||||||| ||||||||||||||||||||||||||||    
T  37562737 tagtgtgtgtttggtttggcggtggggagaattgattttgatagaattgagttt 37562684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 48459876 - 48459823
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||||||  || |||||||||||||||||||||||||||||||||    
T  48459876 agtgtgtgtttggtatgacgttggtgagaattgattttgatagaattgagtttg 48459823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 19097562 - 19097510
Alignment:
Q  173 gtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||||| |||| |||||||||| |||||||||||||||||||||    
T  19097562 gtgtgtgtttggtatggcggcggtgagaattaattttgatagaattgagtttg 19097510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 41715822 - 41715775
Alignment:
Q  173 gtgtgtgtttggtatagcggtggtgagaattgattttgatagaattga 220  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  41715822 gtgtgtgtttggtatggcggtggcgagaattgattttgatagaattga 41715775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 39977719 - 39977665
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||||||| ||||||| || ||||||||||||||||||| ||||||    
T  39977719 tagtgtgtgtttggtatggcggtggcgataattgattttgatagaatttagtttg 39977665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 225
Target Start/End: Original strand, 43631642 - 43631692
Alignment:
Q  175 gtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||| ||||||| || ||||||||||||||||||||||||||    
T  43631642 gtgtgtttggtatggcggtggggataattgattttgatagaattgagtttg 43631692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 34010504 - 34010452
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||| | ||||||| |||||||||||||||||||||||||||||    
T  34010504 agtgtgtgtttggt-tggcggtggcgagaattgattttgatagaattgagtttg 34010452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 34365921 - 34365978
Alignment:
Q  168 atgtagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||||||||| |||||||  |||||||||||||||| ||| |||||||    
T  34365921 atgtagtgtgtgtttggtatggcggtggctagaattgattttgatataatggagtttg 34365978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 3342955 - 3342903
Alignment:
Q  173 gtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||| | ||||||| ||||||| |||||||||||||||||||||    
T  3342955 gtgtgtgtttggtttggcggtggggagaattaattttgatagaattgagtttg 3342903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 3375660 - 3375603
Alignment:
Q  168 atgtagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||| |||||||||||  | | ||| |||||||||||||||||||||||||||||    
T  3375660 atgtagtatgtgtttggtacggtgatggagagaattgattttgatagaattgagtttg 3375603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 39391083 - 39391128
Alignment:
Q  175 gtgtgtttggtatagcggtggtgagaattgattttgatagaattga 220  Q
    ||||||||||||| ||||||| || |||||||||||||||||||||    
T  39391083 gtgtgtttggtatggcggtggcgaaaattgattttgatagaattga 39391128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 46541762 - 46541713
Alignment:
Q  176 tgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||| | |||||||| | ||||||||||||||||||||||||||    
T  46541762 tgtgtttggtttggcggtggttaaaattgattttgatagaattgagtttg 46541713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 218
Target Start/End: Complemental strand, 32187106 - 32187060
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtgagaattgattttgatagaatt 218  Q
    ||||| ||||||||||  |||||| ||||||||||||||||||||||    
T  32187106 agtgtatgtttggtatgacggtggcgagaattgattttgatagaatt 32187060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 34010903 - 34010957
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||| |||||||||| | || | ||||| ||||||||||||||||||||||||||    
T  34010903 tagtatgtgtttggtttggcagcggtgataattgattttgatagaattgagtttg 34010957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 220
Target Start/End: Complemental strand, 38230232 - 38230186
Alignment:
Q  174 tgtgtgtttggtatagcggtggtgagaattgattttgatagaattga 220  Q
    |||||||||||||| ||||  | ||||||||||||||||||||||||    
T  38230232 tgtgtgtttggtatggcggccgagagaattgattttgatagaattga 38230186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 47022082 - 47022032
Alignment:
Q  175 gtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||   ||||| || ||||||||||||||||||||||||||    
T  47022082 gtgtgtttggtatgatggtggggataattgattttgatagaattgagtttg 47022032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 225
Target Start/End: Original strand, 47217487 - 47217537
Alignment:
Q  175 gtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||   |||| ||||| ||||||||||||||||||||||||||    
T  47217487 gtgtgtttggttcggcggcggtgaaaattgattttgatagaattgagtttg 47217537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 48134742 - 48134692
Alignment:
Q  175 gtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||| ||||| | || |||| |||||||||||||||||||||    
T  48134742 gtgtgtttggtatggcggttgcgaaaattaattttgatagaattgagtttg 48134692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 386428 - 386477
Alignment:
Q  176 tgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||| | |||||||| | |||||||||||||| |||||||||||    
T  386428 tgtgtttggtttggcggtggttaaaattgattttgatataattgagtttg 386477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 9456268 - 9456219
Alignment:
Q  174 tgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtt 223  Q
    ||||| |||||||  ||||| |||||||||||||||||||||||| ||||    
T  9456268 tgtgtctttggtacggcggtagtgagaattgattttgatagaattaagtt 9456219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 12632031 - 12632072
Alignment:
Q  177 gtgtttggtatagcggtggtgagaattgattttgatagaatt 218  Q
    ||||||||| | ||||||| ||||||||||||||||||||||    
T  12632031 gtgtttggtttcgcggtggagagaattgattttgatagaatt 12632072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 264
Target Start/End: Complemental strand, 9216487 - 9216455
Alignment:
Q  232 tgatatatataccaccccatgtggcaatacacc 264  Q
    ||||||||||||||||||||||| |||||||||    
T  9216487 tgatatatataccaccccatgtgacaatacacc 9216455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 8594 - 8541
Alignment:
Q  172 agtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||||| |||||||  | ||||||||||||||||||||||||||    
T  8594 agtgtgtgtttggtatggcggtgggaataattgattttgatagaattgagtttg 8541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 5785 - 5839
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||||||| | ||| | ||||||||||||||||| |||||||||||    
T  5785 tagtgtgtgtttggtatggtggtagggagaattgattttgatataattgagtttg 5839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 253274 - 253220
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||||||||||||||   |||| || |||||||||||||||||||||||||||||    
T  253274 tagtgtgtgtttggttgggcggcggagagaattgattttgatagaattgagtttg 253220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0983 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0983
Description:

Target: scaffold0983; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 2225 - 2277
Alignment:
Q  173 gtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    |||| |||||||||| ||||||| || |||||||||||| |||||||||||||    
T  2225 gtgtctgtttggtatggcggtggcgaaaattgattttgacagaattgagtttg 2277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 1982 - 2036
Alignment:
Q  171 tagtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||||  | ||||||  || ||||||||||||||||||||||||||    
T  1982 tagtgtgtgtttggattggcggtgtcgataattgattttgatagaattgagtttg 2036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 29080 - 29132
Alignment:
Q  173 gtgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttg 225  Q
    ||||||||||||| | | |||||| | ||||||||||||||||||| ||||||    
T  29080 gtgtgtgtttggtttggtggtggtaataattgattttgatagaattaagtttg 29132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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