View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21087_high_63 (Length: 228)

Name: NF21087_high_63
Description: NF21087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21087_high_63
NF21087_high_63
[»] chr3 (1 HSPs)
chr3 (3-213)||(45597021-45597230)
[»] chr4 (1 HSPs)
chr4 (27-93)||(13510142-13510208)
[»] chr8 (1 HSPs)
chr8 (27-93)||(42794309-42794375)
[»] chr2 (1 HSPs)
chr2 (27-93)||(19398106-19398172)
[»] chr5 (1 HSPs)
chr5 (21-139)||(27152865-27152983)


Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 3 - 213
Target Start/End: Complemental strand, 45597230 - 45597021
Alignment:
Q  3 tattttgactcctttagttttgacagttgaatgattcaagtggggatccagactatgagaaactatggaagccacctccaaatcatgggtttcaaccctg 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  45597230 tattttgactcctttagttttgacagttgaatgattcaagtggggatccagactatgagaaactatggaagccacctccaaatcatgggtttctaccctg 45597131  T
Q  103 tacaaagcctactcctaactacactagtaagaaactttaaaccttatgttgcaatttgtaagtggtgtatttgtgtttattgtacttaaatgaaatgtta 202  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| | |||| |||||||||||||||||||||||||||||||    
T  45597130 tacaaagcctactcctaactacactagtaagaaacttttaactttatgttgcaatttgtaa-tcgtgtgtttgtgtttattgtacttaaatgaaatgtta 45597032  T
Q  203 aatgtttctcc 213  Q
    |||||||||||    
T  45597031 aatgtttctcc 45597021  T

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Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 27 - 93
Target Start/End: Complemental strand, 13510208 - 13510142
Alignment:
Q  27 agttgaatgattcaagtggggatccagactatgagaaactatggaagccacctccaaatcatgggtt 93  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  13510208 agttgaatgattcaaatggggatccagactatgagaaactgtggaagccacctccaaatcatgggtt 13510142  T

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Target: chr8 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 27 - 93
Target Start/End: Complemental strand, 42794375 - 42794309
Alignment:
Q  27 agttgaatgattcaagtggggatccagactatgagaaactatggaagccacctccaaatcatgggtt 93  Q
    ||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  42794375 agttgaatgattcaaatggggatccagactatgagaaactgtagaagccacctccaaatcatgggtt 42794309  T

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Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 27 - 93
Target Start/End: Complemental strand, 19398172 - 19398106
Alignment:
Q  27 agttgaatgattcaagtggggatccagactatgagaaactatggaagccacctccaaatcatgggtt 93  Q
    ||||||||||||||| |||||||||||||||||| ||||| | ||||||||||||||||||||||||    
T  19398172 agttgaatgattcaaatggggatccagactatgataaactgtagaagccacctccaaatcatgggtt 19398106  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 139
Target Start/End: Complemental strand, 27152983 - 27152865
Alignment:
Q  21 tttgacagttgaatgattcaagtggggatccagactatgagaaactatggaagccacctccaaatcatgggtttcaaccctgtacaaagcctactcctaa 120  Q
    ||||||||||||||  || ||| |||||| | || || | ||| || |||||||| ||  |||||| ||||||||  || ||||||||||||||||||||    
T  27152983 tttgacagttgaatcgtttaagaggggattctgattacgtgaagctgtggaagcctccatcaaatcgtgggtttcttccttgtacaaagcctactcctaa 27152884  T
Q  121 ctacactagtaagaaactt 139  Q
     |||||  |||||||||||    
T  27152883 ttacaccggtaagaaactt 27152865  T

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