View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21087_high_65 (Length: 227)
Name: NF21087_high_65
Description: NF21087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21087_high_65 |
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Alignment Details
Target: chr6 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 6 - 181
Target Start/End: Original strand, 31174500 - 31174667
Alignment:
| Q |
6 |
attcccaccatcttggtttgtcacctgcaattaggagtgacaaaatcaataaaatctatcgattttggtttgaattgaaccaccggagattcaacattca |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
31174500 |
attcccaccatcttggtttgtcacctgcaattaggagtggcaaaatcaataaaatct-------ttggtttgaattgaaccaccggag-ttcaacattca |
31174591 |
T |
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| Q |
106 |
ctcgggtcgaagtcgatcaatactaagtgaatgactaattcaaccatcaaaattatagtcaattatgtactttcta |
181 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31174592 |
ctcgggacgaagtcgatcaatactaagtgaatgactaattcaaccatcaaaattatagtcaattatgtactttcta |
31174667 |
T |
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