View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21087_high_9 (Length: 571)
Name: NF21087_high_9
Description: NF21087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21087_high_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 179; Significance: 2e-96; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 197 - 383
Target Start/End: Complemental strand, 29257791 - 29257605
Alignment:
| Q |
197 |
tttcaagttagctgcctcatttaaaactgtgagagaccttaaacctagacctccctcatcagttggtttgttaaaatacttcaaacattggatatgaaca |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29257791 |
tttcaagttagctgcctcatttaaaactgtgagagaccttaaacctaaacctccctcatcagttggtttgttaaaatacttcaaacattggatatgaaca |
29257692 |
T |
|
| Q |
297 |
aacagaaattggtattgagataaatcatttgaactgctaaaaatgggattttattacttagcacagtggtttaatgtaatcatacat |
383 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29257691 |
aacagaaattggtattgagataaatcctttgaactgctaaaaatgggattttattacttagcacagtggtttaatgtaatcatacat |
29257605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 7 - 148
Target Start/End: Complemental strand, 29257950 - 29257814
Alignment:
| Q |
7 |
ctgacaaccccaatcatcattccaaaagttaaccttatgaccatccccaatgcaccatcttgagttctccaaaattcagattttatactgctccatattg |
106 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29257950 |
ctgacaaccccaatcatcattccaaaacttaaccttatgaccatccccaatgcaccatcttgagttctccaaaattcagattttatactgctccatattg |
29257851 |
T |
|
| Q |
107 |
aagaaaaaatgtggcatggcatttaactggagttctctttgg |
148 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
29257850 |
aagaaaaaatgtg-----gcatttaactggagttctctttgg |
29257814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 488 - 570
Target Start/End: Complemental strand, 29257506 - 29257424
Alignment:
| Q |
488 |
tcagaagtattgaaattacagaaagtaaagtaaagtggtttaccagattgcttgctagcttttacagatctcctctcctcctc |
570 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
29257506 |
tcagaagcattgaaattacagaaagtaaagtaaagtggtttaccagattgcttgctagcttttacagatctcctttcctcctc |
29257424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 77 - 119
Target Start/End: Original strand, 19281996 - 19282038
Alignment:
| Q |
77 |
aaaattcagattttatactgctccatattgaagaaaaaatgtg |
119 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||| |||||||| |
|
|
| T |
19281996 |
aaaattcagactttatactgctccatatggaagagaaaatgtg |
19282038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 120
Target Start/End: Original strand, 34690561 - 34690594
Alignment:
| Q |
87 |
ttttatactgctccatattgaagaaaaaatgtgg |
120 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |
|
|
| T |
34690561 |
ttttatactactccatattgaagaaaaaatgtgg |
34690594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University