View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21087_low_10 (Length: 564)

Name: NF21087_low_10
Description: NF21087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21087_low_10
NF21087_low_10
[»] chr2 (37 HSPs)
chr2 (76-548)||(4707367-4707835)
chr2 (1-83)||(4707888-4707972)
chr2 (376-488)||(26998323-26998435)
chr2 (395-495)||(41528255-41528355)
chr2 (376-495)||(3201325-3201444)
chr2 (389-488)||(32273677-32273776)
chr2 (389-488)||(38071002-38071100)
chr2 (376-487)||(40584440-40584551)
chr2 (392-495)||(6110257-6110362)
chr2 (389-488)||(4891694-4891793)
chr2 (376-447)||(19264147-19264218)
chr2 (376-495)||(28599190-28599309)
chr2 (376-495)||(33198673-33198792)
chr2 (376-495)||(35517122-35517241)
chr2 (392-481)||(9709526-9709615)
chr2 (377-487)||(6765976-6766087)
chr2 (392-447)||(11617071-11617126)
chr2 (389-488)||(32010108-32010207)
chr2 (376-427)||(43415468-43415519)
chr2 (392-495)||(45085256-45085359)
chr2 (391-488)||(8032725-8032823)
chr2 (377-447)||(8701649-8701719)
chr2 (389-427)||(16494981-16495019)
chr2 (376-434)||(24204571-24204629)
chr2 (376-434)||(25572105-25572163)
chr2 (392-434)||(45660425-45660467)
chr2 (376-433)||(7645269-7645326)
chr2 (389-434)||(35115859-35115904)
chr2 (376-428)||(29524083-29524135)
chr2 (391-427)||(33677550-33677586)
chr2 (329-428)||(9864711-9864813)
chr2 (389-436)||(12938300-12938347)
chr2 (376-431)||(43451564-43451619)
chr2 (389-435)||(11030985-11031031)
chr2 (392-434)||(14874023-14874065)
chr2 (389-435)||(16179642-16179688)
chr2 (388-461)||(28678702-28678774)
[»] chr8 (31 HSPs)
chr8 (392-495)||(26483529-26483632)
chr8 (376-488)||(17713227-17713339)
chr8 (376-495)||(34890218-34890337)
chr8 (389-447)||(8745628-8745686)
chr8 (376-434)||(2628208-2628266)
chr8 (329-495)||(7022398-7022566)
chr8 (389-488)||(4038938-4039037)
chr8 (389-488)||(17336746-17336845)
chr8 (392-495)||(36190769-36190872)
chr8 (389-488)||(41362364-41362463)
chr8 (395-488)||(25195109-25195202)
chr8 (389-430)||(26954449-26954490)
chr8 (392-495)||(7858525-7858628)
chr8 (389-488)||(8673385-8673484)
chr8 (384-439)||(34899978-34900033)
chr8 (392-495)||(35456084-35456187)
chr8 (392-434)||(13144006-13144048)
chr8 (388-433)||(8712583-8712628)
chr8 (392-488)||(8711881-8711977)
chr8 (388-436)||(29920324-29920372)
chr8 (376-447)||(28497182-28497253)
chr8 (392-487)||(31734120-31734215)
chr8 (392-427)||(34158351-34158386)
chr8 (392-434)||(2052892-2052934)
chr8 (393-435)||(14576213-14576255)
chr8 (389-427)||(33563568-33563606)
chr8 (392-426)||(43216407-43216441)
chr8 (376-433)||(5217451-5217508)
chr8 (392-495)||(15957971-15958076)
chr8 (392-428)||(13143828-13143864)
chr8 (376-488)||(29147281-29147393)
[»] chr3 (44 HSPs)
chr3 (376-495)||(37042419-37042538)
chr3 (392-495)||(30189573-30189677)
chr3 (392-495)||(23311611-23311714)
chr3 (376-488)||(8097020-8097132)
chr3 (389-488)||(34194892-34194991)
chr3 (376-434)||(46918215-46918273)
chr3 (376-433)||(16032989-16033046)
chr3 (376-495)||(20847270-20847389)
chr3 (391-435)||(54725627-54725671)
chr3 (389-488)||(10114915-10115014)
chr3 (389-488)||(10252015-10252114)
chr3 (389-488)||(22479069-22479168)
chr3 (376-447)||(37075011-37075082)
chr3 (392-494)||(579156-579258)
chr3 (389-447)||(10014314-10014372)
chr3 (391-489)||(34722622-34722720)
chr3 (376-436)||(26724993-26725053)
chr3 (376-488)||(30454727-30454838)
chr3 (396-495)||(14752230-14752329)
chr3 (389-488)||(22456023-22456122)
chr3 (376-495)||(28875409-28875528)
chr3 (392-495)||(35963155-35963258)
chr3 (392-495)||(47864194-47864297)
chr3 (389-488)||(48291826-48291925)
chr3 (392-495)||(11054330-11054429)
chr3 (389-433)||(7886632-7886676)
chr3 (389-429)||(21214304-21214344)
chr3 (377-433)||(31292670-31292726)
chr3 (379-447)||(36546593-36546661)
chr3 (379-447)||(36561654-36561722)
chr3 (379-434)||(2927353-2927408)
chr3 (382-433)||(3084188-3084239)
chr3 (392-427)||(50651055-50651090)
chr3 (388-426)||(3972347-3972385)
chr3 (388-426)||(3997493-3997531)
chr3 (396-434)||(6438147-6438185)
chr3 (392-434)||(23910531-23910573)
chr3 (376-434)||(32619832-32619890)
chr3 (379-436)||(36150980-36151038)
chr3 (392-434)||(46711676-46711718)
chr3 (392-433)||(9264616-9264657)
chr3 (379-447)||(29235238-29235306)
chr3 (389-429)||(38401443-38401483)
chr3 (376-432)||(41936200-41936256)
[»] chr6 (15 HSPs)
chr6 (376-495)||(35129097-35129217)
chr6 (392-495)||(3095778-3095881)
chr6 (376-495)||(11082288-11082407)
chr6 (389-488)||(16524384-16524482)
chr6 (391-435)||(5300658-5300702)
chr6 (389-488)||(4031991-4032090)
chr6 (389-488)||(4987947-4988046)
chr6 (389-484)||(16013488-16013583)
chr6 (376-495)||(21542417-21542536)
chr6 (376-439)||(21964008-21964071)
chr6 (396-495)||(34177704-34177803)
chr6 (388-434)||(30794247-30794293)
chr6 (379-447)||(7274921-7274989)
chr6 (389-488)||(3888431-3888530)
chr6 (391-447)||(5881810-5881866)
[»] chr7 (29 HSPs)
chr7 (376-495)||(25737669-25737788)
chr7 (392-495)||(14805869-14805972)
chr7 (392-495)||(15252863-15252966)
chr7 (376-495)||(35923251-35923370)
chr7 (376-495)||(45485954-45486073)
chr7 (392-495)||(46760315-46760418)
chr7 (376-489)||(4910675-4910788)
chr7 (329-487)||(19912762-19912922)
chr7 (385-447)||(8015723-8015786)
chr7 (376-495)||(25944575-25944694)
chr7 (376-488)||(39170540-39170652)
chr7 (376-428)||(47779670-47779722)
chr7 (376-431)||(10248591-10248646)
chr7 (392-495)||(18102529-18102632)
chr7 (392-495)||(20123738-20123841)
chr7 (389-488)||(31769017-31769116)
chr7 (392-434)||(6191105-6191147)
chr7 (378-427)||(31549947-31549996)
chr7 (390-434)||(24151638-24151682)
chr7 (376-447)||(22632136-22632207)
chr7 (389-488)||(38260322-38260421)
chr7 (396-447)||(47557663-47557714)
chr7 (392-434)||(4069063-4069105)
chr7 (392-434)||(12632402-12632444)
chr7 (389-447)||(35888024-35888082)
chr7 (457-490)||(18800856-18800889)
chr7 (382-431)||(36576476-36576525)
chr7 (382-431)||(48879446-48879495)
chr7 (392-428)||(9158155-9158191)
[»] chr4 (46 HSPs)
chr4 (376-495)||(47867876-47867995)
chr4 (329-495)||(4058712-4058880)
chr4 (376-495)||(20281588-20281707)
chr4 (389-495)||(17794590-17794696)
chr4 (376-489)||(56318106-56318219)
chr4 (376-476)||(7654633-7654733)
chr4 (395-495)||(29203503-29203603)
chr4 (376-495)||(2229244-2229363)
chr4 (376-495)||(14332757-14332876)
chr4 (392-495)||(20716177-20716280)
chr4 (394-488)||(23978169-23978263)
chr4 (392-433)||(16604898-16604939)
chr4 (376-433)||(28669037-28669094)
chr4 (376-433)||(40553828-40553885)
chr4 (389-430)||(46070571-46070612)
chr4 (376-428)||(5483314-5483366)
chr4 (376-488)||(5841815-5841927)
chr4 (389-429)||(49080320-49080360)
chr4 (389-488)||(8178288-8178387)
chr4 (388-483)||(17799182-17799277)
chr4 (392-495)||(26916322-26916425)
chr4 (376-447)||(28142658-28142729)
chr4 (376-427)||(29511490-29511541)
chr4 (376-447)||(35310778-35310849)
chr4 (392-489)||(41414663-41414759)
chr4 (389-430)||(47516240-47516281)
chr4 (376-495)||(1585383-1585502)
chr4 (376-488)||(8013125-8013237)
chr4 (396-488)||(28318473-28318565)
chr4 (376-428)||(48793664-48793716)
chr4 (388-436)||(50145792-50145840)
chr4 (377-433)||(55580729-55580785)
chr4 (389-488)||(5064704-5064803)
chr4 (389-436)||(21722731-21722778)
chr4 (379-434)||(24940423-24940478)
chr4 (389-432)||(32203273-32203316)
chr4 (376-427)||(32323298-32323349)
chr4 (376-447)||(37911929-37912000)
chr4 (376-431)||(50768501-50768556)
chr4 (376-435)||(53848517-53848576)
chr4 (392-434)||(10069755-10069797)
chr4 (389-427)||(32410393-32410431)
chr4 (376-433)||(39078216-39078272)
chr4 (382-434)||(8018438-8018490)
chr4 (376-420)||(28681726-28681770)
chr4 (376-428)||(42915594-42915646)
[»] chr1 (48 HSPs)
chr1 (376-488)||(5950445-5950557)
chr1 (376-487)||(2126045-2126156)
chr1 (376-433)||(43765355-43765412)
chr1 (389-488)||(7397712-7397811)
chr1 (376-435)||(8889740-8889799)
chr1 (389-488)||(15912204-15912303)
chr1 (392-495)||(39555645-39555748)
chr1 (382-487)||(52841494-52841599)
chr1 (376-488)||(37538815-37538927)
chr1 (377-436)||(3861739-3861798)
chr1 (376-495)||(6785455-6785574)
chr1 (392-495)||(15959699-15959802)
chr1 (392-495)||(32624064-32624167)
chr1 (392-495)||(40718677-40718780)
chr1 (389-488)||(44510275-44510374)
chr1 (395-489)||(28120817-28120911)
chr1 (389-430)||(16688200-16688241)
chr1 (389-434)||(32318616-32318661)
chr1 (376-488)||(5858414-5858526)
chr1 (376-436)||(10558799-10558859)
chr1 (392-488)||(13351686-13351782)
chr1 (392-495)||(43667362-43667463)
chr1 (376-447)||(11241074-11241145)
chr1 (392-495)||(12449026-12449129)
chr1 (376-495)||(24190469-24190587)
chr1 (376-447)||(24728670-24728741)
chr1 (389-488)||(25185360-25185459)
chr1 (389-488)||(45840122-45840220)
chr1 (392-495)||(47600098-47600201)
chr1 (389-447)||(30701441-30701499)
chr1 (329-447)||(6786885-6787005)
chr1 (394-447)||(28016807-28016860)
chr1 (376-436)||(7468006-7468066)
chr1 (392-495)||(35691391-35691495)
chr1 (376-428)||(44148879-44148931)
chr1 (376-436)||(52984991-52985051)
chr1 (395-434)||(42965877-42965916)
chr1 (392-495)||(47014550-47014652)
chr1 (376-434)||(30221785-30221843)
chr1 (389-447)||(50176569-50176627)
chr1 (376-433)||(2246057-2246114)
chr1 (389-434)||(35366259-35366304)
chr1 (388-428)||(3076361-3076401)
chr1 (376-428)||(25391748-25391799)
chr1 (392-428)||(32983230-32983266)
chr1 (392-428)||(46818561-46818597)
chr1 (388-436)||(47302961-47303008)
chr1 (389-433)||(51338953-51338997)
[»] chr5 (29 HSPs)
chr5 (392-495)||(6686383-6686486)
chr5 (392-495)||(11261943-11262046)
chr5 (376-495)||(43590005-43590124)
chr5 (390-488)||(10153985-10154083)
chr5 (389-488)||(12912350-12912449)
chr5 (376-495)||(38130159-38130278)
chr5 (392-495)||(38280846-38280949)
chr5 (389-488)||(8959646-8959745)
chr5 (376-487)||(20644021-20644132)
chr5 (392-488)||(37522648-37522744)
chr5 (376-495)||(42273648-42273765)
chr5 (392-495)||(37562821-37562924)
chr5 (389-430)||(5369087-5369128)
chr5 (397-488)||(5659584-5659676)
chr5 (389-488)||(3463871-3463970)
chr5 (392-446)||(34425378-34425432)
chr5 (376-428)||(19413207-19413259)
chr5 (389-429)||(29307243-29307283)
chr5 (376-428)||(39505276-39505328)
chr5 (376-447)||(1144534-1144605)
chr5 (389-488)||(5736296-5736395)
chr5 (376-427)||(5984151-5984202)
chr5 (389-428)||(8506497-8506536)
chr5 (376-427)||(25840931-25840982)
chr5 (376-489)||(2002176-2002289)
chr5 (389-442)||(16153402-16153454)
chr5 (379-436)||(17351446-17351503)
chr5 (394-427)||(32017770-32017803)
chr5 (390-426)||(43454380-43454416)
[»] scaffold0442 (1 HSPs)
scaffold0442 (376-495)||(10044-10163)
[»] scaffold0774 (1 HSPs)
scaffold0774 (376-495)||(3471-3590)
[»] scaffold0300 (1 HSPs)
scaffold0300 (392-495)||(632-735)
[»] scaffold0045 (1 HSPs)
scaffold0045 (392-495)||(77956-78059)
[»] scaffold0565 (1 HSPs)
scaffold0565 (389-488)||(5931-6030)
[»] scaffold0111 (1 HSPs)
scaffold0111 (376-447)||(40226-40297)
[»] scaffold1157 (1 HSPs)
scaffold1157 (376-433)||(1710-1767)
[»] scaffold0018 (1 HSPs)
scaffold0018 (392-495)||(154860-154963)
[»] scaffold0330 (1 HSPs)
scaffold0330 (389-447)||(3215-3273)
[»] scaffold0010 (1 HSPs)
scaffold0010 (376-433)||(160962-161019)
[»] scaffold0009 (1 HSPs)
scaffold0009 (376-428)||(157860-157912)


Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 76 - 548
Target Start/End: Complemental strand, 4707835 - 4707367
Alignment:
Q  76 tttttcaccttctactgttatatcatgaactctactaaaaaagtattccctataaagtatttgttccaactccaagaatctctctactttatccctgtct 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  4707835 tttttcaccttctactgttatatcatgaactctactaaaaaagtattccctgtaaagtatttgttccaactccaagaatctctctactttatccttgtct 4707736  T
Q  176 caaagaaattcaccattggaaaatggtttcccaagtcccaactgatgcttaacccaaaaggctaacccaattttgaacatacaaacattagttgtacgaa 275  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||    
T  4707735 caaagaaattcaccattgaaaaatggtttcccaagtcccaactgatgcttaacccaaaaggttaccccaattttgaacatacaaacattagttgttcgaa 4707636  T
Q  276 cgctaatactccctccgtttcaaattataggaagnnnnnnnnnnnnntcaatccacatttattaagaacactaaaacatgatttggagtatagnnnnnnn 375  Q
     |||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||           
T  4707635 tgctaatactccctccgtttcaaattataggaag---aaaaaaaaaatcaatccacatttattaagaacactaaaacatgatttggagtatag-tttttt 4707540  T
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 475  Q
    |||||||||||||||||||||| |  |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  4707539 gtgttttccttagaataagtttaacgggaagatgttaaaacaattttcattggttattcatcatagaaaaaaggagaggaggagcacattgaatgcaatt 4707440  T
Q  476 tacatttaattttacgagaagtcataacagcnnnnnnnaagcatgtgttttgtttaactttttgtcacaattg 548  Q
    |||||||||||||||||||| ||||||||||       |||||||||||||||||||||||||||||||||||    
T  4707439 tacatttaattttacgagaattcataacagctttttttaagcatgtgttttgtttaactttttgtcacaattg 4707367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 4707888 - 4707972
Alignment:
Q  1 aaaatgagtaaataaagattattttattattatacttgcaacaacatttt--aatgtgtttatcgtcaactggaatatttttcac 83  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |   ||||||||||||||||||||||||||||||||    
T  4707888 aaaatgagtaaatatagattattttattattatacttgcaacaacattctgacatgtgtttatcgtcaactggaatatttttcac 4707972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 376 - 488
Target Start/End: Complemental strand, 26998435 - 26998323
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 475  Q
    ||||| || ||| |||||||||||||||||||||| ||||||||||||||||||  ||||| ||||| |||| || |    ||||| |||||||||| ||    
T  26998435 gtgttatctttaaaataagttttataggaagatgtaaaaacaattttcattggtagttgattatagagaaaatgaaaaagagagcaaattgaatgcactt 26998336  T
Q  476 tacatttaatttt 488  Q
    | |||||||||||    
T  26998335 tgcatttaatttt 26998323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 395 - 495
Target Start/End: Complemental strand, 41528355 - 41528255
Alignment:
Q  395 ttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacgaga 494  Q
    |||||||||||||||| ||||||||||||||||| ||||| | || ||||||| || || | ||| | |||||||| ||||| |||||||||||| ||||    
T  41528355 ttttataggaagatgtaaaaacaattttcattggctattggttatggaaaaaatgaaagaaagagaaaattgaatgtaatttgcatttaattttatgaga 41528256  T
Q  495 a 495  Q
    |    
T  41528255 a 41528255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 376 - 495
Target Start/End: Complemental strand, 3201444 - 3201325
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 475  Q
    |||||||| || ||| ||||||||||| ||||||| ||||||||||||||||| ||||| | || ||||||| || || | ||  | |||||||| ||||    
T  3201444 gtgttttctttggaaaaagttttatagaaagatgtaaaaacaattttcattggctattggttatggaaaaaatgaaagaaagataaaattgaatgtaatt 3201345  T
Q  476 tacatttaattttacgagaa 495  Q
    | |||||||||||| |||||    
T  3201344 tgcatttaattttatgagaa 3201325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 389 - 488
Target Start/End: Complemental strand, 32273776 - 32273677
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 488  Q
    |||||||||||||||||||| | ||||||||||||||||||  ||||| ||||| |||| || |    ||||| |||||||||| |||||||||||||||    
T  32273776 aataagttttataggaagatataaaaacaattttcattggtagttgattatagagaaaatgaaaaagagagcaaattgaatgcactttacatttaatttt 32273677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 389 - 488
Target Start/End: Complemental strand, 38071100 - 38071002
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 488  Q
    ||||||||||| |||||||||| ||||||||||||||||||  ||||| ||||| |||| || |  | ||||| |||||||||| |||||||||||||||    
T  38071100 aataagttttacaggaagatgtaaaaacaattttcattggtagttgattatagagaaaatgaaaata-gagcaaattgaatgcactttacatttaatttt 38071002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 376 - 487
Target Start/End: Original strand, 40584440 - 40584551
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 475  Q
    |||||||| |||||||||||||||| ||||||||| ||||||||||||||||||| ||| | || | ||||| || ||   ||| | |||||||| ||||    
T  40584440 gtgttttctttagaataagttttatgggaagatgtaaaaacaattttcattggttgttggttatgggaaaaatgaaagagagagaaaattgaatgtaatt 40584539  T
Q  476 tacatttaattt 487  Q
    | ||||||||||    
T  40584540 tgcatttaattt 40584551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 392 - 495
Target Start/End: Original strand, 6110257 - 6110362
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagag-gag-gagcacattgaatgcaatttacatttaatttta 489  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| | || ||||||| || || ||| ||| | |||||||| ||||| ||||||||||||    
T  6110257 aagttttataggaagatgtaaaaacaattttcattggctattggttatggaaaaaatgaaagagagagagaaaattgaatgtaatttgcatttaatttta 6110356  T
Q  490 cgagaa 495  Q
     |||||    
T  6110357 tgagaa 6110362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 389 - 488
Target Start/End: Original strand, 4891694 - 4891793
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 488  Q
    |||||||||||||||||||||| ||||||||||| ||||||  ||||| ||| | |||| || |    ||||| |||||||||| |||||||||||||||    
T  4891694 aataagttttataggaagatgtaaaaacaatttttattggtagttgattataaagaaaatgaaaaagagagcagattgaatgcactttacatttaatttt 4891793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 447
Target Start/End: Complemental strand, 19264218 - 19264147
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaa 447  Q
    |||||||| || ||| ||||||||||||||||||| ||||||||||||||||| ||||| | || |||||||    
T  19264218 gtgttttctttggaaaaagttttataggaagatgtaaaaacaattttcattggctattggttatggaaaaaa 19264147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 495
Target Start/End: Original strand, 28599190 - 28599309
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 475  Q
    |||||||| || ||| ||| ||||||||||||||| |||| |||||||||||| ||||| | || ||||||| || || | ||| | |||||||| |||     
T  28599190 gtgttttctttggaaaaagatttataggaagatgtaaaaataattttcattggctattggttatggaaaaaatgaaagaaagagaaaattgaatgtaata 28599289  T
Q  476 tacatttaattttacgagaa 495  Q
    | |||||||||||| |||||    
T  28599290 tgcatttaattttatgagaa 28599309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 495
Target Start/End: Original strand, 33198673 - 33198792
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 475  Q
    |||||||| ||| || ||||||||||||||||||| ||||||||||| ||||||||||| | || || |||| || ||   ||| | |||||||| ||||    
T  33198673 gtgttttctttaaaagaagttttataggaagatgtaaaaacaattttgattggttattggttatggagaaaatgaaagagagagaaaattgaatgtaatt 33198772  T
Q  476 tacatttaattttacgagaa 495  Q
    | ||||||||| || |||||    
T  33198773 tgcatttaattctatgagaa 33198792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 495
Target Start/End: Complemental strand, 35517241 - 35517122
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 475  Q
    |||||||| || ||| |||||||||||  |||||| |||| |||||||||||| ||||| | || ||||||| || || | ||| | |||||||| ||||    
T  35517241 gtgttttctttggaaaaagttttatagtgagatgtaaaaataattttcattggctattggttatggaaaaaatgaaagaaagagaaaattgaatgtaatt 35517142  T
Q  476 tacatttaattttacgagaa 495  Q
    | |||||||||||| |||||    
T  35517141 tgcatttaattttatgagaa 35517122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 392 - 481
Target Start/End: Complemental strand, 9709615 - 9709526
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatt 481  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||| || || |||| || ||   || || |||||||||||||| ||||    
T  9709615 aagttttataggaagatgtgaaaacaattttcatttgttattgattattgagaaaatgaaagagagaacaaattgaatgcaatttgcatt 9709526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 377 - 487
Target Start/End: Original strand, 6765976 - 6766087
Alignment:
Q  377 tgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggag-gagcacattgaatgcaatt 475  Q
    ||||||| || |||||| |||||||||||||||| ||||||||||| ||||  ||||| | || |||||||   || ||| ||| | |||||||| ||||    
T  6765976 tgttttcattggaataaattttataggaagatgtaaaaacaatttttattgactattggttatggaaaaaaatggaagagagagaaaattgaatgtaatt 6766075  T
Q  476 tacatttaattt 487  Q
    ||||||||||||    
T  6766076 tacatttaattt 6766087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 392 - 447
Target Start/End: Complemental strand, 11617126 - 11617071
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaa 447  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| | |||| |||||    
T  11617126 aagttttataggaagatgtaaaaacaattttcattggctattggttatagtaaaaa 11617071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 488
Target Start/End: Complemental strand, 32010207 - 32010108
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 488  Q
    |||||||||||||||||||||| |||| |||||||||||||  ||||| ||||| |||| || |    ||||| ||| |||||| ||| |||||||||||    
T  32010207 aataagttttataggaagatgtaaaaataattttcattggtagttgattatagagaaaatgaaaaagagagcaaattaaatgcactttgcatttaatttt 32010108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 376 - 427
Target Start/End: Complemental strand, 43415519 - 43415468
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattg 427  Q
    |||||||| ||| || ||||||||||||||||||| ||||||||||||||||    
T  43415519 gtgttttctttaaaaaaagttttataggaagatgtaaaaacaattttcattg 43415468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 392 - 495
Target Start/End: Complemental strand, 45085359 - 45085256
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 491  Q
    ||||||||||||||||||| ||||||||||||||| |  |||| | || ||||||| || ||   ||| | |||||||| ||||| |||||||||||| |    
T  45085359 aagttttataggaagatgtaaaaacaattttcattagccattggttatggaaaaaatgaaagagagagaaaattgaatgtaatttgcatttaattttatg 45085260  T
Q  492 agaa 495  Q
    ||||    
T  45085259 agaa 45085256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 488
Target Start/End: Original strand, 8032725 - 8032823
Alignment:
Q  391 taagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggag-gagcacattgaatgcaatttacatttaatttt 488  Q
    |||||||||||||||||||| ||||||||||| |||||||  |  | || || |||| || ||||| ||||| |||||||||| ||| |||||||||||    
T  8032725 taagttttataggaagatgtaaaaacaatttttattggttgctagttattgagaaaatgaaaggagagagcaaattgaatgcattttgcatttaatttt 8032823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 447
Target Start/End: Complemental strand, 8701719 - 8701649
Alignment:
Q  377 tgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaa 447  Q
    ||||||| || |||||||||| || ||||||||| ||||||||||||||||| ||||| | || |||||||    
T  8701719 tgttttctttggaataagtttcatgggaagatgtaaaaacaattttcattggctattggttatggaaaaaa 8701649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 389 - 427
Target Start/End: Original strand, 16494981 - 16495019
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattg 427  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  16494981 aataagttttataggaagatgtaaaaacaattttcattg 16495019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 376 - 434
Target Start/End: Original strand, 24204571 - 24204629
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattg 434  Q
    |||||||| || |||||||||||||||||| |||| ||| ||||||||||||| |||||    
T  24204571 gtgttttctttggaataagttttataggaatatgtaaaatcaattttcattggctattg 24204629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 376 - 434
Target Start/End: Complemental strand, 25572163 - 25572105
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattg 434  Q
    |||||||| || |||||||||| || ||||||||| ||||||||||||||||| |||||    
T  25572163 gtgttttctttggaataagtttcatgggaagatgtaaaaacaattttcattggatattg 25572105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 434
Target Start/End: Complemental strand, 45660467 - 45660425
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattg 434  Q
    ||||||||||||||||||| ||||||||||||||||| |||||    
T  45660467 aagttttataggaagatgtaaaaacaattttcattggctattg 45660425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 376 - 433
Target Start/End: Original strand, 7645269 - 7645326
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttatt 433  Q
    |||||||||||||||||| ||| || |||| |||| ||||||||||||||||| ||||    
T  7645269 gtgttttccttagaataaatttcatgggaacatgtaaaaacaattttcattggctatt 7645326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 389 - 434
Target Start/End: Original strand, 35115859 - 35115904
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggttattg 434  Q
    |||||||||||||| ||||||| ||||||||||||||| |||||||    
T  35115859 aataagttttatagaaagatgtaaaaacaattttcatttgttattg 35115904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 428
Target Start/End: Original strand, 29524083 - 29524135
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattgg 428  Q
    |||||||| || |||||||||| || ||||||||| |||||||||||||||||    
T  29524083 gtgttttctttggaataagtttcatgggaagatgtaaaaacaattttcattgg 29524135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 427
Target Start/End: Complemental strand, 33677586 - 33677550
Alignment:
Q  391 taagttttataggaagatgttaaaacaattttcattg 427  Q
    |||||||||||||||||||| ||||||||||||||||    
T  33677586 taagttttataggaagatgtaaaaacaattttcattg 33677550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 428
Target Start/End: Original strand, 9864711 - 9864813
Alignment:
Q  329 cacatttattaagaacactaaaacatga---tttggagtatagnnnnnnngtgttttccttagaataagttttataggaagatgttaaaacaattttcat 425  Q
    |||| |||||||||| |||||||||| |   ||||||||||||       |||||||| || |||||||||| || |||||| || ||||||||||||||    
T  9864711 cacacttattaagaaaactaaaacataagaatttggagtatagtttttttgtgttttctttggaataagtttcatgggaagaggtaaaaacaattttcat 9864810  T
Q  426 tgg 428  Q
    |||    
T  9864811 tgg 9864813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 436
Target Start/End: Complemental strand, 12938347 - 12938300
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggttattgat 436  Q
    |||||||||||||||||  ||| ||||||||||||||||| |||||||    
T  12938347 aataagttttataggaaagtgtaaaaacaattttcattggctattgat 12938300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 431
Target Start/End: Complemental strand, 43451619 - 43451564
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggtta 431  Q
    ||||| |||||||||||||||| || | ||||||| |||| |||||||||||||||    
T  43451619 gtgttctccttagaataagtttcatggaaagatgtaaaaataattttcattggtta 43451564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 435
Target Start/End: Original strand, 11030985 - 11031031
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggttattga 435  Q
    |||||||||||||| ||||| | ||||||||||| ||||||||||||    
T  11030985 aataagttttatagaaagatataaaaacaatttttattggttattga 11031031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 392 - 434
Target Start/End: Complemental strand, 14874065 - 14874023
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattg 434  Q
    ||||||||||||||||||| |||| |||||||||||| |||||    
T  14874065 aagttttataggaagatgtaaaaataattttcattggctattg 14874023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 435
Target Start/End: Original strand, 16179642 - 16179688
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggttattga 435  Q
    |||||||||||||| ||||||| ||||||| ||| ||||||||||||    
T  16179642 aataagttttatagaaagatgtaaaaacaaattttattggttattga 16179688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 461
Target Start/End: Original strand, 28678702 - 28678774
Alignment:
Q  388 gaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagca 461  Q
    |||||||| |||||| || |||| |||||| |||| ||||||||||||| ||||| |||| || ||||||||||    
T  28678702 gaataagtgttatagaaaaatgtaaaaacattttt-attggttattgattatagagaaaatgaaaggaggagca 28678774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 6e-23; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 392 - 495
Target Start/End: Complemental strand, 26483632 - 26483529
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 491  Q
    |||||||||||| |||||| ||||||||||||||||| ||||||| || ||||||| || || | ||| | |||||||| ||||||||||||||||||||    
T  26483632 aagttttatagggagatgtaaaaacaattttcattggctattgattatggaaaaaatgaaagaaagagaaaattgaatgtaatttacatttaattttacg 26483533  T
Q  492 agaa 495  Q
    ||||    
T  26483532 agaa 26483529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 376 - 488
Target Start/End: Complemental strand, 17713339 - 17713227
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggag-gagcacattgaatgcaat 474  Q
    ||||| |||||  |||||||||||||||||||| | ||||||||||||||||||||||| | || ||||||| | || ||| |||||||||||||||| |    
T  17713339 gtgttatccttgaaataagttttataggaagatttaaaaacaattttcattggttattggttattgaaaaaatg-gaagagagagcacattgaatgcact 17713241  T
Q  475 ttacatttaatttt 488  Q
    || |||||||||||    
T  17713240 ttgcatttaatttt 17713227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 376 - 495
Target Start/End: Original strand, 34890218 - 34890337
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 475  Q
    |||||||| || ||| ||||||||||||||||||| ||||||||||||||||| ||||| | || ||||||| || ||   ||| | |||||||| ||||    
T  34890218 gtgttttctttggaaaaagttttataggaagatgtaaaaacaattttcattggctattggttatggaaaaaatgaaagagagagaaaattgaatgtaatt 34890317  T
Q  476 tacatttaattttacgagaa 495  Q
    | |||||||||||| |||||    
T  34890318 tgcatttaattttatgagaa 34890337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 389 - 447
Target Start/End: Complemental strand, 8745686 - 8745628
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaa 447  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||    
T  8745686 aataagttttataggaagatgtaaaaacaattttcattggttgttgattatagaaaaaa 8745628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 376 - 434
Target Start/End: Original strand, 2628208 - 2628266
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattg 434  Q
    ||||| |||||| |||||||||||||||||||||| |||| ||||||||||||||||||    
T  2628208 gtgttatccttaaaataagttttataggaagatgtaaaaataattttcattggttattg 2628266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 329 - 495
Target Start/End: Original strand, 7022398 - 7022566
Alignment:
Q  329 cacatttattaagaacactaaaacatga---tttggagtatagnnnnnnngtgttttccttagaataagttttataggaagatgttaaaacaattttcat 425  Q
    ||||||||||||||| |||||||||| |   ||||||||||||       |||||||| ||  || ||||||||||||||||| | |||| |||||||||    
T  7022398 cacatttattaagaaaactaaaacataaaaatttggagtatagtttttt-gtgttttctttgaaaaaagttttataggaagatataaaaataattttcat 7022496  T
Q  426 tggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacgagaa 495  Q
    ||| ||||| | || ||||||| || || | ||| | |||||||| ||||| |||||||||||| |||||    
T  7022497 tggctattggttatggaaaaaatgaaagaaagagaaaattgaatgtaatttgcatttaattttatgagaa 7022566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 389 - 488
Target Start/End: Original strand, 4038938 - 4039037
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 488  Q
    ||||||||||||| |||||||| ||||||||||||||| ||  ||||| ||||| |||| || |    ||||| |||||||||| |||||||||||||||    
T  4038938 aataagttttatatgaagatgtaaaaacaattttcatttgtagttgattatagagaaaatgaaaaagagagcaaattgaatgcactttacatttaatttt 4039037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 389 - 488
Target Start/End: Complemental strand, 17336845 - 17336746
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 488  Q
    ||||| |||||||||||||||| ||||||||||||||||||  ||||| |||||  ||| || | |  ||||| |||||||||| ||| |||||||||||    
T  17336845 aataaattttataggaagatgtaaaaacaattttcattggtagttgattatagagtaaatgaaaaggagagcaaattgaatgcactttgcatttaatttt 17336746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 392 - 495
Target Start/End: Complemental strand, 36190872 - 36190769
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 491  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| | || |||||||  | ||   ||| | |||||||| ||||| |||||||||||| |    
T  36190872 aagttttataggaagatgtaaaaacaattttcattggctattggttatggaaaaaataaaagagagagaaaattgaatgtaatttgcatttaattttatg 36190773  T
Q  492 agaa 495  Q
    ||||    
T  36190772 agaa 36190769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 389 - 488
Target Start/End: Original strand, 41362364 - 41362463
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 488  Q
    |||||||||||||||||||||| ||||||||||||||||||  ||||| ||||| |||| || |    ||||| ||| |||||| ||| |||||||||||    
T  41362364 aataagttttataggaagatgtaaaaacaattttcattggtagttgattatagagaaaatgaaaaagtgagcaaattaaatgcactttgcatttaatttt 41362463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 395 - 488
Target Start/End: Original strand, 25195109 - 25195202
Alignment:
Q  395 ttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 488  Q
    |||||||||||||||| ||||||||||||||||||  ||||| ||||| |||| || |    ||||| |||||||||| ||| |||||||||||    
T  25195109 ttttataggaagatgtaaaaacaattttcattggtggttgattatagagaaaatgaaaaagagagcaaattgaatgcactttgcatttaatttt 25195202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 389 - 430
Target Start/End: Original strand, 26954449 - 26954490
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggtt 430  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  26954449 aataagttttataggaagatgtaaaaacaattttcattggtt 26954490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 392 - 495
Target Start/End: Complemental strand, 7858628 - 7858525
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 491  Q
    ||||||||||||||||||| ||||||||||||||||   |||||| || ||||||| || ||   ||| | |||||| | ||||| |||||||||||| |    
T  7858628 aagttttataggaagatgtaaaaacaattttcattgaccattgattatggaaaaaatgaaagagagagaaaattgaaagtaatttgcatttaattttatg 7858529  T
Q  492 agaa 495  Q
    ||||    
T  7858528 agaa 7858525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 488
Target Start/End: Complemental strand, 8673484 - 8673385
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 488  Q
    ||||||||||||| |||||||| ||||||||||||||||||  ||||| ||||| |||| || |    ||||| |||||||| | ||| |||||||||||    
T  8673484 aataagttttataagaagatgtaaaaacaattttcattggtagttgattatagagaaaatgaaaaagagagcaaattgaatgtactttgcatttaatttt 8673385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 384 - 439
Target Start/End: Complemental strand, 34900033 - 34899978
Alignment:
Q  384 cttagaataagttttataggaagatgttaaaacaattttcattggttattgatcat 439  Q
    ||||||||||||||||||||| ||| | |||| |||||| ||||||||||||||||    
T  34900033 cttagaataagttttataggaggatttaaaaataattttgattggttattgatcat 34899978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 392 - 495
Target Start/End: Original strand, 35456084 - 35456187
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 491  Q
    ||||||||||| ||||||| ||||||||||||||||| |||| || || |||||||  | ||   ||| | | |||||| |||||||||||||||||| |    
T  35456084 aagttttatagaaagatgtaaaaacaattttcattggctattaattatggaaaaaataaaagagagagaaaaatgaatgtaatttacatttaattttatg 35456183  T
Q  492 agaa 495  Q
    ||||    
T  35456184 agaa 35456187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 434
Target Start/End: Original strand, 13144006 - 13144048
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattg 434  Q
    ||||||||||||||||||| ||||||||||||||| |||||||    
T  13144006 aagttttataggaagatgtaaaaacaattttcattagttattg 13144048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 388 - 433
Target Start/End: Complemental strand, 8712628 - 8712583
Alignment:
Q  388 gaataagttttataggaagatgttaaaacaattttcattggttatt 433  Q
    ||||||||||||||| ||||||| ||||||||||| ||||||||||    
T  8712628 gaataagttttatagaaagatgtaaaaacaatttttattggttatt 8712583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 488
Target Start/End: Complemental strand, 8711977 - 8711881
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 488  Q
    ||||||||||||||||||| |||| |||||||||||| ||||| | || |||||||  | ||   ||| | |||||||| ||||| |||||||||||    
T  8711977 aagttttataggaagatgtaaaaataattttcattggctattggttatggaaaaaattaaagagagagaaaattgaatgtaatttgcatttaatttt 8711881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 436
Target Start/End: Original strand, 29920324 - 29920372
Alignment:
Q  388 gaataagttttataggaagatgttaaaacaattttcattggttattgat 436  Q
    |||||||||| || ||||||||| ||||||||||||||||| |||||||    
T  29920324 gaataagtttcatgggaagatgtaaaaacaattttcattggctattgat 29920372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 447
Target Start/End: Original strand, 28497182 - 28497253
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaa 447  Q
    ||||| |||||  |||||||||||| ||||||||| |||||||||||||||  |||||| | || |||||||    
T  28497182 gtgttatccttgaaataagttttatgggaagatgtaaaaacaattttcattacttattggttattgaaaaaa 28497253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 487
Target Start/End: Complemental strand, 31734215 - 31734120
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattt 487  Q
    ||||||||||||||||| | ||||||||||||||||| |||||   || ||||||| || ||   ||| | |||||||| ||||| ||||||||||    
T  31734215 aagttttataggaagatataaaaacaattttcattggctattggatatggaaaaaatgaaagagagagaaaattgaatgtaatttgcatttaattt 31734120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 427
Target Start/End: Original strand, 34158351 - 34158386
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattg 427  Q
    ||||||||||||||||||| ||||||||||||||||    
T  34158351 aagttttataggaagatgtaaaaacaattttcattg 34158386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 392 - 434
Target Start/End: Complemental strand, 2052934 - 2052892
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattg 434  Q
    ||||||||| ||||||||| ||||||||||||||||| |||||    
T  2052934 aagttttatgggaagatgtaaaaacaattttcattggctattg 2052892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 393 - 435
Target Start/End: Original strand, 14576213 - 14576255
Alignment:
Q  393 agttttataggaagatgttaaaacaattttcattggttattga 435  Q
    |||||||||| ||||||| |||| |||||||||||||||||||    
T  14576213 agttttatagaaagatgtaaaaataattttcattggttattga 14576255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 427
Target Start/End: Original strand, 33563568 - 33563606
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattg 427  Q
    |||||||||||| ||||||||| ||||||||||||||||    
T  33563568 aataagttttatgggaagatgtaaaaacaattttcattg 33563606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 392 - 426
Target Start/End: Original strand, 43216407 - 43216441
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcatt 426  Q
    ||||||||||||||||||| |||||||||||||||    
T  43216407 aagttttataggaagatgtaaaaacaattttcatt 43216441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 433
Target Start/End: Complemental strand, 5217508 - 5217451
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttatt 433  Q
    ||||| |||||  ||||||||| |||| ||||||| ||||||||||| ||||||||||    
T  5217508 gtgttatccttgaaataagtttcatagaaagatgtaaaaacaatttttattggttatt 5217451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 495
Target Start/End: Original strand, 15957971 - 15958076
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagag-gag-gagcacattgaatgcaatttacatttaatttta 489  Q
    |||||||||||||| | || ||||||||||||||| | ||||| | || ||||||| || || ||| ||| | |||||||| ||||| ||||||||||||    
T  15957971 aagttttataggaataagtaaaaacaattttcatttgctattggttatggaaaaaatgaaagagagagagaaaattgaatgtaatttgcatttaatttta 15958070  T
Q  490 cgagaa 495  Q
     |||||    
T  15958071 tgagaa 15958076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 392 - 428
Target Start/End: Complemental strand, 13143864 - 13143828
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattgg 428  Q
    |||||| |||||||||||| |||||||||||||||||    
T  13143864 aagtttcataggaagatgtaaaaacaattttcattgg 13143828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 376 - 488
Target Start/End: Original strand, 29147281 - 29147393
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 475  Q
    ||||| ||| || ||||||||| ||| |||||||  ||||||||||||||| ||| ||||| ||||| |||| || | |  || || ||| |||||| ||    
T  29147281 gtgttatccataaaataagtttaataagaagatggaaaaacaattttcattagttgttgattatagagaaaatgaaatggagatcaaattaaatgcagtt 29147380  T
Q  476 tacatttaatttt 488  Q
    | |||||||||||    
T  29147381 tgcatttaatttt 29147393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 6e-23; HSPs: 44)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 376 - 495
Target Start/End: Original strand, 37042419 - 37042538
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 475  Q
    |||||||| || ||| ||||||||||||||||||| ||||||||||||||||| ||||||| || ||||||| || || | ||| | |||||||| ||||    
T  37042419 gtgttttcgttggaaaaagttttataggaagatgtaaaaacaattttcattggctattgattatggaaaaaatgaaagaaagagaaaattgaatgtaatt 37042518  T
Q  476 tacatttaattttacgagaa 495  Q
    | |||||||||||| |||||    
T  37042519 tgcatttaattttatgagaa 37042538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 392 - 495
Target Start/End: Complemental strand, 30189677 - 30189573
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaag-gagaggaggagcacattgaatgcaatttacatttaattttac 490  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| | || |||||||  || || | ||| | |||||||| |||||||||||||||||||    
T  30189677 aagttttataggaagatgtaaaaacaattttcattggctattggttatggaaaaaaatgaaagaaagagaatattgaatgtaatttacatttaattttac 30189578  T
Q  491 gagaa 495  Q
    |||||    
T  30189577 gagaa 30189573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 392 - 495
Target Start/End: Original strand, 23311611 - 23311714
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 491  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| | || ||||||| || || | ||| | |||||||| ||| |||||||||||||| |    
T  23311611 aagttttataggaagatgtaaaaacaattttcattggctattggttatggaaaaaatgaaagaaagagaaaattgaatgtaatatacatttaattttatg 23311710  T
Q  492 agaa 495  Q
    ||||    
T  23311711 agaa 23311714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 376 - 488
Target Start/End: Original strand, 8097020 - 8097132
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 475  Q
    ||||| |||||  |||||||||||||||||||||| |||| |||||||||||||||||| | || || |||| || ||   ||||| |||||||||| ||    
T  8097020 gtgttatccttgaaataagttttataggaagatgtaaaaataattttcattggttattgcttattgagaaaatgaaagagagagcaaattgaatgcactt 8097119  T
Q  476 tacatttaatttt 488  Q
    | |||||||||||    
T  8097120 tgcatttaatttt 8097132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 389 - 488
Target Start/End: Complemental strand, 34194991 - 34194892
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 488  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| | || || |||| || ||   ||||| | |||||||| ||| |||||||||||    
T  34194991 aataagttttataggaagatgtaaaaacaattttcattggttattggttattgagaaaatgaaagagagagcaaactgaatgcactttgcatttaatttt 34194892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 376 - 434
Target Start/End: Original strand, 46918215 - 46918273
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattg 434  Q
    ||||| |||||| |||||||||||||||||||| | |||||||||||||||||||||||    
T  46918215 gtgttatccttaaaataagttttataggaagatctaaaaacaattttcattggttattg 46918273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 376 - 433
Target Start/End: Original strand, 16032989 - 16033046
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttatt 433  Q
    ||||| |||||  |||||||||||||||||||||| ||||||||||||||||||||||    
T  16032989 gtgttatccttgaaataagttttataggaagatgtaaaaacaattttcattggttatt 16033046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 376 - 495
Target Start/End: Original strand, 20847270 - 20847389
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagag-gaggagcacattgaatgcaat 474  Q
    |||||||| || |||||||||| ||||||||||||  ||||||||||||||||| |||||| || || |||| || || |||||  | |||||||| |||    
T  20847270 gtgttttctttggaataagtttcataggaagatgtgcaaacaattttcattggtaattgattatggagaaaatgaaagagagga-aaaattgaatgtaat 20847368  T
Q  475 ttacatttaattttacgagaa 495  Q
    || |||||||||||| |||||    
T  20847369 ttgcatttaattttatgagaa 20847389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 391 - 435
Target Start/End: Original strand, 54725627 - 54725671
Alignment:
Q  391 taagttttataggaagatgttaaaacaattttcattggttattga 435  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  54725627 taagttttataggaagatgtaaaaacaattttcattggttattga 54725671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 389 - 488
Target Start/End: Complemental strand, 10115014 - 10114915
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 488  Q
    |||||||||||||||||||||| ||||||||||||||||||  ||||| ||||| |||| || |    ||||| |||||||||| ||| | |||||||||    
T  10115014 aataagttttataggaagatgtaaaaacaattttcattggtagttgattatagagaaaatgaaaaatagagcaaattgaatgcactttgcttttaatttt 10114915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 389 - 488
Target Start/End: Complemental strand, 10252114 - 10252015
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 488  Q
    |||||||||||||||||||||| ||||||||||||||||||  ||||| ||||| |||| || |    ||||| |||||||||| ||| | |||||||||    
T  10252114 aataagttttataggaagatgtaaaaacaattttcattggtagttgattatagagaaaatgaaaaatagagcaaattgaatgcactttgcttttaatttt 10252015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 389 - 488
Target Start/End: Original strand, 22479069 - 22479168
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 488  Q
    |||||||||||||||||||||| |||||| |||||||||||  ||||| ||||| |||| || |    ||||| |||||||||| ||| |||||||||||    
T  22479069 aataagttttataggaagatgtaaaaacacttttcattggtagttgattatagagaaaatgaaaaagagagcaaattgaatgcactttgcatttaatttt 22479168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 447
Target Start/End: Complemental strand, 37075082 - 37075011
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaa 447  Q
    |||||||| || ||| ||||||||||||||||||| || |||||||||||||| ||||| | ||||||||||    
T  37075082 gtgttttctttggaaaaagttttataggaagatgtaaacacaattttcattggctattggttatagaaaaaa 37075011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 392 - 494
Target Start/End: Original strand, 579156 - 579258
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 491  Q
    ||||||||||||||||| | ||||||||||||||||| ||||| | || ||||||| || ||   ||| | |||||||| ||||| |||||||||||| |    
T  579156 aagttttataggaagatataaaaacaattttcattggctattggttatggaaaaaatgaaagagagagaaaattgaatgtaatttgcatttaattttatg 579255  T
Q  492 aga 494  Q
    |||    
T  579256 aga 579258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 389 - 447
Target Start/End: Complemental strand, 10014372 - 10014314
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaa 447  Q
    |||||||||||||||||||||| ||||||||||||||||||  ||||| ||||| ||||    
T  10014372 aataagttttataggaagatgtaaaaacaattttcattggtagttgattatagagaaaa 10014314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 391 - 489
Target Start/End: Original strand, 34722622 - 34722720
Alignment:
Q  391 taagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttta 489  Q
    ||||||||||| |||||||| ||||||||||||||||| ||||| | ||  |||||| || | |  ||| | |||||||| ||||||||||||||||||    
T  34722622 taagttttataagaagatgtaaaaacaattttcattggctattggttatgcaaaaaatgaaaaggagagaaaattgaatgtaatttacatttaatttta 34722720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 376 - 436
Target Start/End: Original strand, 26724993 - 26725053
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgat 436  Q
    |||||||| || ||||||||||| |  |||||||| |||||||||||||||||||||||||    
T  26724993 gtgttttctttggaataagttttctgagaagatgtaaaaacaattttcattggttattgat 26725053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 376 - 488
Target Start/End: Original strand, 30454727 - 30454838
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 475  Q
    ||||| |||||  |||||||||||||| ||||||| ||||||||||| ||||||||||| | || || |||| || ||   ||||| |||||||||| ||    
T  30454727 gtgttatccttgaaataagttttatagaaagatgtaaaaacaatttt-attggttattggttattgagaaaatgaaagagagagcaaattgaatgcactt 30454825  T
Q  476 tacatttaatttt 488  Q
    | |||||||||||    
T  30454826 tgcatttaatttt 30454838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 396 - 495
Target Start/End: Original strand, 14752230 - 14752329
Alignment:
Q  396 tttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacgagaa 495  Q
    ||||||||||||||| ||||||||||||||||  ||||| | || ||||||| || ||   ||| | |||||||| ||||| |||||||||||| |||||    
T  14752230 tttataggaagatgtaaaaacaattttcattgactattggttatggaaaaaatgaaagagagagaaaattgaatgtaatttgcatttaattttatgagaa 14752329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 488
Target Start/End: Original strand, 22456023 - 22456122
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 488  Q
    |||||||||||||||||||| | ||||||||||| ||||||  ||||| ||||| |||| || |    ||||| |||||||||| ||| |||||||||||    
T  22456023 aataagttttataggaagatataaaaacaattttgattggtagttgattatagagaaaatgaaaaagagagcaaattgaatgcattttgcatttaatttt 22456122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 376 - 495
Target Start/End: Complemental strand, 28875528 - 28875409
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 475  Q
    |||||||| || ||| |||||||||| |||||||| ||||||||||||||||| ||||| | || || |||| || || |  || | |||||||| ||||    
T  28875528 gtgttttctttggaaaaagttttataagaagatgtaaaaacaattttcattggctattggttatggagaaaatgaaagaaaaagaaaattgaatgtaatt 28875429  T
Q  476 tacatttaattttacgagaa 495  Q
    |  ||||||||||| |||||    
T  28875428 tgtatttaattttatgagaa 28875409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 392 - 495
Target Start/End: Complemental strand, 35963258 - 35963155
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 491  Q
    ||||||||||||||||||  ||||||||||| ||||||||||| | || || |||| || ||   ||| | ||| |||||||||| |||||||||||| |    
T  35963258 aagttttataggaagatggaaaaacaatttttattggttattggttatggagaaaatgaaagagagagaaaattaaatgcaatttgcatttaattttatg 35963159  T
Q  492 agaa 495  Q
    ||||    
T  35963158 agaa 35963155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 392 - 495
Target Start/End: Complemental strand, 47864297 - 47864194
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 491  Q
    ||||||||||||||||||| ||||||||||||||||  ||||||| ||  |||||| || ||   ||  | |||||||| ||||| |||||||||||| |    
T  47864297 aagttttataggaagatgtaaaaacaattttcattgactattgattatgaaaaaaatgaaagagagaaaaaattgaatgtaatttgcatttaattttatg 47864198  T
Q  492 agaa 495  Q
    ||||    
T  47864197 agaa 47864194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 488
Target Start/End: Complemental strand, 48291925 - 48291826
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 488  Q
    |||||||||||||||||| ||| |||| |||||||||||||  ||||| | |||||||| || |    ||||| |||||||||| ||| |||||||||||    
T  48291925 aataagttttataggaaggtgtaaaaataattttcattggtagttgattacagaaaaaatgaaaaagagagcaaattgaatgcactttccatttaatttt 48291826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 495
Target Start/End: Original strand, 11054330 - 11054429
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 491  Q
    ||||||||||||||||| | ||||||||||||||||| ||||| | || ||||||| ||    | ||| | |||||||| ||||| |||||||||||| |    
T  11054330 aagttttataggaagatttaaaaacaattttcattggctattggttatggaaaaaatga----aagagaaaattgaatgtaatttgcatttaattttatg 11054425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 433
Target Start/End: Original strand, 7886632 - 7886676
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggttatt 433  Q
    ||||| |||||||| ||||||| ||||||||||||||||||||||    
T  7886632 aataaattttatagaaagatgtaaaaacaattttcattggttatt 7886676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 429
Target Start/End: Complemental strand, 21214344 - 21214304
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggt 429  Q
    |||||||||||||| ||||||| ||||||||||||||||||    
T  21214344 aataagttttatagaaagatgtaaaaacaattttcattggt 21214304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 433
Target Start/End: Complemental strand, 31292726 - 31292670
Alignment:
Q  377 tgttttccttagaataagttttataggaagatgttaaaacaattttcattggttatt 433  Q
    |||| ||||| |||| |||| ||| ||||||||| ||||||||||||||||||||||    
T  31292726 tgttctccttggaattagttctatgggaagatgtaaaaacaattttcattggttatt 31292670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 447
Target Start/End: Complemental strand, 36546661 - 36546593
Alignment:
Q  379 ttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaa 447  Q
    ||||| || ||| |||||| |||||||||||| ||| ||||||||||||| ||||| | ||||||||||    
T  36546661 ttttctttggaaaaagtttcataggaagatgtaaaaccaattttcattggctattggttatagaaaaaa 36546593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 447
Target Start/End: Original strand, 36561654 - 36561722
Alignment:
Q  379 ttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaa 447  Q
    ||||| || ||| |||||| |||||||||||| ||| ||||||||||||| ||||| | ||||||||||    
T  36561654 ttttctttggaaaaagtttcataggaagatgtaaaaccaattttcattggctattggttatagaaaaaa 36561722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 434
Target Start/End: Complemental strand, 2927408 - 2927353
Alignment:
Q  379 ttttccttagaataagttttataggaagatgttaaaacaattttcattggttattg 434  Q
    ||||| || ||||||||||||| ||||||||| |||| |||||||||||| |||||    
T  2927408 ttttctttggaataagttttatgggaagatgtaaaaataattttcattggctattg 2927353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 433
Target Start/End: Original strand, 3084188 - 3084239
Alignment:
Q  382 tccttagaataagttttataggaagatgttaaaacaattttcattggttatt 433  Q
    |||||| ||| |||||||| ||||||||| |||||||| |||||||||||||    
T  3084188 tccttaaaattagttttatgggaagatgtaaaaacaatattcattggttatt 3084239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 427
Target Start/End: Original strand, 50651055 - 50651090
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattg 427  Q
    ||||||||||||||||||| ||||||||||||||||    
T  50651055 aagttttataggaagatgtaaaaacaattttcattg 50651090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 388 - 426
Target Start/End: Complemental strand, 3972385 - 3972347
Alignment:
Q  388 gaataagttttataggaagatgttaaaacaattttcatt 426  Q
    ||||||||||||| ||||||||| |||||||||||||||    
T  3972385 gaataagttttatgggaagatgtaaaaacaattttcatt 3972347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 388 - 426
Target Start/End: Original strand, 3997493 - 3997531
Alignment:
Q  388 gaataagttttataggaagatgttaaaacaattttcatt 426  Q
    ||||||||||||| ||||||||| |||||||||||||||    
T  3997493 gaataagttttatgggaagatgtaaaaacaattttcatt 3997531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 396 - 434
Target Start/End: Complemental strand, 6438185 - 6438147
Alignment:
Q  396 tttataggaagatgttaaaacaattttcattggttattg 434  Q
    ||||||||||||||| ||||||||||||||||| |||||    
T  6438185 tttataggaagatgtaaaaacaattttcattggctattg 6438147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 392 - 434
Target Start/End: Original strand, 23910531 - 23910573
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattg 434  Q
    ||||||||||||||||||| |||| |||||||||||| |||||    
T  23910531 aagttttataggaagatgtaaaaataattttcattggctattg 23910573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 376 - 434
Target Start/End: Original strand, 32619832 - 32619890
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattg 434  Q
    |||||||| || ||||| |||||||| |||||||| |||| |||||||||||| |||||    
T  32619832 gtgttttctttggaataggttttataagaagatgtaaaaataattttcattggctattg 32619890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 436
Target Start/End: Complemental strand, 36151038 - 36150980
Alignment:
Q  379 ttttccttagaataagttttataggaagatgttaaa-acaattttcattggttattgat 436  Q
    |||| ||||||||||||||||| ||||||||| ||| | |||||| |||||||||||||    
T  36151038 tttttcttagaataagttttatgggaagatgtaaaacataatttttattggttattgat 36150980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 392 - 434
Target Start/End: Original strand, 46711676 - 46711718
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattg 434  Q
    ||||||||||||||||||| |||||||| |||||||| |||||    
T  46711676 aagttttataggaagatgtaaaaacaatattcattggctattg 46711718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 433
Target Start/End: Complemental strand, 9264657 - 9264616
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttatt 433  Q
    |||||||||| |||||||| ||||||||||||||||| ||||    
T  9264657 aagttttatatgaagatgtaaaaacaattttcattggctatt 9264616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 447
Target Start/End: Complemental strand, 29235306 - 29235238
Alignment:
Q  379 ttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaa 447  Q
    ||||| |||||| | |||| |||||||||||| |||| |||||||||||| ||||| | || |||||||    
T  29235306 ttttctttagaaaacgtttaataggaagatgtaaaaataattttcattggctattggttatggaaaaaa 29235238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 389 - 429
Target Start/End: Complemental strand, 38401483 - 38401443
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggt 429  Q
    ||||||||||||||| |||||| |||| |||||||||||||    
T  38401483 aataagttttatagggagatgtaaaaataattttcattggt 38401443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 376 - 432
Target Start/End: Original strand, 41936200 - 41936256
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttat 432  Q
    |||||||  ||||||||||||| || ||||||||| ||| ||||||| |||||||||    
T  41936200 gtgttttatttagaataagtttcatgggaagatgtaaaatcaattttaattggttat 41936256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 4e-21; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 376 - 495
Target Start/End: Original strand, 35129097 - 35129217
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgtta-aaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaat 474  Q
    |||||||| || ||| ||||||||||||||||||| | |||||||||||||||||||||| | || ||||||| || || | ||| | |||||||| |||    
T  35129097 gtgttttctttggaaaaagttttataggaagatgtaataaacaattttcattggttattggttatggaaaaaatgaaagaaagagaaaattgaatgtaat 35129196  T
Q  475 ttacatttaattttacgagaa 495  Q
    || ||||||||||||||||||    
T  35129197 ttgcatttaattttacgagaa 35129217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 392 - 495
Target Start/End: Original strand, 3095778 - 3095881
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 491  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||| || ||||||| || |  | ||| | |||||||| ||||| |||||||||||| |    
T  3095778 aagttttataggaagatgtaaaaacaattttcattggctattgattatggaaaaaatgaaataaagagaaaattgaatgtaatttgcatttaattttatg 3095877  T
Q  492 agaa 495  Q
    ||||    
T  3095878 agaa 3095881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 376 - 495
Target Start/End: Original strand, 11082288 - 11082407
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 475  Q
    |||||||| || ||| |||||||||||| |||||| ||||||||||||||||| ||||| | || ||||||| || || | ||| | |||||||| ||||    
T  11082288 gtgttttctttggaaaaagttttatagggagatgtaaaaacaattttcattggctattggttatggaaaaaatgaaagaaagagaaaattgaatgtaatt 11082387  T
Q  476 tacatttaattttacgagaa 495  Q
    | |||||||||||| |||||    
T  11082388 tgcatttaattttatgagaa 11082407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 389 - 488
Target Start/End: Complemental strand, 16524482 - 16524384
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 488  Q
    |||||||||||||||||||||| ||||||||||||||||||  ||||| ||||| |||| || | || || || |||||||||| ||| |||||||||||    
T  16524482 aataagttttataggaagatgtaaaaacaattttcattggtagttgattatagagaaaatgaaaaga-gaacaaattgaatgcactttgcatttaatttt 16524384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 391 - 435
Target Start/End: Original strand, 5300658 - 5300702
Alignment:
Q  391 taagttttataggaagatgttaaaacaattttcattggttattga 435  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  5300658 taagttttataggaagatgtaaaaacaattttcattggttattga 5300702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 389 - 488
Target Start/End: Complemental strand, 4032090 - 4031991
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 488  Q
    |||||||||||| ||||||||| ||||||||||||||||||  ||||| ||||| |||| || |    ||||| |||||||||| ||| |||||||||||    
T  4032090 aataagttttatcggaagatgtaaaaacaattttcattggtagttgattatagagaaaatgaaaaagagagcaaattgaatgcactttgcatttaatttt 4031991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 389 - 488
Target Start/End: Complemental strand, 4988046 - 4987947
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 488  Q
    |||||||||||||||||||||| |||| |||||||||||||  ||||| ||||| |||| || |    ||||| |||||||||| ||| |||||||||||    
T  4988046 aataagttttataggaagatgtaaaaataattttcattggtagttgattatagagaaaatgaaaatgagagcaaattgaatgcattttgcatttaatttt 4987947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 389 - 484
Target Start/End: Original strand, 16013488 - 16013583
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaa 484  Q
    |||||||||||||||||||||| ||||||||||||||||||  ||||| ||||| |||| || |    ||||| |||||||||| ||| |||||||    
T  16013488 aataagttttataggaagatgtaaaaacaattttcattggtagttgattatagagaaaatgaaaaagagagcaaattgaatgcatttttcatttaa 16013583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 495
Target Start/End: Complemental strand, 21542536 - 21542417
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 475  Q
    |||||||| || ||| ||||||||||||||||||| ||||||||||| ||||| ||||| | || ||||||| || || |  || | |||||||| ||||    
T  21542536 gtgttttctttggaaaaagttttataggaagatgtaaaaacaatttttattggctattggttatggaaaaaatgaaagaaaaagaaaattgaatgtaatt 21542437  T
Q  476 tacatttaattttacgagaa 495  Q
    | |||||||| ||| |||||    
T  21542436 tgcatttaatattatgagaa 21542417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 376 - 439
Target Start/End: Complemental strand, 21964071 - 21964008
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcat 439  Q
    ||||| |||||| |||||||||||| | ||||||| |||| |||||| ||||||||||||||||    
T  21964071 gtgttctccttaaaataagttttatggaaagatgtaaaaataatttttattggttattgatcat 21964008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 396 - 495
Target Start/End: Original strand, 34177704 - 34177803
Alignment:
Q  396 tttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacgagaa 495  Q
    |||||||| |||||| ||||||||||||||||| ||||| | || ||||||| || || | |||   |||||||| ||||| |||||||||||| |||||    
T  34177704 tttatagggagatgtaaaaacaattttcattggctattggttatggaaaaaatgaaagaaagagataattgaatgtaatttgcatttaattttatgagaa 34177803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 434
Target Start/End: Original strand, 30794247 - 30794293
Alignment:
Q  388 gaataagttttataggaagatgttaaaacaattttcattggttattg 434  Q
    ||||||||||||||||||||||| |||||| |||||||||| |||||    
T  30794247 gaataagttttataggaagatgtaaaaacatttttcattggctattg 30794293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 447
Target Start/End: Original strand, 7274921 - 7274989
Alignment:
Q  379 ttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaa 447  Q
    ||||| || |||||||||| || ||||||||| ||||||||||||||||| ||||| | || |||||||    
T  7274921 ttttctttggaataagtttcatgggaagatgtaaaaacaattttcattggctattggttatggaaaaaa 7274989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 488
Target Start/End: Complemental strand, 3888530 - 3888431
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 488  Q
    ||||||||||||||||||||||  ||||||||||||| |||  ||||| ||||| |||| || |    || || |||||||||| ||| |||||||||||    
T  3888530 aataagttttataggaagatgtagaaacaattttcatgggtagttgattatagagaaaatgaaaaagagaacaaattgaatgcactttgcatttaatttt 3888431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 391 - 447
Target Start/End: Original strand, 5881810 - 5881866
Alignment:
Q  391 taagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaa 447  Q
    ||||||| |||| ||||||| ||||||||||| |||||||||| || ||||| ||||    
T  5881810 taagtttcatagaaagatgtaaaaacaattttaattggttattaattatagagaaaa 5881866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 376 - 495
Target Start/End: Original strand, 25737669 - 25737788
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 475  Q
    |||||||| || ||| ||||||||||||||||||| ||||||||||||||||| ||||| | || ||||||| || || | ||| | |||||||| ||||    
T  25737669 gtgttttctttggaaaaagttttataggaagatgtaaaaacaattttcattggctattggttatggaaaaaatgaaagaaagagaaaattgaatgtaatt 25737768  T
Q  476 tacatttaattttacgagaa 495  Q
    | |||||||||||| |||||    
T  25737769 tgcatttaattttatgagaa 25737788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 392 - 495
Target Start/End: Complemental strand, 14805972 - 14805869
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 491  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| | || ||||||| || || | ||| | |||||||| ||||| |||||||||||| |    
T  14805972 aagttttataggaagatgtaaaaacaattttcattggctattggttatggaaaaaatgaaagaaagagaaaattgaatgtaatttgcatttaattttatg 14805873  T
Q  492 agaa 495  Q
    ||||    
T  14805872 agaa 14805869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 392 - 495
Target Start/End: Complemental strand, 15252966 - 15252863
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 491  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| | || ||||||| || || | ||| | |||||||| ||||| |||||||||||| |    
T  15252966 aagttttataggaagatgtaaaaacaattttcattggctattggttatggaaaaaatgaaagaaagagaaaattgaatgtaatttgcatttaattttatg 15252867  T
Q  492 agaa 495  Q
    ||||    
T  15252866 agaa 15252863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 376 - 495
Target Start/End: Complemental strand, 35923370 - 35923251
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 475  Q
    |||||||| || ||| ||||||||||| ||||||| ||||||||||||||||| ||||| | || ||||||| || || | ||| | |||||||| ||||    
T  35923370 gtgttttctttggaaaaagttttatagaaagatgtaaaaacaattttcattggctattggttatggaaaaaatgaaagaaagagaaaattgaatgtaatt 35923271  T
Q  476 tacatttaattttacgagaa 495  Q
    | |||||||||||| |||||    
T  35923270 tgcatttaattttatgagaa 35923251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 376 - 495
Target Start/End: Complemental strand, 45486073 - 45485954
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 475  Q
    |||||||| || ||| ||||||||||||||||||| |||| |||||||||||| ||||| | || ||||||| || || | ||| | |||||||| ||||    
T  45486073 gtgttttctttggaaaaagttttataggaagatgtaaaaataattttcattggctattggttatggaaaaaatgaaagaaagagaaaattgaatgtaatt 45485974  T
Q  476 tacatttaattttacgagaa 495  Q
    | |||||||||||| |||||    
T  45485973 tgcatttaattttatgagaa 45485954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 392 - 495
Target Start/End: Original strand, 46760315 - 46760418
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 491  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| | || ||||||| || || | ||| | |||||||| ||||| |||||||||||| |    
T  46760315 aagttttataggaagatgtaaaaacaattttcattggctattggttatggaaaaaatgaaagaaagagaatattgaatgtaatttgcatttaattttatg 46760414  T
Q  492 agaa 495  Q
    ||||    
T  46760415 agaa 46760418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 376 - 489
Target Start/End: Original strand, 4910675 - 4910788
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 475  Q
    |||||||| |||||| ||||||||||||||||||| |||| |||||||||||| ||||||| || ||||||| || ||   ||  | |||||||| ||||    
T  4910675 gtgttttctttagaaaaagttttataggaagatgtaaaaataattttcattggctattgattatggaaaaaatgaaagagagataaaattgaatgtaatt 4910774  T
Q  476 tacatttaatttta 489  Q
    | ||||||||||||    
T  4910775 tgcatttaatttta 4910788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 329 - 487
Target Start/End: Original strand, 19912762 - 19912922
Alignment:
Q  329 cacatttattaagaacactaaaacatga---tttggagtatagnnnnnnngtgttttccttagaataagttttataggaagatgttaaaacaattttcat 425  Q
    ||||||||||||||| |||||||||| |   ||||||||||||       |||||||| || ||| ||||||||||| || |||| ||||||||||||||    
T  19912762 cacatttattaagaaaactaaaacataagaatttggagtatagtttttt-gtgttttctttggaaaaagttttatagtaaaatgtaaaaacaattttcat 19912860  T
Q  426 tggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattt 487  Q
    ||||||||| | || ||||||| || || | ||| | |||||||| ||||| ||||||||||    
T  19912861 tggttattggttatggaaaaaatgaaagaaagagaaaattgaatgtaatttgcatttaattt 19912922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 385 - 447
Target Start/End: Original strand, 8015723 - 8015786
Alignment:
Q  385 ttagaata-agttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaa 447  Q
    |||||||| ||||||||| |||||||| ||||||||||| ||||||||||||| ||||||||||    
T  8015723 ttagaatatagttttataagaagatgtaaaaacaatttttattggttattgattatagaaaaaa 8015786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 495
Target Start/End: Complemental strand, 25944694 - 25944575
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 475  Q
    |||||||| || ||| ||||||||||||||||||| |||||||||||||||||  |||| | || |||||||  | ||   ||| | |||||||| ||||    
T  25944694 gtgttttctttggaaaaagttttataggaagatgtaaaaacaattttcattggccattggttatggaaaaaataaaagagagagaaaattgaatgtaatt 25944595  T
Q  476 tacatttaattttacgagaa 495  Q
    | |||||||||||| |||||    
T  25944594 tgcatttaattttatgagaa 25944575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 376 - 488
Target Start/End: Complemental strand, 39170652 - 39170540
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 475  Q
    ||||| |||||  ||||||||||||| |||||||| ||||||||||||||| || |||||| || || |||| || ||    |||| |||||||||| ||    
T  39170652 gtgttatccttgaaataagttttatacgaagatgtaaaaacaattttcatttgtcattgattattgagaaaatgaaagagatagcaaattgaatgcactt 39170553  T
Q  476 tacatttaatttt 488  Q
    | |||||||||||    
T  39170552 tgcatttaatttt 39170540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 376 - 428
Target Start/End: Complemental strand, 47779722 - 47779670
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattgg 428  Q
    |||||||| ||||||||||||| || ||||||||| |||||||||||||||||    
T  47779722 gtgttttctttagaataagtttcatgggaagatgtaaaaacaattttcattgg 47779670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 376 - 431
Target Start/End: Complemental strand, 10248646 - 10248591
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggtta 431  Q
    ||||| |||||  |||||||||||||| ||||||| ||||||||||||||||||||    
T  10248646 gtgttatccttgaaataagttttatagaaagatgtaaaaacaattttcattggtta 10248591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 392 - 495
Target Start/End: Complemental strand, 18102632 - 18102529
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 491  Q
    ||||||||||||||||||| |||||||||||||||||  |||| | || ||||||| || ||   | | | |||||||| ||||| |||||||||||| |    
T  18102632 aagttttataggaagatgtaaaaacaattttcattggccattggttatggaaaaaatgaaagagagtgaaaattgaatgtaatttgcatttaattttatg 18102533  T
Q  492 agaa 495  Q
    ||||    
T  18102532 agaa 18102529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 392 - 495
Target Start/End: Original strand, 20123738 - 20123841
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 491  Q
    ||||||||||| ||||||| ||||||||||||||||| ||||| | || ||||||| || ||    || | |||||||| ||||| |||||||||||| |    
T  20123738 aagttttatagcaagatgtaaaaacaattttcattggctattgcttatggaaaaaatgaaagagaaagaaaattgaatgtaatttgcatttaattttatg 20123837  T
Q  492 agaa 495  Q
    ||||    
T  20123838 agaa 20123841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 488
Target Start/End: Original strand, 31769017 - 31769116
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 488  Q
    |||||||||||||||||||||| |||||||||||||||| |  ||||| ||||| ||||  | |    ||||| |||||||||| ||| |||||||||||    
T  31769017 aataagttttataggaagatgtaaaaacaattttcattgatagttgattatagagaaaataaaaatgagagcaaattgaatgcactttgcatttaatttt 31769116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 434
Target Start/End: Complemental strand, 6191147 - 6191105
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattg 434  Q
    ||||||||||||||||||| ||||||||||||||||| |||||    
T  6191147 aagttttataggaagatgtaaaaacaattttcattggctattg 6191105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 378 - 427
Target Start/End: Original strand, 31549947 - 31549996
Alignment:
Q  378 gttttccttagaataagttttataggaagatgttaaaacaattttcattg 427  Q
    |||||| ||||||||| |||||||||||||||| ||||||| ||||||||    
T  31549947 gttttctttagaataaattttataggaagatgtaaaaacaactttcattg 31549996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 434
Target Start/End: Original strand, 24151638 - 24151682
Alignment:
Q  390 ataagttttataggaagatgttaaaacaattttcattggttattg 434  Q
    ||||||||||||||||||||| ||||||||||||| || ||||||    
T  24151638 ataagttttataggaagatgtaaaaacaattttcactgattattg 24151682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 447
Target Start/End: Complemental strand, 22632207 - 22632136
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaa 447  Q
    |||||||| ||  ||||||||| || ||||||||| ||||||||||||||||| ||||| | || |||||||    
T  22632207 gtgttttctttgaaataagtttcatgggaagatgtaaaaacaattttcattggatattggttatggaaaaaa 22632136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 488
Target Start/End: Complemental strand, 38260421 - 38260322
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 488  Q
    |||||||||||||| ||| ||| |||| ||||||||||||||||| || || || |||| || ||   ||||| ||| |||||| ||| |||||||||||    
T  38260421 aataagttttatagaaagttgtaaaaataattttcattggttatttattattgagaaaatgaaagagagagcaaattaaatgcactttgcatttaatttt 38260322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 447
Target Start/End: Original strand, 47557663 - 47557714
Alignment:
Q  396 tttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaa 447  Q
    ||||||||||||||| ||||||||||||||||| |||| || || |||||||    
T  47557663 tttataggaagatgtaaaaacaattttcattggctattaattatggaaaaaa 47557714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 392 - 434
Target Start/End: Complemental strand, 4069105 - 4069063
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattg 434  Q
    ||||||||||| ||||||| |||| ||||||||||||||||||    
T  4069105 aagttttatagaaagatgtaaaaagaattttcattggttattg 4069063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 392 - 434
Target Start/End: Original strand, 12632402 - 12632444
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattg 434  Q
    |||||| |||||||||||| ||||||||||||||||| |||||    
T  12632402 aagtttcataggaagatgtaaaaacaattttcattggctattg 12632444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 447
Target Start/End: Original strand, 35888024 - 35888082
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaa 447  Q
    ||||| |||||||||||||||| ||||||||||||||| ||  ||||| ||||| ||||    
T  35888024 aataacttttataggaagatgtaaaaacaattttcattagtagttgattatagagaaaa 35888082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 490
Target Start/End: Original strand, 18800856 - 18800889
Alignment:
Q  457 gagcacattgaatgcaatttacatttaattttac 490  Q
    ||||| ||||||||||||||||||||||||||||    
T  18800856 gagcaaattgaatgcaatttacatttaattttac 18800889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 431
Target Start/End: Complemental strand, 36576525 - 36576476
Alignment:
Q  382 tccttagaataagttttataggaagatgttaaaacaattttcattggtta 431  Q
    |||||||||||||||| || | ||||||| |||| |||||||||||||||    
T  36576525 tccttagaataagtttcatggaaagatgtaaaaataattttcattggtta 36576476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 431
Target Start/End: Complemental strand, 48879495 - 48879446
Alignment:
Q  382 tccttagaataagttttataggaagatgttaaaacaattttcattggtta 431  Q
    ||||| ||||||||||||||| ||||||| |||| |||| ||||||||||    
T  48879495 tccttggaataagttttatagaaagatgtaaaaataattctcattggtta 48879446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 392 - 428
Target Start/End: Complemental strand, 9158191 - 9158155
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattgg 428  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  9158191 aagttttataggaagatgtaaaaacaattttctttgg 9158155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 46)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 376 - 495
Target Start/End: Complemental strand, 47867995 - 47867876
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 475  Q
    |||||||| || ||| ||||||||||||||||||| ||||||||||||||||| ||||| | || ||||||| || || | ||| | |||||||| ||||    
T  47867995 gtgttttctttggaaaaagttttataggaagatgtaaaaacaattttcattggctattggttatggaaaaaatgaaagaaagagaaaattgaatgtaatt 47867896  T
Q  476 tacatttaattttacgagaa 495  Q
    | |||||||||||| |||||    
T  47867895 tgcatttaattttatgagaa 47867876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 329 - 495
Target Start/End: Complemental strand, 4058880 - 4058712
Alignment:
Q  329 cacatttattaagaacactaaaacatga---tttggagtatagnnnnnnngtgttttccttagaataagttttataggaagatgttaaaacaattttcat 425  Q
    ||||||||||||||| |||||||||| |   ||||||||||||       |||||||| ||  || ||||||||||||||||||| ||||||||||||||    
T  4058880 cacatttattaagaaaactaaaacataagaatttggagtatagtttttt-gtgttttctttgaaaaaagttttataggaagatgtaaaaacaattttcat 4058782  T
Q  426 tggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacgagaa 495  Q
    ||||||||| | || ||||||| || ||   ||| | |||||||| ||||| |||||||||||| |||||    
T  4058781 tggttattggttatggaaaaaatgaaagagagagaaaattgaatgaaatttgcatttaattttatgagaa 4058712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 376 - 495
Target Start/End: Complemental strand, 20281707 - 20281588
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 475  Q
    |||||||| || ||| ||||||||||||||||||| ||||||||||||||||| ||||| | || ||||||| || || |  || | |||||||| ||||    
T  20281707 gtgttttctttggaaaaagttttataggaagatgtaaaaacaattttcattggctattggttatggaaaaaatgaaagaaaaagaaaattgaatgtaatt 20281608  T
Q  476 tacatttaattttacgagaa 495  Q
    | |||||||||||| |||||    
T  20281607 tgcatttaattttatgagaa 20281588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 389 - 495
Target Start/End: Original strand, 17794590 - 17794696
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggag-gagcacattgaatgcaatttacatttaattt 487  Q
    ||||| |||||||||||||||| ||||||||||||||||| ||||||| || ||||||  | || ||| ||| | |||||||| ||||||||||||||||    
T  17794590 aataaattttataggaagatgtaaaaacaattttcattggctattgattatggaaaaattg-gaagagagagaaaattgaatgtaatttacatttaattt 17794688  T
Q  488 tacgagaa 495  Q
    || |||||    
T  17794689 tatgagaa 17794696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 376 - 489
Target Start/End: Original strand, 56318106 - 56318219
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 475  Q
    |||||||| || ||| ||| ||||||||||||||| ||||||||||||||| | ||||| | || ||||||| || ||   ||| | |||||||| ||||    
T  56318106 gtgttttctttggaaaaaggtttataggaagatgtaaaaacaattttcattagctattggttatggaaaaaatgaaagagagagaaaattgaatgtaatt 56318205  T
Q  476 tacatttaatttta 489  Q
    ||||||||||||||    
T  56318206 tacatttaatttta 56318219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 376 - 476
Target Start/End: Complemental strand, 7654733 - 7654633
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 475  Q
    |||||||| || ||| ||||||||||||||||| | ||||||||||||||||| ||||||| || ||||||| || || | ||| | |||||||| ||||    
T  7654733 gtgttttctttggaaaaagttttataggaagatataaaaacaattttcattggctattgattatggaaaaaatgaaagaaagagaaaattgaatgtaatt 7654634  T
Q  476 t 476  Q
    |    
T  7654633 t 7654633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 395 - 495
Target Start/End: Complemental strand, 29203603 - 29203503
Alignment:
Q  395 ttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacgaga 494  Q
    |||||||||||||||| ||||||||||||||||| ||||| | || ||||||| || ||   ||| | |||||||| ||||| |||||||||||| ||||    
T  29203603 ttttataggaagatgtaaaaacaattttcattggctattggttatggaaaaaatgaaagagagagaaaattgaatgtaatttgcatttaattttatgaga 29203504  T
Q  495 a 495  Q
    |    
T  29203503 a 29203503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 495
Target Start/End: Complemental strand, 2229363 - 2229244
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 475  Q
    |||||||| || ||| ||||||||||||||||||| ||||||||||| ||||| ||||| | || ||||||| || || |  || | |||||||| ||||    
T  2229363 gtgttttctttggaaaaagttttataggaagatgtaaaaacaatttttattggctattggttatggaaaaaatgaaagaaaaagaaaattgaatgtaatt 2229264  T
Q  476 tacatttaattttacgagaa 495  Q
    | |||||||| ||| |||||    
T  2229263 tgcatttaatattatgagaa 2229244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 495
Target Start/End: Complemental strand, 14332876 - 14332757
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 475  Q
    |||||||| || ||| ||||||||||||||||||| ||||||||||| |||||  |||| | ||  |||||| || || | ||| | |||||||| ||||    
T  14332876 gtgttttctttggaaaaagttttataggaagatgtaaaaacaatttttattggccattggttatgaaaaaaatgaaagaaagagaaaattgaatgtaatt 14332777  T
Q  476 tacatttaattttacgagaa 495  Q
    | |||||||||||| |||||    
T  14332776 tgcatttaattttatgagaa 14332757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 392 - 495
Target Start/End: Complemental strand, 20716280 - 20716177
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 491  Q
    ||||||||||| ||||||| ||||||||||||||||| ||||| | || ||||||| || ||   ||| | |||||||| ||||| |||||||||||| |    
T  20716280 aagttttatagaaagatgtaaaaacaattttcattggctattggttatggaaaaaatgaaagagtgagaaaattgaatgtaatttgcatttaattttatg 20716181  T
Q  492 agaa 495  Q
    ||||    
T  20716180 agaa 20716177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 394 - 488
Target Start/End: Original strand, 23978169 - 23978263
Alignment:
Q  394 gttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 488  Q
    ||||||||||||||||| ||||||||||||||||||  ||||| ||||| |||| || |    ||||| |||||||||| ||| |||||||||||    
T  23978169 gttttataggaagatgtaaaaacaattttcattggtagttgattatagagaaaatgaaaaagagagcaaattgaatgcactttgcatttaatttt 23978263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 392 - 433
Target Start/End: Original strand, 16604898 - 16604939
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttatt 433  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  16604898 aagttttataggaagatgttaaaacaattttcattggctatt 16604939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 376 - 433
Target Start/End: Original strand, 28669037 - 28669094
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttatt 433  Q
    |||||||| |||||| | |||||||||||| |||| ||||||||||||||||||||||    
T  28669037 gtgttttctttagaaaaggttttataggaaaatgtaaaaacaattttcattggttatt 28669094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 376 - 433
Target Start/End: Complemental strand, 40553885 - 40553828
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttatt 433  Q
    ||||| |||||||||||||||| |||| ||||||| ||||||| ||||||||||||||    
T  40553885 gtgttatccttagaataagtttcatagaaagatgtaaaaacaagtttcattggttatt 40553828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 389 - 430
Target Start/End: Original strand, 46070571 - 46070612
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggtt 430  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  46070571 aataagttttataggaagatgtaaaaacaattttcattggtt 46070612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 376 - 428
Target Start/End: Original strand, 5483314 - 5483366
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattgg 428  Q
    |||||||| ||| ||||||||| |||||||||||| |||||||||||||||||    
T  5483314 gtgttttctttaaaataagtttaataggaagatgtaaaaacaattttcattgg 5483366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 376 - 488
Target Start/End: Original strand, 5841815 - 5841927
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 475  Q
    ||||| |||||  ||||| |||||||||||||||| |||| |||||||||||||||||| | || ||||||| || ||   ||||| ||||| |||| ||    
T  5841815 gtgttatccttgaaataaattttataggaagatgtaaaaataattttcattggttattggttattgaaaaaatgaaagagagagcaaattgattgcactt 5841914  T
Q  476 tacatttaatttt 488  Q
    | |||| ||||||    
T  5841915 tgcattgaatttt 5841927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 429
Target Start/End: Complemental strand, 49080360 - 49080320
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggt 429  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  49080360 aataagttttataggaagatgtaaaaacaattttcattggt 49080320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 488
Target Start/End: Original strand, 8178288 - 8178387
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 488  Q
    ||||||||||||| |||||||| ||||||||||  ||||||||||| | || || |||| || ||   ||||| |||||||||| ||| |||||||||||    
T  8178288 aataagttttataagaagatgtaaaaacaatttgtattggttattggttattgagaaaatgaaagagagagcaaattgaatgcactttgcatttaatttt 8178387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 388 - 483
Target Start/End: Original strand, 17799182 - 17799277
Alignment:
Q  388 gaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacattta 483  Q
    |||| |||||||| ||||||||| ||||||||||||||||||||||  | || || |||| ||||||  || || ||| |||||||||| ||||||    
T  17799182 gaattagttttatgggaagatgtaaaaacaattttcattggttatttgttatggagaaaatgagagggagaacaaattaaatgcaatttgcattta 17799277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 392 - 495
Target Start/End: Complemental strand, 26916425 - 26916322
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 491  Q
    ||||||||||||||||||| ||||||||||| ||||| ||||| | || ||||||| || || |  |  | |||||||| ||||| |||||||||||| |    
T  26916425 aagttttataggaagatgtaaaaacaatttttattggctattggttatggaaaaaatgaaagaaaaataaaattgaatgtaatttgcatttaattttatg 26916326  T
Q  492 agaa 495  Q
    ||||    
T  26916325 agaa 26916322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 376 - 447
Target Start/End: Original strand, 28142658 - 28142729
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaa 447  Q
    ||||| || ||| |||||||||||||||| ||||| ||||||||||||||||||  ||||| ||||| ||||    
T  28142658 gtgttatctttaaaataagttttataggaggatgtaaaaacaattttcattggtagttgattatagagaaaa 28142729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 376 - 427
Target Start/End: Complemental strand, 29511541 - 29511490
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattg 427  Q
    ||||| || ||| |||||||||||||||||||||| ||||||||||||||||    
T  29511541 gtgttatctttaaaataagttttataggaagatgtaaaaacaattttcattg 29511490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 376 - 447
Target Start/End: Original strand, 35310778 - 35310849
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaa 447  Q
    |||||||| ||||||||||||| || | ||||||| ||||||||||||||||| ||||| | || |||||||    
T  35310778 gtgttttctttagaataagtttcatggaaagatgtaaaaacaattttcattggctattggttatggaaaaaa 35310849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 392 - 489
Target Start/End: Original strand, 41414663 - 41414759
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttta 489  Q
    ||||||||||||||||||| ||||||||||| ||||| ||||||| || ||||||| || ||   ||  | |||||||| ||||| ||||||||||||    
T  41414663 aagttttataggaagatgtaaaaacaatttttattggctattgattat-gaaaaaatgaaagagagaaaaaattgaatgtaatttgcatttaatttta 41414759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 389 - 430
Target Start/End: Original strand, 47516240 - 47516281
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggtt 430  Q
    ||||||||||||||||||| || |||||||||||||||||||    
T  47516240 aataagttttataggaagaagtaaaaacaattttcattggtt 47516281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 495
Target Start/End: Original strand, 1585383 - 1585502
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggag-gagcacattgaatgcaat 474  Q
    |||||||| ||  ||||||||| || | ||||||||||||||||||| ||||| ||||||| || || |||| | || ||| ||| | |||||||| |||    
T  1585383 gtgttttctttgaaataagtttcatggaaagatgttaaaacaatttttattggctattgattatggagaaaatg-gaagagagagaaaattgaatgtaat 1585481  T
Q  475 ttacatttaattttacgagaa 495  Q
    || |||||||||||| |||||    
T  1585482 tttcatttaattttatgagaa 1585502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 488
Target Start/End: Original strand, 8013125 - 8013237
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 475  Q
    ||||| |||||  ||||||||| |||| ||||||| ||||||||||| ||||||||||  ||||||| |||| || ||   || || | ||||||||| |    
T  8013125 gtgttatccttgaaataagtttcatagaaagatgtaaaaacaatttttattggttattagtcatagagaaaatgaaagagagaacataatgaatgcaaat 8013224  T
Q  476 tacatttaatttt 488  Q
    | |||||||||||    
T  8013225 tgcatttaatttt 8013237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 396 - 488
Target Start/End: Original strand, 28318473 - 28318565
Alignment:
Q  396 tttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 488  Q
    ||||||||||||||| ||||||||||||||||||  ||||| ||||| |||| || |     || | |||||||||| |||||||||||||||    
T  28318473 tttataggaagatgtaaaaacaattttcattggtagttgattatagagaaaatgaaaaagctagtaaattgaatgcattttacatttaatttt 28318565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 428
Target Start/End: Original strand, 48793664 - 48793716
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattgg 428  Q
    |||||||| || |||||||||| || ||||||||| |||||||||||||||||    
T  48793664 gtgttttctttggaataagtttcatgggaagatgtaaaaacaattttcattgg 48793716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 436
Target Start/End: Complemental strand, 50145840 - 50145792
Alignment:
Q  388 gaataagttttataggaagatgttaaaacaattttcattggttattgat 436  Q
    ||||||||||||| ||||||||| || |||||||||||||| |||||||    
T  50145840 gaataagttttatgggaagatgtaaacacaattttcattggctattgat 50145792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 433
Target Start/End: Complemental strand, 55580785 - 55580729
Alignment:
Q  377 tgttttccttagaataagttttataggaagatgttaaaacaattttcattggttatt 433  Q
    ||||||| || ||| ||||| ||||||||||||| ||||||||||||||||| ||||    
T  55580785 tgttttctttggaaaaagttgtataggaagatgtaaaaacaattttcattggctatt 55580729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 488
Target Start/End: Original strand, 5064704 - 5064803
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 488  Q
    ||||||||||| |||||||||| ||||||||||||||| ||  ||||| ||||| |||| || |    ||| | |||||||||| ||| |||||||||||    
T  5064704 aataagttttaaaggaagatgtaaaaacaattttcattagtagttgattatagagaaaatgaaaaagagagtaaattgaatgcactttgcatttaatttt 5064803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 436
Target Start/End: Original strand, 21722731 - 21722778
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggttattgat 436  Q
    |||||||||||||||||||||| |||| |||||||||||  |||||||    
T  21722731 aataagttttataggaagatgtaaaaataattttcattgactattgat 21722778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 434
Target Start/End: Complemental strand, 24940478 - 24940423
Alignment:
Q  379 ttttccttagaataagttttataggaagatgttaaaacaattttcattggttattg 434  Q
    ||||| || ||| |||||||||| |||||||| |||||||||||| ||||||||||    
T  24940478 ttttctttggaaaaagttttataagaagatgtaaaaacaattttcgttggttattg 24940423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 432
Target Start/End: Complemental strand, 32203316 - 32203273
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggttat 432  Q
    |||||||||||| ||||||| | |||||||||||||||||||||    
T  32203316 aataagttttatgggaagatataaaaacaattttcattggttat 32203273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 427
Target Start/End: Original strand, 32323298 - 32323349
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattg 427  Q
    |||||||| ||| |||||| ||||| ||||||||| ||||||||||||||||    
T  32323298 gtgttttctttaaaataagatttatgggaagatgtaaaaacaattttcattg 32323349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 447
Target Start/End: Complemental strand, 37912000 - 37911929
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaa 447  Q
    ||||| || ||| |||||||||||||| || |||| ||||||||||||||||||  ||||| ||||| ||||    
T  37912000 gtgttatctttaaaataagttttatagaaatatgtaaaaacaattttcattggtagttgattatagagaaaa 37911929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 431
Target Start/End: Complemental strand, 50768556 - 50768501
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggtta 431  Q
    ||||||||||| |||||||||| || | ||||||| |||| |||||||||||||||    
T  50768556 gtgttttccttggaataagtttcatggaaagatgtaaaaataattttcattggtta 50768501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 435
Target Start/End: Complemental strand, 53848576 - 53848517
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattga 435  Q
    ||||| |||||  ||||| ||||||||||||| || ||||||||||| ||||||||||||    
T  53848576 gtgttatccttgaaataatttttataggaagacgtaaaaacaattttaattggttattga 53848517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 392 - 434
Target Start/End: Complemental strand, 10069797 - 10069755
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattg 434  Q
    ||||||||||| ||||||| ||||||||||||||||| |||||    
T  10069797 aagttttatagaaagatgtaaaaacaattttcattggctattg 10069755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 427
Target Start/End: Complemental strand, 32410431 - 32410393
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattg 427  Q
    |||||||||||||||||||||| |||| |||||||||||    
T  32410431 aataagttttataggaagatgtaaaaataattttcattg 32410393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 433
Target Start/End: Complemental strand, 39078272 - 39078216
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttatt 433  Q
    |||||||| || ||| ||||||||||| ||||||| ||||||||||||||||| ||||    
T  39078272 gtgttttctttggaaaaagttttatag-aagatgtaaaaacaattttcattggctatt 39078216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 382 - 434
Target Start/End: Complemental strand, 8018490 - 8018438
Alignment:
Q  382 tccttagaataagttttataggaagatgttaaaacaattttcattggttattg 434  Q
    |||||||||||||||| |||  ||||||| |||| ||||||||||| ||||||    
T  8018490 tccttagaataagtttcatataaagatgtaaaaataattttcattgattattg 8018438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 376 - 420
Target Start/End: Complemental strand, 28681770 - 28681726
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaatt 420  Q
    ||||| ||||||||||||||||||| | |||||||||||| ||||    
T  28681770 gtgttctccttagaataagttttatggaaagatgttaaaataatt 28681726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 376 - 428
Target Start/End: Complemental strand, 42915646 - 42915594
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattgg 428  Q
    |||||||| || |||||||||| || | ||||||| |||||||||||||||||    
T  42915646 gtgttttctttggaataagtttcatggaaagatgtaaaaacaattttcattgg 42915594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 9e-19; HSPs: 48)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 376 - 488
Target Start/End: Complemental strand, 5950557 - 5950445
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 475  Q
    ||||| |||||  |||||||||||||||||||||| |||||||||||||||||| |||| | || ||||||| || ||   ||||| ||| |||||| ||    
T  5950557 gtgttatccttgaaataagttttataggaagatgtaaaaacaattttcattggtcattggttattgaaaaaatgaaagagagagcaaattaaatgcactt 5950458  T
Q  476 tacatttaatttt 488  Q
    |||||||||||||    
T  5950457 tacatttaatttt 5950445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 376 - 487
Target Start/End: Complemental strand, 2126156 - 2126045
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 475  Q
    |||||||| || ||| ||||||||||||||||||| ||||||||||||||||| ||||| | || ||||||| || || | ||| | |||||||| ||||    
T  2126156 gtgttttctttggaaaaagttttataggaagatgtaaaaacaattttcattggctattggttatggaaaaaatgaaagaaagagaaaattgaatgtaatt 2126057  T
Q  476 tacatttaattt 487  Q
    | ||||||||||    
T  2126056 tgcatttaattt 2126045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 376 - 433
Target Start/End: Complemental strand, 43765412 - 43765355
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttatt 433  Q
    |||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||    
T  43765412 gtgttttctttagaataagttttataggaagatgtaaaaacatttttcattggttatt 43765355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 389 - 488
Target Start/End: Complemental strand, 7397811 - 7397712
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 488  Q
    ||||| |||||||||||||||| ||||||||||||||||||  ||||| ||||| |||| || |  | ||||| |||||||||| ||| |||||||||||    
T  7397811 aataaattttataggaagatgtaaaaacaattttcattggtatttgattatagagaaaatgaaaaaaagagcaaattgaatgcactttgcatttaatttt 7397712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 376 - 435
Target Start/End: Original strand, 8889740 - 8889799
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattga 435  Q
    ||||| |||||  |||||||||||||||||||||| ||||||||||||||||||||||||    
T  8889740 gtgttatccttgaaataagttttataggaagatgtaaaaacaattttcattggttattga 8889799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 389 - 488
Target Start/End: Complemental strand, 15912303 - 15912204
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 488  Q
    |||||||||||||||||||||| |||||||||||||||| || ||||| | ||| |||| || | |  ||||| |||||||||| ||| |||||||||||    
T  15912303 aataagttttataggaagatgtaaaaacaattttcattgattgttgattacagagaaaatgaaaaggagagcaaattgaatgcagtttgcatttaatttt 15912204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 392 - 495
Target Start/End: Original strand, 39555645 - 39555748
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 491  Q
    ||||||||||| ||||||| ||||||||||||||||| ||||| | || ||||||| || ||   ||| |||||||||| ||||| |||||||||||| |    
T  39555645 aagttttatagaaagatgtaaaaacaattttcattggctattggttatggaaaaaatgaaagagagagaacattgaatgtaatttgcatttaattttatg 39555744  T
Q  492 agaa 495  Q
    ||||    
T  39555745 agaa 39555748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 382 - 487
Target Start/End: Original strand, 52841494 - 52841599
Alignment:
Q  382 tccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatt 481  Q
    |||||| ||||||||| |||| ||||||||||||||||||||||||||||||  | ||||  |||| || |||| ||||| | ||| |||||||| || |    
T  52841494 tccttaaaataagtttcatagaaagatgttaaaacaattttcattggttattagttatagggaaaatgaaaggaagagcaaaatgattgcaatttgcact 52841593  T
Q  482 taattt 487  Q
    ||||||    
T  52841594 taattt 52841599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 376 - 488
Target Start/End: Complemental strand, 37538927 - 37538815
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 475  Q
    ||||| |||||  |||||||||||||||||||||| || |||||||||||||||| ||| | || || |||| || ||  |||||| |||||||||| ||    
T  37538927 gtgttatccttgaaataagttttataggaagatgtaaagacaattttcattggttgttggttatcgagaaaatgaaagagggagcaaattgaatgcactt 37538828  T
Q  476 tacatttaatttt 488  Q
    | || ||||||||    
T  37538827 tgcagttaatttt 37538815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 377 - 436
Target Start/End: Original strand, 3861739 - 3861798
Alignment:
Q  377 tgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgat 436  Q
    ||||||| |||||||||||||||| | ||||||| ||||||||||||||||| |||||||    
T  3861739 tgttttctttagaataagttttattgaaagatgtaaaaacaattttcattggctattgat 3861798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 495
Target Start/End: Complemental strand, 6785574 - 6785455
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 475  Q
    |||||||| || ||| |||||||||| |||||||| ||||||||||||||||| ||||| | || ||||||| || ||   ||| | |||||||| | ||    
T  6785574 gtgttttcttttgaaaaagttttatatgaagatgtaaaaacaattttcattggctattggttatggaaaaaatgaaagagagagaaaattgaatgtagtt 6785475  T
Q  476 tacatttaattttacgagaa 495  Q
    | |||||||||||| |||||    
T  6785474 tgcatttaattttatgagaa 6785455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 392 - 495
Target Start/End: Original strand, 15959699 - 15959802
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 491  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| | || |||||||  | ||   ||| | |||||||| ||||| |||||||||||| |    
T  15959699 aagttttataggaagatgtaaaaacaattttcattggctattggttatggaaaaaattaaagagagagaaaattgaatgtaatttgcatttaattttatg 15959798  T
Q  492 agaa 495  Q
    ||||    
T  15959799 agaa 15959802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 392 - 495
Target Start/End: Original strand, 32624064 - 32624167
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 491  Q
    ||||||||||||||||||| |||||||||||||||||  |||| | || ||||||| || ||   ||| | |||||||| ||||| |||||||||||| |    
T  32624064 aagttttataggaagatgtaaaaacaattttcattggccattggttatggaaaaaatgaaagagagagaaaattgaatgtaatttgcatttaattttatg 32624163  T
Q  492 agaa 495  Q
    ||||    
T  32624164 agaa 32624167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 392 - 495
Target Start/End: Complemental strand, 40718780 - 40718677
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 491  Q
    |||||||||| |||| |||  |||||||||||||||| ||||| | |||||||||| || || | ||| | |||||||| ||||| |||||||||||| |    
T  40718780 aagttttatatgaagttgtagaaacaattttcattggctattggtaatagaaaaaatgaaagaaagagaaaattgaatgtaatttgcatttaattttatg 40718681  T
Q  492 agaa 495  Q
    ||||    
T  40718680 agaa 40718677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 389 - 488
Target Start/End: Original strand, 44510275 - 44510374
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 488  Q
    ||||| |||||||||||| ||| |||||||||||||||| | |||||| ||||| |||| || | |  ||||| |||||||||| ||| |||||||||||    
T  44510275 aataaattttataggaagttgtaaaaacaattttcattgataattgattatagagaaaatgaaaaggagagcaaattgaatgcactttgcatttaatttt 44510374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 395 - 489
Target Start/End: Original strand, 28120817 - 28120911
Alignment:
Q  395 ttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttta 489  Q
    |||||| ||||||||| ||||||||||||||||| ||||||| || ||||||| || ||   ||| | |||||||| ||||| ||||||||||||    
T  28120817 ttttatgggaagatgtaaaaacaattttcattggctattgattatggaaaaaatgaaagagagagaaaattgaatgtaatttgcatttaatttta 28120911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 389 - 430
Target Start/End: Complemental strand, 16688241 - 16688200
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggtt 430  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  16688241 aataagttttataggaagatgtaaaaacaattttcattggtt 16688200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 389 - 434
Target Start/End: Original strand, 32318616 - 32318661
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggttattg 434  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||    
T  32318616 aataagttttattggaagatgtaaaaacaattttcattggttattg 32318661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 376 - 488
Target Start/End: Original strand, 5858414 - 5858526
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 475  Q
    ||||| |||||  |||||||||||||||||||| | ||||||||||||||||| ||||| | || || |||| || |    ||||| |||||||||| ||    
T  5858414 gtgttatccttgaaataagttttataggaagatataaaaacaattttcattggctattggttattgagaaaatgaaacagagagcaaattgaatgcactt 5858513  T
Q  476 tacatttaatttt 488  Q
    | |||||||||||    
T  5858514 tgcatttaatttt 5858526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 376 - 436
Target Start/End: Original strand, 10558799 - 10558859
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgat 436  Q
    |||||||| || |||||| |||||| ||||||||| ||||||||||||||||| |||||||    
T  10558799 gtgttttctttggaataatttttatgggaagatgtaaaaacaattttcattggctattgat 10558859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 392 - 488
Target Start/End: Complemental strand, 13351782 - 13351686
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 488  Q
    ||||||||||||||||||| ||||||||||||||||||  ||||| ||||| |||| || | |  || || |||||||||| ||| |||||| ||||    
T  13351782 aagttttataggaagatgtaaaaacaattttcattggtagttgattatagagaaaatgaaaaggagaacaaattgaatgcactttgcatttagtttt 13351686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 392 - 495
Target Start/End: Original strand, 43667362 - 43667463
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 491  Q
    |||||||||||||||| || |||||||||||||||||  |||| | || ||||||| || ||   ||| | |||||||| |||||||||||||||||| |    
T  43667362 aagttttataggaagacgtaaaaacaattttcattggccattggttatggaaaaaatgaaag--agagaaaattgaatgtaatttacatttaattttatg 43667459  T
Q  492 agaa 495  Q
    ||||    
T  43667460 agaa 43667463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 376 - 447
Target Start/End: Complemental strand, 11241145 - 11241074
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaa 447  Q
    |||||||| || ||| ||||||||||||||||||| ||| ||||||||||||| ||||| | || |||||||    
T  11241145 gtgttttctttggaaaaagttttataggaagatgtaaaaccaattttcattggctattggttatggaaaaaa 11241074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 392 - 495
Target Start/End: Original strand, 12449026 - 12449129
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 491  Q
    ||||||||||||||||||| |||||||||||||||||  |||| | || |||||||  | ||   ||| | |||||||| ||||| |||||||||||| |    
T  12449026 aagttttataggaagatgtaaaaacaattttcattggccattggttatggaaaaaatcaaagagagagaaaattgaatgtaatttgcatttaattttatg 12449125  T
Q  492 agaa 495  Q
    ||||    
T  12449126 agaa 12449129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 376 - 495
Target Start/End: Complemental strand, 24190587 - 24190469
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 475  Q
    |||||||| || ||| |||||||||| | |||||| ||||||||||||||||| ||||| | || ||||||| || || | ||| | ||| |||| ||||    
T  24190587 gtgttttctttggaaaaagttttatacggagatgtaaaaacaattttcattggctattggttatggaaaaaatgaaagaaagagaaaatt-aatgtaatt 24190489  T
Q  476 tacatttaattttacgagaa 495  Q
    | |||||||||||| |||||    
T  24190488 tgcatttaattttatgagaa 24190469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 376 - 447
Target Start/End: Original strand, 24728670 - 24728741
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaa 447  Q
    |||||||| || |||||||||| || ||||||||| |||||||||||||||||  |||||| || |||||||    
T  24728670 gtgttttctttcgaataagtttcatgggaagatgtaaaaacaattttcattggcaattgattatggaaaaaa 24728741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 488
Target Start/End: Original strand, 25185360 - 25185459
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 488  Q
    |||||||||||||||||||||| ||||||| ||||||||||  ||||| ||||| |||| || |    || || |||||||||| ||| |||||||||||    
T  25185360 aataagttttataggaagatgtgaaaacaactttcattggtagttgattatagagaaaatgaaaaagagaacaaattgaatgcactttgcatttaatttt 25185459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 488
Target Start/End: Original strand, 45840122 - 45840220
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 488  Q
    |||| ||||||||||||||||  ||||||||||||||||||  ||||| |||||||||| || |    ||||| |||||||||| ||| |||||||||||    
T  45840122 aatatgttttataggaagatga-aaaacaattttcattggtagttgattatagaaaaaatgaaaaagagagcaaattgaatgcactttgcatttaatttt 45840220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 392 - 495
Target Start/End: Original strand, 47600098 - 47600201
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 491  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| | ||  |||||| || ||    || | |||||||| ||||| |||||||||||| |    
T  47600098 aagttttataggaagatgtaaaaacaattttcattggctattgtttatgaaaaaaatgaaagagaaagaaaattgaatgtaatttgcatttaattttatg 47600197  T
Q  492 agaa 495  Q
    ||||    
T  47600198 agaa 47600201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 389 - 447
Target Start/End: Original strand, 30701441 - 30701499
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaa 447  Q
    |||||||||||||||||||||| |||| |||||||||||||  ||||| ||||| ||||    
T  30701441 aataagttttataggaagatgtgaaaataattttcattggtagttgattatagagaaaa 30701499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 329 - 447
Target Start/End: Complemental strand, 6787005 - 6786885
Alignment:
Q  329 cacatttattaagaacactaaaacatga---tttggagtatagnnnnnnngtgttttccttagaataagttttataggaagatgttaaaacaattttcat 425  Q
    |||| |||||||||| ||||||||||||   ||||||||||||       |||||||| || ||| |||||||||| |||||||| || |||||||||||    
T  6787005 cacacttattaagaaaactaaaacatgagaatttggagtatagtttttt-gtgttttctttggaaaaagttttatatgaagatgtaaacacaattttcat 6786907  T
Q  426 tggttattgatcatagaaaaaa 447  Q
    ||| ||||| | || |||||||    
T  6786906 tggctattggttatggaaaaaa 6786885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 394 - 447
Target Start/End: Original strand, 28016807 - 28016860
Alignment:
Q  394 gttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaa 447  Q
    ||||||||||||||||| ||||||||||||||||| ||||| | ||| ||||||    
T  28016807 gttttataggaagatgtaaaaacaattttcattggctattggttataaaaaaaa 28016860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 436
Target Start/End: Original strand, 7468006 - 7468066
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgat 436  Q
    |||||||| || ||| |||||||| |||||||||| || |||||||||||||| |||||||    
T  7468006 gtgttttctttggaaaaagttttaaaggaagatgtaaatacaattttcattggctattgat 7468066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 495
Target Start/End: Complemental strand, 35691495 - 35691391
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaag-gagaggaggagcacattgaatgcaatttacatttaattttac 490  Q
    |||||||||||| |||||| ||||||||||| ||||| ||||| | || |||||||  || || | ||| | |||||||| ||||| ||||||||||||     
T  35691495 aagttttatagggagatgtaaaaacaatttttattggctattggttatggaaaaaaatgaaagaaagagaaaattgaatgtaatttgcatttaattttat 35691396  T
Q  491 gagaa 495  Q
    |||||    
T  35691395 gagaa 35691391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 428
Target Start/End: Original strand, 44148879 - 44148931
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattgg 428  Q
    |||||||| || |||||||||| || ||||||||| |||||||||||||||||    
T  44148879 gtgttttctttggaataagtttcatgggaagatgtaaaaacaattttcattgg 44148931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 436
Target Start/End: Complemental strand, 52985051 - 52984991
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgat 436  Q
    |||||||| || |||||||||| |  ||||||||| ||||||||||||||||| |||||||    
T  52985051 gtgttttctttggaataagtttcacgggaagatgtaaaaacaattttcattggctattgat 52984991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 434
Target Start/End: Original strand, 42965877 - 42965916
Alignment:
Q  395 ttttataggaagatgttaaaacaattttcattggttattg 434  Q
    |||||||||||||||| ||||||||||||||||| |||||    
T  42965877 ttttataggaagatgtaaaaacaattttcattggctattg 42965916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 495
Target Start/End: Original strand, 47014550 - 47014652
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 491  Q
    |||||||||||||| |||| ||||||||||||||||  ||||| | || ||||||| || ||   ||| | ||||||||  ||||||||||||||||| |    
T  47014550 aagttttataggaaaatgtaaaaacaattttcattgactattggttatggaaaaaatgaaagagagagaaaattgaatg-tatttacatttaattttatg 47014648  T
Q  492 agaa 495  Q
    ||||    
T  47014649 agaa 47014652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 376 - 434
Target Start/End: Complemental strand, 30221843 - 30221785
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattg 434  Q
    |||||||| ||| |||||||||||| ||||||||| |||||| |||| ||||| |||||    
T  30221843 gtgttttctttaaaataagttttatgggaagatgtaaaaacattttttattggatattg 30221785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 447
Target Start/End: Complemental strand, 50176627 - 50176569
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaa 447  Q
    ||||| |||||||||||||||| ||||||||||| ||||||  ||||| ||||| ||||    
T  50176627 aataaattttataggaagatgtaaaaacaatttttattggtagttgattatagagaaaa 50176569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 433
Target Start/End: Original strand, 2246057 - 2246114
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttatt 433  Q
    |||||||| ||  ||||||||||||||||| |||| |||| |||||||||||| ||||    
T  2246057 gtgttttctttgaaataagttttataggaatatgtaaaaagaattttcattggctatt 2246114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 434
Target Start/End: Original strand, 35366259 - 35366304
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggttattg 434  Q
    ||||| |||||||| ||||||| ||||||||||| |||||||||||    
T  35366259 aataaattttatagaaagatgtaaaaacaattttaattggttattg 35366304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 388 - 428
Target Start/End: Complemental strand, 3076401 - 3076361
Alignment:
Q  388 gaataagttttataggaagatgttaaaacaattttcattgg 428  Q
    ||||||||||||| ||||||||| |||| ||||||||||||    
T  3076401 gaataagttttatgggaagatgtaaaaataattttcattgg 3076361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 376 - 428
Target Start/End: Complemental strand, 25391799 - 25391748
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattgg 428  Q
    |||||||| ||||| ||||||||||| ||| |||| |||||||||||||||||    
T  25391799 gtgttttctttaga-taagttttatatgaaaatgtaaaaacaattttcattgg 25391748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 392 - 428
Target Start/End: Original strand, 32983230 - 32983266
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattgg 428  Q
    |||||||||| |||||||| |||||||||||||||||    
T  32983230 aagttttataagaagatgtaaaaacaattttcattgg 32983266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 392 - 428
Target Start/End: Original strand, 46818561 - 46818597
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattgg 428  Q
    ||||||||||||||||| | |||||||||||||||||    
T  46818561 aagttttataggaagatataaaaacaattttcattgg 46818597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 388 - 436
Target Start/End: Original strand, 47302961 - 47303008
Alignment:
Q  388 gaataagttttataggaagatgttaaaacaattttcattggttattgat 436  Q
    |||||||||| ||||||||||| ||||| |||||||||||| |||||||    
T  47302961 gaataagtttcataggaagatg-taaaataattttcattggctattgat 47303008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 389 - 433
Target Start/End: Original strand, 51338953 - 51338997
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggttatt 433  Q
    ||||||||| |||| ||||||| ||| ||||||||||||||||||    
T  51338953 aataagtttcatagaaagatgtaaaatcaattttcattggttatt 51338997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 392 - 495
Target Start/End: Complemental strand, 6686486 - 6686383
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 491  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| | || ||||||| || || | ||| | |||||||| ||||| |||||||||||| |    
T  6686486 aagttttataggaagatgtaaaaacaattttcattggctattggttatggaaaaaatgaaagaaagagaaaattgaatgtaatttgcatttaattttatg 6686387  T
Q  492 agaa 495  Q
    ||||    
T  6686386 agaa 6686383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 392 - 495
Target Start/End: Original strand, 11261943 - 11262046
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 491  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| | || ||||||| || || | ||| | |||||||| ||||| |||||||||||| |    
T  11261943 aagttttataggaagatgtaaaaacaattttcattggctattggttatggaaaaaatgaaagaaagagaaaattgaatgtaatttgcatttaattttatg 11262042  T
Q  492 agaa 495  Q
    ||||    
T  11262043 agaa 11262046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 376 - 495
Target Start/End: Original strand, 43590005 - 43590124
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 475  Q
    |||||||| || ||| |||||||||||| |||||| ||||||||||||||||| ||||| | || ||||||| || || | ||| | |||||||| ||||    
T  43590005 gtgttttcttttgaaaaagttttatagggagatgtaaaaacaattttcattggctattggttatggaaaaaatgaaagaaagagaaaattgaatgtaatt 43590104  T
Q  476 tacatttaattttacgagaa 495  Q
    | |||||||||||| |||||    
T  43590105 tgcatttaattttatgagaa 43590124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 390 - 488
Target Start/End: Original strand, 10153985 - 10154083
Alignment:
Q  390 ataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 488  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| |||| || |||| || ||    |||| |||||||||| ||| |||||||||||    
T  10153985 ataagttttataggaagatgtaaaaacaattttcattggttattggtcattgagaaaatgaaagagatagcaaattgaatgcactttgcatttaatttt 10154083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 389 - 488
Target Start/End: Original strand, 12912350 - 12912449
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 488  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |  | ||||||| || ||   ||||| ||| |||||| ||| |||||||||||    
T  12912350 aataagttttataggaagatgtaaaaacaattttcattggttattggttgttgaaaaaatgaaagagagagcaaattaaatgcactttgcatttaatttt 12912449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 376 - 495
Target Start/End: Original strand, 38130159 - 38130278
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 475  Q
    |||||||| |||||| |||||||||||||| |||| |||| |||||||||||| ||||| | || ||||||| || ||   ||| | |||||||| |||     
T  38130159 gtgttttctttagaaaaagttttataggaatatgtaaaaataattttcattggctattggttatggaaaaaatgaaagagagagaaaattgaatgtaatc 38130258  T
Q  476 tacatttaattttacgagaa 495  Q
    |||||||||||||| |||||    
T  38130259 tacatttaattttatgagaa 38130278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 392 - 495
Target Start/End: Complemental strand, 38280949 - 38280846
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 491  Q
    |||||||||||||| |||| ||||||||||||||||||||||||| || ||||||| || ||   ||| | |||||||  ||||| |||||||||||| |    
T  38280949 aagttttataggaaaatgtaaaaacaattttcattggttattgattatggaaaaaatgaaagagagagaaaattgaatataatttgcatttaattttatg 38280850  T
Q  492 agaa 495  Q
    ||||    
T  38280849 agaa 38280846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 389 - 488
Target Start/End: Complemental strand, 8959745 - 8959646
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggttattgatcataga-aaaaaggagaggaggagcacattgaatgcaatttacatttaattt 487  Q
    |||||||||||||||||||||| |||||||||||||||| |  ||||| ||||| |||| ||| | || ||||| |||||| ||| ||||||||||||||    
T  8959745 aataagttttataggaagatgtaaaaacaattttcattgatagttgattatagagaaaatggaaaaga-gagcaaattgaacgcactttacatttaattt 8959647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 376 - 487
Target Start/End: Complemental strand, 20644132 - 20644021
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagag-gaggagcacattgaatgcaat 474  Q
    |||||||| || ||| ||||||||||||||||||| ||||||||||||||||| ||||| | || ||||||| || || |||| | | |||||||| |||    
T  20644132 gtgttttctttggaaaaagttttataggaagatgtaaaaacaattttcattggctattggttatggaaaaaatgaaagagagg-gaaaattgaatgtaat 20644034  T
Q  475 ttacatttaattt 487  Q
    || ||||||||||    
T  20644033 ttgcatttaattt 20644021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 392 - 488
Target Start/End: Original strand, 37522648 - 37522744
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 488  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| | || ||||||| || ||   ||| | |||||||| ||||| |||||||||||    
T  37522648 aagttttataggaagatgtaaaaacaattttcattggctattgtttatggaaaaaatgaaagacagagaaaattgaatgtaatttgcatttaatttt 37522744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 376 - 495
Target Start/End: Complemental strand, 42273765 - 42273648
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 475  Q
    |||||||| || ||| |||||||||| |||||||| ||||||||||||||||| ||||| | || || |||| || ||   ||| | |||||||||||||    
T  42273765 gtgttttctttggaaaaagttttataagaagatgtaaaaacaattttcattggctattggttatggagaaaatgaaag--agagaaaattgaatgcaatt 42273668  T
Q  476 tacatttaattttacgagaa 495  Q
    | |||||||||||| |||||    
T  42273667 tgcatttaattttatgagaa 42273648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 392 - 495
Target Start/End: Original strand, 37562821 - 37562924
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 491  Q
    ||||||||||||||||||| ||||||||||||||| | ||||| | || ||||||| || ||   ||| | |||||||| ||||| |||||||||||| |    
T  37562821 aagttttataggaagatgtaaaaacaattttcattagctattgtttatggaaaaaatgaaagacagagaaaattgaatgtaatttgcatttaattttatg 37562920  T
Q  492 agaa 495  Q
    ||||    
T  37562921 agaa 37562924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 389 - 430
Target Start/End: Original strand, 5369087 - 5369128
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggtt 430  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  5369087 aataagttttataggaagatgtaaaaacaattttcattggtt 5369128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 397 - 488
Target Start/End: Original strand, 5659584 - 5659676
Alignment:
Q  397 ttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggag-gagcacattgaatgcaatttacatttaatttt 488  Q
    |||||||||||||| ||||||||||| ||||||  ||||| |||||||||| || |  ||  |||| |||||||||| |||||||||||||||    
T  5659584 ttataggaagatgtaaaaacaatttttattggtagttgattatagaaaaaatgaaaaaagaaagcaaattgaatgcactttacatttaatttt 5659676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 488
Target Start/End: Original strand, 3463871 - 3463970
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 488  Q
    |||||||||||||||||||| | ||||||||||| ||||||  ||||| ||||| |||| || |    ||||| |||||||||| ||| |||||||||||    
T  3463871 aataagttttataggaagatataaaaacaatttttattggtagttgattatagagaaaatgaaaaagagagcaaattgaatgcactttgcatttaatttt 3463970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 446
Target Start/End: Complemental strand, 34425432 - 34425378
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaa 446  Q
    |||||||||||||| |||| ||||||||||||||||| ||||||| || ||||||    
T  34425432 aagttttataggaatatgtaaaaacaattttcattggctattgattatggaaaaa 34425378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 428
Target Start/End: Complemental strand, 19413259 - 19413207
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattgg 428  Q
    |||||||| ||  |||||||||||| ||||||||| |||||||||||||||||    
T  19413259 gtgttttctttgaaataagttttatgggaagatgtaaaaacaattttcattgg 19413207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 429
Target Start/End: Original strand, 29307243 - 29307283
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggt 429  Q
    |||||||||||||||||||||| |||| |||||||||||||    
T  29307243 aataagttttataggaagatgtaaaaataattttcattggt 29307283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 428
Target Start/End: Original strand, 39505276 - 39505328
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattgg 428  Q
    |||||||| || ||||||||||||| | ||||||| |||||||||||||||||    
T  39505276 gtgttttctttggaataagttttatggtaagatgtaaaaacaattttcattgg 39505328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 447
Target Start/End: Original strand, 1144534 - 1144605
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaa 447  Q
    ||||| || ||| ||||| ||||||||||| |||| ||||||||||||||||||  ||||| ||||| ||||    
T  1144534 gtgttatctttaaaataaattttataggaatatgtaaaaacaattttcattggtagttgattatagagaaaa 1144605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 488
Target Start/End: Original strand, 5736296 - 5736395
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 488  Q
    ||||| |||||||||||| ||| ||||||||||||||| ||  ||||| | ||| |||| || |||  ||||| |||||| ||| ||| |||||||||||    
T  5736296 aataaattttataggaagttgtaaaaacaattttcatttgtcgttgattacagagaaaatgaaagggagagcaaattgaacgcattttgcatttaatttt 5736395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 427
Target Start/End: Original strand, 5984151 - 5984202
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattg 427  Q
    |||||||| || ||||||||||||||| || |||| ||||||||||||||||    
T  5984151 gtgttttctttggaataagttttatagaaatatgtaaaaacaattttcattg 5984202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 428
Target Start/End: Complemental strand, 8506536 - 8506497
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattgg 428  Q
    |||||||||||||| ||||||| |||||||||||||||||    
T  8506536 aataagttttatagaaagatgtaaaaacaattttcattgg 8506497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 427
Target Start/End: Complemental strand, 25840982 - 25840931
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattg 427  Q
    |||||||| || |||||||||| || ||||||||| ||||||||||||||||    
T  25840982 gtgttttctttggaataagtttcatgggaagatgtaaaaacaattttcattg 25840931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 376 - 489
Target Start/End: Original strand, 2002176 - 2002289
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcataga-aaaaaggagaggaggagcacattgaatgcaat 474  Q
    ||||||| |||| |||||||||||| | ||||||| ||||||||| | |||||||| |||| || || | ||  || |||| || || ||||||||||||    
T  2002176 gtgtttttcttaaaataagttttatggaaagatgtaaaaacaattcttattggttaatgattatggagagaatagaaagga-gaacaaattgaatgcaat 2002274  T
Q  475 ttacatttaatttta 489  Q
    || ||||||||||||    
T  2002275 ttgcatttaatttta 2002289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 442
Target Start/End: Original strand, 16153402 - 16153454
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggttattgatcataga 442  Q
    |||||||||||||||||||||| ||||| ||||||||||||  ||||| |||||    
T  16153402 aataagttttataggaagatgtaaaaac-attttcattggtagttgattataga 16153454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 436
Target Start/End: Complemental strand, 17351503 - 17351446
Alignment:
Q  379 ttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgat 436  Q
    ||||| || ||||||||||||| | ||||||| ||||||||||| ||||| |||||||    
T  17351503 ttttcgttggaataagttttatggaaagatgtaaaaacaattttaattggctattgat 17351446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 427
Target Start/End: Complemental strand, 32017803 - 32017770
Alignment:
Q  394 gttttataggaagatgttaaaacaattttcattg 427  Q
    ||||||||||||||||| ||||||||||||||||    
T  32017803 gttttataggaagatgtaaaaacaattttcattg 32017770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 390 - 426
Target Start/End: Original strand, 43454380 - 43454416
Alignment:
Q  390 ataagttttataggaagatgttaaaacaattttcatt 426  Q
    |||||||||||||||| |||| |||||||||||||||    
T  43454380 ataagttttataggaatatgtaaaaacaattttcatt 43454416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0442 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0442
Description:

Target: scaffold0442; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 376 - 495
Target Start/End: Complemental strand, 10163 - 10044
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 475  Q
    |||||||| |||||| ||||||||||||||||||| ||||||||||||||||  ||||| | || ||||||| || ||   ||| | |||||||| ||||    
T  10163 gtgttttctttagaaaaagttttataggaagatgtaaaaacaattttcattgactattggttatggaaaaaatgaaagagagagaaaattgaatgtaatt 10064  T
Q  476 tacatttaattttacgagaa 495  Q
    | ||||||||| || |||||    
T  10063 tgcatttaattgtatgagaa 10044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0774 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0774
Description:

Target: scaffold0774; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 495
Target Start/End: Original strand, 3471 - 3590
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 475  Q
    |||||||| || ||| ||||||||||||||||||| |||| |||||||||||| ||||| | || ||||||| || ||   ||| | |||||||| ||||    
T  3471 gtgttttcttttgaaaaagttttataggaagatgtaaaaataattttcattggctattggttatggaaaaaatgaaagagagagaaaattgaatgtaatt 3570  T
Q  476 tacatttaattttacgagaa 495  Q
    | ||||||||| || |||||    
T  3571 tgcatttaattgtatgagaa 3590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 392 - 495
Target Start/End: Original strand, 632 - 735
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 491  Q
    |||||||||||| |||||| ||||||||||||||||| ||||| | || ||||||| || || | ||  | |||||||| ||||| |||||||||||| |    
T  632 aagttttatagggagatgtaaaaacaattttcattggctattggttatggaaaaaatgaaagaaagataaaattgaatgtaatttgcatttaattttatg 731  T
Q  492 agaa 495  Q
    ||||    
T  732 agaa 735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 392 - 495
Target Start/End: Complemental strand, 78059 - 77956
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 491  Q
    ||||| ||||||||||||| |||||||||||||||||  |||| | || ||||||| || || | | | | |||||||| |||||||||||||||||| |    
T  78059 aagttgtataggaagatgtaaaaacaattttcattggccattggttatggaaaaaatgaaagaaagtgaaaattgaatgtaatttacatttaattttatg 77960  T
Q  492 agaa 495  Q
    ||||    
T  77959 agaa 77956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 488
Target Start/End: Original strand, 5931 - 6030
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 488  Q
    |||||||||||||||||||||| |||||||||||| ||| |  ||||| |||||||||| || |    ||| | |||||||||| ||| |||||||||||    
T  5931 aataagttttataggaagatgtaaaaacaattttccttgatagttgattatagaaaaaatgaaaaagagagtaaattgaatgcactttgcatttaatttt 6030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 376 - 447
Target Start/End: Complemental strand, 40297 - 40226
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaa 447  Q
    |||||||| || |||||| |||||||| ||| ||| ||||||||||||||||| ||||| | ||||||||||    
T  40297 gtgttttctttggaataaattttatagaaagttgtaaaaacaattttcattggctattggttatagaaaaaa 40226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1157 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold1157
Description:

Target: scaffold1157; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 376 - 433
Target Start/End: Original strand, 1710 - 1767
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttatt 433  Q
    ||||||||||| |||| ||||| || ||||||||| |||||| |||||||||||||||    
T  1710 gtgttttccttggaattagtttcatgggaagatgtaaaaacatttttcattggttatt 1767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 495
Target Start/End: Complemental strand, 154963 - 154860
Alignment:
Q  392 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 491  Q
    ||||||||||| ||||||| |||||||||| |||||| ||||| | || ||||||| || ||   ||| | ||| |||| ||||| |||||||||||| |    
T  154963 aagttttatagaaagatgtaaaaacaatttacattggctattggttatggaaaaaatgaaagatagagaaaatttaatgtaatttgcatttaattttatg 154864  T
Q  492 agaa 495  Q
    ||||    
T  154863 agaa 154860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 447
Target Start/End: Complemental strand, 3273 - 3215
Alignment:
Q  389 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaa 447  Q
    |||||||||||||||||||| | |||||||||| |||||||  ||||| ||||| ||||    
T  3273 aataagttttataggaagatctaaaaacaatttccattggtagttgattatagagaaaa 3215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 433
Target Start/End: Original strand, 160962 - 161019
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttatt 433  Q
    ||||| |||||  ||||||||| |||| ||| ||| ||||||||||||||||||||||    
T  160962 gtgttatccttgaaataagtttgatagaaagttgtaaaaacaattttcattggttatt 161019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 376 - 428
Target Start/End: Complemental strand, 157912 - 157860
Alignment:
Q  376 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattgg 428  Q
    |||||||| || |||||||||| || || |||||| |||||||||||||||||    
T  157912 gtgttttctttggaataagtttcatggggagatgtaaaaacaattttcattgg 157860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University