View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21087_low_13 (Length: 469)
Name: NF21087_low_13
Description: NF21087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21087_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 10 - 453
Target Start/End: Original strand, 5487464 - 5487907
Alignment:
| Q |
10 |
atgaatgaaagagaggtctatttgcaattatatgatgcaatggaagctcttgttcatatatgtagagatggttgtcgaactattggcccgcatgataaag |
109 |
Q |
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| T |
5487464 |
atgaatgaaagagaggtctatttgcaattatatgatgcaatggaagctcttgttcatatatgtagagatggttgtcgaactattggcccgcatgataaag |
5487563 |
T |
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| Q |
110 |
acttcaaagcaaaccagccgtgtaggtatacatcctgcaaaggtctagaattgcttgttcgtcattttgctggttgcaaattgagagtcccggggggttg |
209 |
Q |
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| T |
5487564 |
acttcaaagcaaaccagccgtgtaggtatacatcctgcaaagggctagaattgcttgttcgtcattttgctggttgcaaattgagagtcccggggggttg |
5487663 |
T |
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| Q |
210 |
tggtcattgcaaaaggatgtggcaactgttggagctgcattctcgactgtgtgctgatccggatttctgtagagttcctttgtgcaggtaacaatattac |
309 |
Q |
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| T |
5487664 |
tggtcattgcaaaaggatgtggcaactgttggagctgcattctcgactgtgtgctgatccggatttctgtagagttcctttgtgcaggtaacaatattac |
5487763 |
T |
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| Q |
310 |
gtgttttctaactatggttgtacttaattcagctcaatcattcaggtgaattgtaacaaatcttttcatttcaggaactttaagcagagaatatcaaaac |
409 |
Q |
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| T |
5487764 |
gtgttttctaactatggttgtacttaattcagctcaatcattcaggtgaattgtaacaaatcttttcatttcaggaactttaagcagagaatatcaaaac |
5487863 |
T |
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| Q |
410 |
aaagcaagaaagacgaaattagatggacaattttggttgaaaag |
453 |
Q |
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| T |
5487864 |
aaagcaagaaagacgaaattagatggacaattttggttgaaaag |
5487907 |
T |
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