View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21087_low_15 (Length: 466)
Name: NF21087_low_15
Description: NF21087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21087_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 49 - 427
Target Start/End: Complemental strand, 29252333 - 29251931
Alignment:
| Q |
49 |
aagttgcttttctttttgttaagagtcaaacatttccagatcaactttctcaagattgtgagcaaggtctccgattttcaccaaattaaaaaagatgaa- |
147 |
Q |
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| T |
29252333 |
aagttacttttctttttgttaagagtcaaacatttccagatcaactttctcaagattgtgaccaaggtctccgattttcaccaaattaaaaaagatgaaa |
29252234 |
T |
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| Q |
148 |
-------------gaattttgtggatatgtatgcagatggcttaattaagccatgcatgaaagagacatatacatgataatgaaacctaaaattatctgc |
234 |
Q |
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| T |
29252233 |
aaaaacagatgaagaattttgtggatatgtatgcagatggcttaattaagccatgcatgaaagagacatatacatgataatgaaacctaaaattatctgc |
29252134 |
T |
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| Q |
235 |
tggtaatatgttggttgagtgtttctcatcagcattaaactaaacatataaaacaagctaacatttcctcgaccaaagacaaacgtcattgcaattacct |
334 |
Q |
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| T |
29252133 |
tggtaatatgttggttgagtctttctcatcagcattaaactaaacatataaaacaagctaacatttcctcgaccaaagacaaacgtcattgcaattacct |
29252034 |
T |
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| Q |
335 |
taagattgttgaacctactgaactgtataatataatatttcagcatggatcgtcaccctcg----------tgactagaaaagggtggctactagtgatg |
424 |
Q |
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| T |
29252033 |
taagattgttgaacctactgaactgtataatataatatttcagcatggatcgtcaccctcgtcatatggaatgactagaaaagggtggctactagtgatg |
29251934 |
T |
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| Q |
425 |
caa |
427 |
Q |
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| T |
29251933 |
caa |
29251931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 29252357 - 29252410
Alignment:
| Q |
1 |
gtaagttatattgatctatagaactatacgaaagatcaccgaaaaaggaagttgct |
56 |
Q |
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| T |
29252357 |
gtaagttatattgatcta--gaactatacgaaagatcaccgaaaaaggaagttgct |
29252410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 69 - 118
Target Start/End: Original strand, 40366638 - 40366687
Alignment:
| Q |
69 |
aagagtcaaacatttccagatcaactttctcaagattgtgagcaaggtct |
118 |
Q |
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| T |
40366638 |
aagagccaaacatttccagatcaactttctcaagattgtggccaaggtct |
40366687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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