View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21087_low_16 (Length: 466)
Name: NF21087_low_16
Description: NF21087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21087_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 8 - 427
Target Start/End: Complemental strand, 29252374 - 29251931
Alignment:
| Q |
8 |
tagatcaatataacttactacttctacaaccaaattatcgtaagttgcttttctttttgttaagagtcaaacatttccagatcaactttctcaagattgt |
107 |
Q |
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| T |
29252374 |
tagatcaatataacttactacttctacaaccaaattatcgtaagttacttttctttttgttaagagtcaaacatttccagatcaactttctcaagattgt |
29252275 |
T |
|
| Q |
108 |
gagcaaggtctccgattttcaccaaattaaaaaagatgaa--------------gaattttgtggatatgtatgcagatggcttaattaagccatgcatg |
193 |
Q |
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|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29252274 |
gaccaaggtctccgattttcaccaaattaaaaaagatgaaaaaaaacagatgaagaattttgtggatatgtatgcagatggcttaattaagccatgcatg |
29252175 |
T |
|
| Q |
194 |
aaagagacatatacatgataatgaaacctaaaattatctgctggtaatatgttggttgagtgtttctcatcagcattaaactaaacatataaaacaagct |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
29252174 |
aaagagacatatacatgataatgaaacctaaaattatctgctggtaatatgttggttgagtctttctcatcagcattaaactaaacatataaaacaagct |
29252075 |
T |
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| Q |
294 |
aacatttcctcgaccaaagacaaacgtcattgcaattaccttaagattgttgaacctactgaactgtataatataatatttcagcatggatcgtcaccct |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29252074 |
aacatttcctcgaccaaagacaaacgtcattgcaattaccttaagattgttgaacctactgaactgtataatataatatttcagcatggatcgtcaccct |
29251975 |
T |
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| Q |
394 |
cg----------tgactagaaaagggtggctactagtgatgcaa |
427 |
Q |
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| T |
29251974 |
cgtcatatggaatgactagaaaagggtggctactagtgatgcaa |
29251931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 69 - 118
Target Start/End: Original strand, 40366638 - 40366687
Alignment:
| Q |
69 |
aagagtcaaacatttccagatcaactttctcaagattgtgagcaaggtct |
118 |
Q |
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||||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
40366638 |
aagagccaaacatttccagatcaactttctcaagattgtggccaaggtct |
40366687 |
T |
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