View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21087_low_18 (Length: 438)
Name: NF21087_low_18
Description: NF21087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21087_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 5039255 - 5039351
Alignment:
| Q |
20 |
tacagttcatgaaaaagtagctgtttcttcaatattcattttgttactttcttatgaagtccacatacttagcaagactacaatagtgcaggtctat |
116 |
Q |
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| T |
5039255 |
tacagttcatgaaaaagtagctgtttcttcaatattcattttgttactttcttatgaagtccacatacttagcaagactacaatagtgcaggtctat |
5039351 |
T |
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Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 154 - 205
Target Start/End: Original strand, 5039351 - 5039402
Alignment:
| Q |
154 |
ttttgaaatttagaataaggtatgacctagatttgtttataaatcttttata |
205 |
Q |
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| T |
5039351 |
ttttgaaatttagaataaggtatgacctagatttgtttacaaatcttttata |
5039402 |
T |
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