View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21087_low_19 (Length: 433)
Name: NF21087_low_19
Description: NF21087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21087_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 67 - 302
Target Start/End: Complemental strand, 6963314 - 6963085
Alignment:
| Q |
67 |
tgagatcttagtccctacctaaataattgctagagaatgaatagttcagctctaatgataattaaaaagagacaatttgtttttccacattaatcaaaaa |
166 |
Q |
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| T |
6963314 |
tgagatcttagtccctacctaaatcattgctagagaatgaatagttaagctctaatgataattaaaaagagacaatttgtttttccacattaatcaaaaa |
6963215 |
T |
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| Q |
167 |
gttaccttaataaaattaataaataagttataatttgacccatacaacagaaatgtctctaaataatttagtcttcaataaatcaattatttcttttttg |
266 |
Q |
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| T |
6963214 |
gttaccttaataaaattaataaataagttacaatttgacccatacaacagaaaagtctctaaataatttagtcttcaataaatcaattatttctttttt- |
6963116 |
T |
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| Q |
267 |
acattgacaagaaatcgattatttctattttataac |
302 |
Q |
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| T |
6963115 |
-----gacaagaaatcgattatttctattttataac |
6963085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 301
Target Start/End: Complemental strand, 6962962 - 6962931
Alignment:
| Q |
270 |
ttgacaagaaatcgattatttctattttataa |
301 |
Q |
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| T |
6962962 |
ttgacaagaaatcgattatttctattttataa |
6962931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 6962997 - 6962965
Alignment:
| Q |
390 |
gacaagaaatcaaaactagttctattttatatt |
422 |
Q |
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| T |
6962997 |
gacaagaaatcaaaactatttctattttatatt |
6962965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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