View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21087_low_2 (Length: 801)

Name: NF21087_low_2
Description: NF21087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21087_low_2
NF21087_low_2
[»] chr6 (20 HSPs)
chr6 (279-786)||(5252665-5253172)
chr6 (19-220)||(5253420-5253621)
chr6 (19-166)||(5065672-5065819)
chr6 (19-115)||(5346005-5346101)
chr6 (36-115)||(5242752-5242831)
chr6 (430-536)||(5439644-5439750)
chr6 (433-507)||(5100164-5100238)
chr6 (728-786)||(30539125-30539183)
chr6 (518-578)||(5427325-5427385)
chr6 (506-577)||(5352008-5352079)
chr6 (56-107)||(5438998-5439049)
chr6 (128-175)||(5689259-5689306)
chr6 (43-101)||(5101062-5101120)
chr6 (19-101)||(5126852-5126934)
chr6 (441-507)||(5135438-5135504)
chr6 (43-101)||(5136163-5136221)
chr6 (499-557)||(5100409-5100467)
chr6 (136-170)||(5242876-5242910)
chr6 (57-107)||(5448596-5448646)
chr6 (128-161)||(5177645-5177678)
[»] chr2 (3 HSPs)
chr2 (19-110)||(22583510-22583601)
chr2 (745-786)||(25441603-25441644)
chr2 (748-777)||(11968964-11968993)
[»] chr8 (3 HSPs)
chr8 (745-785)||(22277431-22277471)
chr8 (748-786)||(23027661-23027699)
chr8 (745-786)||(3184059-3184100)
[»] chr4 (4 HSPs)
chr4 (41-112)||(4319544-4319615)
chr4 (745-786)||(48843173-48843214)
chr4 (745-778)||(51469393-51469426)
chr4 (745-786)||(53738364-53738405)
[»] chr3 (4 HSPs)
chr3 (729-786)||(13769447-13769504)
chr3 (748-786)||(3985637-3985675)
chr3 (748-786)||(9658210-9658248)
chr3 (745-786)||(24860216-24860257)
[»] chr1 (4 HSPs)
chr1 (728-783)||(43423192-43423247)
chr1 (728-778)||(8520399-8520449)
chr1 (745-786)||(4022281-4022322)
chr1 (745-786)||(45264570-45264611)
[»] chr7 (1 HSPs)
chr7 (745-778)||(29780366-29780399)
[»] chr5 (1 HSPs)
chr5 (745-786)||(37995790-37995831)


Alignment Details
Target: chr6 (Bit Score: 451; Significance: 0; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 279 - 786
Target Start/End: Complemental strand, 5253172 - 5252665
Alignment:
Q  279 gcggcagaccgttgtgtcttagttgaaggtctttcttttaacaacgagtagcagatttcattaaattgaaaacaaattagtacataaagttgattgaatt 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5253172 gcggcagaccgttgtgtcttagttgaaggtctttcttttaacaaccagtagcagatttcattaaattgaaaacaaattagtacataaagttgattgaatt 5253073  T
Q  379 tttctagggccattctcacccaagttctagaccctgaattactataacaattctaaccatactatgagttatagcatttaaatgtcttataacaaattgg 478  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |    
T  5253072 tttctagggccattctcacccaagttctagaccctgaattactataacaattctaaccatactatgagttatagaatttaaatgtcttataacaaattcg 5252973  T
Q  479 acagaacggtcttcgatctagtttagcaagcttctttagtcctgaatgatatgatatatgcctgccaagaagaaactctaatctgtgaattttaccacaa 578  Q
    ||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5252972 acagaaacgtcttcgatctagtttagaaagcttctttagtcctgaatgatatgatatatgcctgccaagaagaaactctaatctgtgaattttaccacaa 5252873  T
Q  579 gctgaagctcattttatttgctaaaacaatctgcatcaacatctatgggggctccaagacatctatggtgattgagtgatctgacttcttacttttcact 678  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||    
T  5252872 gctgaagctcattttatttgctaaaacaatctgcatcaacatctatggggcctccaagacatctatggtgattgagtggtctgacttcttactttttact 5252773  T
Q  679 tctccctcactactnnnnnnntccatgttctcagtagtccattttcggtctgtttgaagttcagcttttattgcagtccgcccctagtcgcctaaattgc 778  Q
    ||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5252772 tctccctcactactaaaaaaatccatgttctcagtagtccattttcggtctgtttgaagttcagcttttattgcagtccgcccctagtcgcctaaattgc 5252673  T
Q  779 agcctttg 786  Q
    ||||||||    
T  5252672 agcctttg 5252665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 5253621 - 5253420
Alignment:
Q  19 gaagagtagacaatgcttatctttattgtcttcaacatacgcccttccaattgagggactttaaaagatacagaagaaccttcacaattgaaagttacag 118  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5253621 gaagattagacaatgcttatctttattgtcttcaacatacgcccttccaattgagggactttaaaaggtacagaagaaccttcacaattgaaagttacag 5253522  T
Q  119 aagaatcttcaccacatccattctcatccatattctgtaaaagtgaaaatagactcaatgtttatttgaaaaatatattaatgtcactcaacaataagag 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5253521 aagaatcttcaccacatccattctcatccatattctgtaaaagtgaaaatagactcaatgtttatttgaaaaatatattaatgtcactcaacaataagag 5253422  T
Q  219 at 220  Q
    ||    
T  5253421 at 5253420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 19 - 166
Target Start/End: Original strand, 5065672 - 5065819
Alignment:
Q  19 gaagagtagacaatgcttatctttattgtcttcaacatacgcccttccaattgagggactttaaaagatacagaagaaccttcacaattgaaagttacag 118  Q
    ||||| |||||||||| |||| |||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||||||| |||||| |||||||||    
T  5065672 gaagaatagacaatgcatatcattattgtcttcaacatacgccctttcatttgagggacttcaaaagttacagaagaaccttcgcaattgtaagttacag 5065771  T
Q  119 aagaatcttcaccacatccattctcatccatattctgtaaaagtgaaa 166  Q
    |||||||||| ||| | |||||| ||||||| ||||||||||||||||    
T  5065772 aagaatcttccccaaaaccattcccatccatcttctgtaaaagtgaaa 5065819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 5346101 - 5346005
Alignment:
Q  19 gaagagtagacaatgcttatctttattgtcttcaacatacgcccttccaattgagggactttaaaagatacagaagaaccttcacaattgaaagtta 115  Q
    ||||| |||||||  | |||| |||||||||||||||| |||||||||| |||||| |||| |||||  ||||||||||||||| ||||||||||||    
T  5346101 gaagaatagacaacacatatcgttattgtcttcaacattcgcccttccacttgaggaacttcaaaagtaacagaagaaccttcagaattgaaagtta 5346005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 5242752 - 5242831
Alignment:
Q  36 tatctttattgtcttcaacatacgcccttccaattgagggactttaaaagatacagaagaaccttcacaattgaaagtta 115  Q
    |||| |||||||||||||||| |||||||||| ||||||||||| |||||  ||||||||||||||| ||| ||| ||||    
T  5242752 tatcgttattgtcttcaacattcgcccttccacttgagggacttcaaaagtaacagaagaaccttcagaatcgaaggtta 5242831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 430 - 536
Target Start/End: Original strand, 5439644 - 5439750
Alignment:
Q  430 tctaaccatactatgagttatagcatttaaatgtcttataacaaattggacagaacggtcttcgatctagtttagcaagcttctttagtcctgaatgata 529  Q
    ||||||||||| || || ||||||||| |||||| || |||||| ||||||||||| |||||||| || | ||||||| ||||| ||||  |||||||||    
T  5439644 tctaaccataccatcagctatagcattgaaatgttttttaacaatttggacagaactgtcttcgaccttgcttagcaaacttctgtagttttgaatgata 5439743  T
Q  530 tgatata 536  Q
     ||||||    
T  5439744 ggatata 5439750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 433 - 507
Target Start/End: Complemental strand, 5100238 - 5100164
Alignment:
Q  433 aaccatactatgagttatagcatttaaatgtcttataacaaattggacagaacggtcttcgatctagtttagcaa 507  Q
    |||| |||||||||||||| |||| | ||||||| ||||||||||||||| || |||||| | ||||||||||||    
T  5100238 aaccgtactatgagttataacattcatatgtcttttaacaaattggacaggacagtcttcaacctagtttagcaa 5100164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 728 - 786
Target Start/End: Original strand, 30539125 - 30539183
Alignment:
Q  728 ctgtttgaagttcagcttttattgcagtccgcccctagtcgcctaaattgcagcctttg 786  Q
    ||||| ||| ||| || |||||||| |||||||||||||||||||||||||||||||||    
T  30539125 ctgttggaaattccgcctttattgcggtccgcccctagtcgcctaaattgcagcctttg 30539183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 518 - 578
Target Start/End: Original strand, 5427325 - 5427385
Alignment:
Q  518 tcctgaatgatatgatatatgcctgccaagaagaaactctaatctgtgaattttaccacaa 578  Q
    |||||||||||| |||||||| |||||||||||||||||| || | | |||||||||||||    
T  5427325 tcctgaatgataggatatatggctgccaagaagaaactctgatttatcaattttaccacaa 5427385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 506 - 577
Target Start/End: Original strand, 5352008 - 5352079
Alignment:
Q  506 aagcttctttagtcctgaatgatatgatatatgcctgccaagaagaaactctaatctgtgaattttaccaca 577  Q
    |||||||| || || |||||||||  ||||||| |||||||||||||||||| || ||| ||||||||||||    
T  5352008 aagcttctgtactcatgaatgatagcatatatgactgccaagaagaaactctgatttgtcaattttaccaca 5352079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 56 - 107
Target Start/End: Complemental strand, 5439049 - 5438998
Alignment:
Q  56 tacgcccttccaattgagggactttaaaagatacagaagaaccttcacaatt 107  Q
    |||||||||||| ||||||||||| ||||| |||||||||||||||| ||||    
T  5439049 tacgcccttccacttgagggacttgaaaagttacagaagaaccttcagaatt 5438998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 175
Target Start/End: Original strand, 5689259 - 5689306
Alignment:
Q  128 caccacatccattctcatccatattctgtaaaagtgaaaatagactca 175  Q
    ||||||| ||||||||||||||||||||||||||| |||| |||||||    
T  5689259 caccacacccattctcatccatattctgtaaaagtaaaaacagactca 5689306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 101
Target Start/End: Original strand, 5101062 - 5101120
Alignment:
Q  43 attgtcttcaacatacgcccttccaattgagggactttaaaagatacagaagaaccttc 101  Q
    |||||||||||  |||||||||||| |||||||||||  |||| |||||||||||||||    
T  5101062 attgtcttcaagttacgcccttccacttgagggacttctaaagttacagaagaaccttc 5101120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 5126852 - 5126934
Alignment:
Q  19 gaagagtagacaatgcttatctttattgtcttcaacatacgcccttccaattgagggactttaaaagatacagaagaaccttc 101  Q
    ||||| |||||||||| |||| ||| | |||||||| ||||||||| || |||||| |||| ||||| ||| |||||||||||    
T  5126852 gaagaatagacaatgcatatcattactttcttcaacgtacgccctttcacttgaggtacttcaaaagttaccgaagaaccttc 5126934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 441 - 507
Target Start/End: Complemental strand, 5135504 - 5135438
Alignment:
Q  441 tatgagttatagcatttaaatgtcttataacaaattggacagaacggtcttcgatctagtttagcaa 507  Q
    ||||||||||| |||| | ||||||| ||||||||||||||| || |||||| | ||||||||||||    
T  5135504 tatgagttataacattcatatgtcttctaacaaattggacaggacagtcttcaacctagtttagcaa 5135438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 101
Target Start/End: Original strand, 5136163 - 5136221
Alignment:
Q  43 attgtcttcaacatacgcccttccaattgagggactttaaaagatacagaagaaccttc 101  Q
    |||||||||||  |||||||||||| |||||||||||  |||| |||||||||||||||    
T  5136163 attgtcttcaagttacgcccttccacttgagggacttctaaagttacagaagaaccttc 5136221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 499 - 557
Target Start/End: Complemental strand, 5100467 - 5100409
Alignment:
Q  499 gtttagcaagcttctttagtcctgaatgatatgatatatgcctgccaagaagaaactct 557  Q
    ||||||||| ||||| ||||||| ||| ||| |||||||  ||||||||||||||||||    
T  5100467 gtttagcaaacttctgtagtcctaaataataggatatatagctgccaagaagaaactct 5100409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 136 - 170
Target Start/End: Original strand, 5242876 - 5242910
Alignment:
Q  136 ccattctcatccatattctgtaaaagtgaaaatag 170  Q
    ||||||||||||||||||||| |||||||||||||    
T  5242876 ccattctcatccatattctgttaaagtgaaaatag 5242910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 5448646 - 5448596
Alignment:
Q  57 acgcccttccaattgagggactttaaaagatacagaagaaccttcacaatt 107  Q
    |||| |||||| ||||||||||| ||||| |||||||||||||||| ||||    
T  5448646 acgctcttccacttgagggacttcaaaagttacagaagaaccttcagaatt 5448596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 5177678 - 5177645
Alignment:
Q  128 caccacatccattctcatccatattctgtaaaag 161  Q
    ||||||| ||||||||||||||||||||||||||    
T  5177678 caccacacccattctcatccatattctgtaaaag 5177645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 22583510 - 22583601
Alignment:
Q  19 gaagagtagacaatgcttatctttattgtcttcaacatacgcccttccaattgagggactttaaaagatacagaagaaccttcacaattgaa 110  Q
    ||||| ||||||||||  ||| |||||| ||||||||||||||||| || |  |||||||||||||| ||||||||||||||  ||||||||    
T  22583510 gaagaatagacaatgcagatcattattgacttcaacatacgccctttcactacagggactttaaaagttacagaagaaccttggcaattgaa 22583601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 745 - 786
Target Start/End: Original strand, 25441603 - 25441644
Alignment:
Q  745 tttattgcagtccgcccctagtcgcctaaattgcagcctttg 786  Q
    |||||||| ||||||||||||||||||||||||| |||||||    
T  25441603 tttattgcggtccgcccctagtcgcctaaattgcggcctttg 25441644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 748 - 777
Target Start/End: Original strand, 11968964 - 11968993
Alignment:
Q  748 attgcagtccgcccctagtcgcctaaattg 777  Q
    ||||||||||||||||||||||||||||||    
T  11968964 attgcagtccgcccctagtcgcctaaattg 11968993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 745 - 785
Target Start/End: Original strand, 22277431 - 22277471
Alignment:
Q  745 tttattgcagtccgcccctagtcgcctaaattgcagccttt 785  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  22277431 tttattgcggtccgcccctagtcgcctaaattgcagccttt 22277471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 748 - 786
Target Start/End: Complemental strand, 23027699 - 23027661
Alignment:
Q  748 attgcagtccgcccctagtcgcctaaattgcagcctttg 786  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  23027699 attgcagtccgcccctagtcgcctaaattgcagcatttg 23027661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 745 - 786
Target Start/End: Complemental strand, 3184100 - 3184059
Alignment:
Q  745 tttattgcagtccgcccctagtcgcctaaattgcagcctttg 786  Q
    |||||||| ||||||||||||||||||||||||| |||||||    
T  3184100 tttattgcggtccgcccctagtcgcctaaattgcggcctttg 3184059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 112
Target Start/End: Original strand, 4319544 - 4319615
Alignment:
Q  41 ttattgtcttcaacatacgcccttccaattgagggactttaaaagatacagaagaaccttcacaattgaaag 112  Q
    |||||||||||||  |||| ||||||| ||||||||||| ||||  |||||||||||||||  |||||||||    
T  4319544 ttattgtcttcaagctacgtccttccacttgagggacttcaaaaattacagaagaaccttctgaattgaaag 4319615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 745 - 786
Target Start/End: Complemental strand, 48843214 - 48843173
Alignment:
Q  745 tttattgcagtccgcccctagtcgcctaaattgcagcctttg 786  Q
    |||||||| |||| |||||||||||||||||||| |||||||    
T  48843214 tttattgcggtccacccctagtcgcctaaattgcggcctttg 48843173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 745 - 778
Target Start/End: Original strand, 51469393 - 51469426
Alignment:
Q  745 tttattgcagtccgcccctagtcgcctaaattgc 778  Q
    |||||||| |||||||||||||||||||||||||    
T  51469393 tttattgcggtccgcccctagtcgcctaaattgc 51469426  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 745 - 786
Target Start/End: Complemental strand, 53738405 - 53738364
Alignment:
Q  745 tttattgcagtccgcccctagtcgcctaaattgcagcctttg 786  Q
    |||||||| |||| |||||||||||||||||||| |||||||    
T  53738405 tttattgcggtccacccctagtcgcctaaattgcggcctttg 53738364  T

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Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 729 - 786
Target Start/End: Complemental strand, 13769504 - 13769447
Alignment:
Q  729 tgtttgaagttcagcttttattgcagtccgcccctagtcgcctaaattgcagcctttg 786  Q
    |||| ||| ||| ||||| ||||| |||||||||||||||||||||||||| ||||||    
T  13769504 tgttggaaattccgctttaattgcggtccgcccctagtcgcctaaattgcaacctttg 13769447  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 748 - 786
Target Start/End: Original strand, 3985637 - 3985675
Alignment:
Q  748 attgcagtccgcccctagtcgcctaaattgcagcctttg 786  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  3985637 attgcagtccgcccctagtcgccttaattgcggcctttg 3985675  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 748 - 786
Target Start/End: Original strand, 9658210 - 9658248
Alignment:
Q  748 attgcagtccgcccctagtcgcctaaattgcagcctttg 786  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  9658210 attgctgtcagcccctagtcgcctaaattgcagcctttg 9658248  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 745 - 786
Target Start/End: Complemental strand, 24860257 - 24860216
Alignment:
Q  745 tttattgcagtccgcccctagtcgcctaaattgcagcctttg 786  Q
    |||||||| ||||||||||||| ||||||||||| |||||||    
T  24860257 tttattgcggtccgcccctagttgcctaaattgcggcctttg 24860216  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 728 - 783
Target Start/End: Original strand, 43423192 - 43423247
Alignment:
Q  728 ctgtttgaagttcagcttttattgcagtccgcccctagtcgcctaaattgcagcct 783  Q
    ||||| ||| ||| || |||||||  ||||||||||||||||||||||||||||||    
T  43423192 ctgttggaaattccgcctttattgttgtccgcccctagtcgcctaaattgcagcct 43423247  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 728 - 778
Target Start/End: Complemental strand, 8520449 - 8520399
Alignment:
Q  728 ctgtttgaagttcagcttttattgcagtccgcccctagtcgcctaaattgc 778  Q
    ||||| ||| ||| ||||| ||||| |||||||||||||||||||||||||    
T  8520449 ctgttggaaattccgctttaattgcggtccgcccctagtcgcctaaattgc 8520399  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 745 - 786
Target Start/End: Complemental strand, 4022322 - 4022281
Alignment:
Q  745 tttattgcagtccgcccctagtcgcctaaattgcagcctttg 786  Q
    |||||||| |||||||||| |||||||||||||| |||||||    
T  4022322 tttattgcggtccgccccttgtcgcctaaattgcggcctttg 4022281  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 745 - 786
Target Start/End: Original strand, 45264570 - 45264611
Alignment:
Q  745 tttattgcagtccgcccctagtcgcctaaattgcagcctttg 786  Q
    |||||||| |||||||||| |||||||||||||| |||||||    
T  45264570 tttattgcggtccgccccttgtcgcctaaattgcggcctttg 45264611  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 745 - 778
Target Start/End: Original strand, 29780366 - 29780399
Alignment:
Q  745 tttattgcagtccgcccctagtcgcctaaattgc 778  Q
    |||||||| |||||||||||||||||||||||||    
T  29780366 tttattgcggtccgcccctagtcgcctaaattgc 29780399  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 745 - 786
Target Start/End: Complemental strand, 37995831 - 37995790
Alignment:
Q  745 tttattgcagtccgcccctagtcgcctaaattgcagcctttg 786  Q
    |||||||| ||| ||||||||||||||||||||| |||||||    
T  37995831 tttattgcggtctgcccctagtcgcctaaattgcggcctttg 37995790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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