View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21087_low_21 (Length: 431)

Name: NF21087_low_21
Description: NF21087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21087_low_21
NF21087_low_21
[»] chr7 (2 HSPs)
chr7 (195-416)||(27658500-27658721)
chr7 (1-127)||(27658306-27658432)
[»] chr5 (5 HSPs)
chr5 (195-416)||(37605344-37605564)
chr5 (1-131)||(37605628-37605758)
chr5 (195-380)||(33360553-33360739)
chr5 (195-383)||(5742798-5742984)
chr5 (2-92)||(33360837-33360928)
[»] chr6 (2 HSPs)
chr6 (195-380)||(18084829-18085015)
chr6 (2-92)||(18085113-18085204)
[»] scaffold0856 (2 HSPs)
scaffold0856 (195-380)||(800-986)
scaffold0856 (2-92)||(1084-1175)


Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 195 - 416
Target Start/End: Original strand, 27658500 - 27658721
Alignment:
Q  195 ggggtgagatgattccttcattattttcgttttccccaaatttctaattaaaaaccctaaatttttgaattgacgaaatgatgaagttgattaagattta 294  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  27658500 ggggtgagatgattccttcattattttcgttttccccaaatttcaaattaaaaaccctaaatttttgaattgacgaaatgatgaaattgattaagattta 27658599  T
Q  295 tatactgaatatgttcaatattaattttctcaacttaattgcatgattatagacttcaaaatagctaatacttaaatctaataccccataatcaattttg 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27658600 tatactgaatatgttcaatattaattttctcaacttaattgcatgattatagacttcaaaacagctaatacttaaatctaataccccataatcaattttg 27658699  T
Q  395 tgttacaatttttctcttgtat 416  Q
    ||||||||||||||||||||||    
T  27658700 tgttacaatttttctcttgtat 27658721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 27658306 - 27658432
Alignment:
Q  1 ccaggttttttcctttctctgttcttgtttttagaatttcagtggcttgtaattgttgttataccttgttgtgctaaacgttggtttgattcttagtaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27658306 ccaggttttttcctttctctgttcttgtttttagaatttcagtggcttgtaattgttgttataccttgttgtgctaaacgttggtttgattcttagtaga 27658405  T
Q  101 taagaagaagataaaaaatcctaaacc 127  Q
    ||||||||||  |||||||||||||||    
T  27658406 taagaagaaggaaaaaaatcctaaacc 27658432  T

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Target: chr5 (Bit Score: 172; Significance: 3e-92; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 195 - 416
Target Start/End: Complemental strand, 37605564 - 37605344
Alignment:
Q  195 ggggtgagatgattccttcattattttcgttttccccaaatttctaattaaaaaccctaaatttttgaattgacgaaatgatgaagttgattaagattt- 293  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||| |||     
T  37605564 ggggtgagatgattccttcattattttcgttttccccaaatttcaaattaaaaaccctaaatttttgaattgactaaatgatgaaattgattaaggtttt 37605465  T
Q  294 atatactgaatatgttcaatattaattttctcaacttaattgcatgattatagacttcaaaatagctaatacttaaatctaataccccataatcaatttt 393  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||  ||    
T  37605464 atatactgaatatattcaatattaattttctcaacttaattgcatgattatagacttcaacacagctaatacttaaatctaataccccataatcaa--tt 37605367  T
Q  394 gtgttacaatttttctcttgtat 416  Q
    |||||||||| ||||||||||||    
T  37605366 gtgttacaatgtttctcttgtat 37605344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 37605758 - 37605628
Alignment:
Q  1 ccaggttttttcctttctctgttcttgtttttagaatttcagtggcttgtaattgttgttataccttgttgtgctaaacgttggtttgattcttagtaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  37605758 ccaggttttttcctttctctgttcttgtttttagaatttcagtggcttgtaattgttgttataccttgttgtgctaaactttggtttgattcttagtaga 37605659  T
Q  101 taagaagaagataaaaaatcctaaacccaaa 131  Q
    ||||||||||| ||||| |||||||||||||    
T  37605658 taagaagaagaaaaaaattcctaaacccaaa 37605628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 195 - 380
Target Start/End: Complemental strand, 33360739 - 33360553
Alignment:
Q  195 ggggtgagatgattccttcattattttcgttttccccaaatttctaattaaaaaccctaaatttttgaattgacgaaatgatgaagttgattaagattt- 293  Q
    ||||||||||| ||||||||| ||||||||||||||| |||||  ||| | ||||||||||||||||||||||| |||| ||||| |||||| || |||     
T  33360739 ggggtgagatggttccttcatcattttcgttttcccccaattttaaatcacaaaccctaaatttttgaattgactaaataatgaaattgattcaggtttt 33360640  T
Q  294 atatactgaatatgttcaatattaattttctcaacttaattgcatgattatagacttcaaaatagctaatacttaaatctaataccc 380  Q
    ||||| |||||||| |||||||||||||||||||||||||| |||||||| ||||||  | || |||||||||||||||| ||||||    
T  33360639 atataatgaatatgctcaatattaattttctcaacttaatttcatgattacagacttagacattgctaatacttaaatctgataccc 33360553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 195 - 383
Target Start/End: Original strand, 5742798 - 5742984
Alignment:
Q  195 ggggtgagatgattccttcattattttcgttttccccaaatttctaattaaaaaccctaaatttttgaattgacgaaatgatgaagttgattaagattta 294  Q
    ||||| ||||| | ||||||| ||||||||||||||| |||||| ||| | ||||||||||||||| ||||||| |||| ||||| |||   | | |||     
T  5742798 ggggtaagatggtcccttcatcattttcgttttcccccaatttcaaatcacaaaccctaaattttttaattgactaaataatgaaattgc--aggttttt 5742895  T
Q  295 tatactgaatatgttcaatattaattttctcaacttaattgcatgattatagacttcaaaatagctaatacttaaatctaataccccat 383  Q
    |||| |||||||| |||||||||||||||||||||||||| |||||||| | ||||  | || |||||||||||||| | |||||||||    
T  5742896 tataatgaatatgctcaatattaattttctcaacttaatttcatgattacaaacttagatattgctaatacttaaatttgataccccat 5742984  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 33360928 - 33360837
Alignment:
Q  2 caggttttttcctttctctgttcttgtttttagaatttcagtggcttgtaattgttgttatacctt-gttgtgctaaacgttggtttgattc 92  Q
    |||||| ||||||||||||  ||||||||||||||||| ||| ||||||| || ||||| |||||| |||| |  |||||||||||||||||    
T  33360928 caggttctttcctttctctactcttgtttttagaattttagtagcttgtagttattgttttaccttggttgaggaaaacgttggtttgattc 33360837  T

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Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 195 - 380
Target Start/End: Complemental strand, 18085015 - 18084829
Alignment:
Q  195 ggggtgagatgattccttcattattttcgttttccccaaatttctaattaaaaaccctaaatttttgaattgacgaaatgatgaagttgattaagattt- 293  Q
    ||||||||||| ||||||||| ||||||||||||||| |||||  ||| | ||||||||||||||||||||||| |||| ||||| |||||| || |||     
T  18085015 ggggtgagatggttccttcatcattttcgttttcccccaattttaaatcacaaaccctaaatttttgaattgactaaataatgaaattgattcaggtttt 18084916  T
Q  294 atatactgaatatgttcaatattaattttctcaacttaattgcatgattatagacttcaaaatagctaatacttaaatctaataccc 380  Q
    ||||| |||||||| |||||||||||||||||||||||||| |||||||| ||||||  | || |||||||||||||||| ||||||    
T  18084915 atataatgaatatgctcaatattaattttctcaacttaatttcatgattacagacttagacattgctaatacttaaatctgataccc 18084829  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 18085204 - 18085113
Alignment:
Q  2 caggttttttcctttctctgttcttgtttttagaatttcagtggcttgtaattgttgttatacctt-gttgtgctaaacgttggtttgattc 92  Q
    |||||| ||||||||||||  ||||||||||||||||| ||| ||||||| || ||||| |||||| |||| |  |||||||||||||||||    
T  18085204 caggttctttcctttctctactcttgtttttagaattttagtagcttgtagttattgttttaccttggttgaggaaaacgttggtttgattc 18085113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0856 (Bit Score: 91; Significance: 6e-44; HSPs: 2)
Name: scaffold0856
Description:

Target: scaffold0856; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 195 - 380
Target Start/End: Complemental strand, 986 - 800
Alignment:
Q  195 ggggtgagatgattccttcattattttcgttttccccaaatttctaattaaaaaccctaaatttttgaattgacgaaatgatgaagttgattaagattt- 293  Q
    ||||||||||| ||||||||| ||||||||||||||| |||||  ||| | |||||||||||||||||||| || |||| ||||| |||||| || |||     
T  986 ggggtgagatggttccttcatcattttcgttttcccccaattttaaatcacaaaccctaaatttttgaatttactaaataatgaaattgattcaggtttt 887  T
Q  294 atatactgaatatgttcaatattaattttctcaacttaattgcatgattatagacttcaaaatagctaatacttaaatctaataccc 380  Q
    ||||| |||||||| |||||||||||||||||||||||||| |||||||| ||||||  | || |||||||||||||||| ||||||    
T  886 atataatgaatatgctcaatattaattttctcaacttaatttcatgattacagacttagacattgctaatacttaaatctgataccc 800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0856; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 1175 - 1084
Alignment:
Q  2 caggttttttcctttctctgttcttgtttttagaatttcagtggcttgtaattgttgttatacctt-gttgtgctaaacgttggtttgattc 92  Q
    |||||| ||||||||||||  ||||||||||||||||| ||| ||||||| || ||||| |||||| |||| |  |||||||||||||||||    
T  1175 caggttctttcctttctctactcttgtttttagaattttagtagcttgtagttattgttttaccttggttgaggaaaacgttggtttgattc 1084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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