View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21087_low_22 (Length: 425)
Name: NF21087_low_22
Description: NF21087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21087_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 4e-79; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 11 - 176
Target Start/End: Complemental strand, 26594890 - 26594725
Alignment:
| Q |
11 |
catcatcatgcaatggtataaaaacaattatttacaggaacgtgctaacacccaaaataaaattaagagcagtgctaagtttctagaataatttagaaga |
110 |
Q |
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| T |
26594890 |
catcaacatgcaatggtataaaaacaattatttacaggaacgtgctaacacccaaaataaaattaagagcagtgctaagtttttagaataatttacaaga |
26594791 |
T |
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| Q |
111 |
attatactgtttgttttttgaaaaataatttagaagagttgaataagctcaatcaagttatttaat |
176 |
Q |
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| T |
26594790 |
attatactgtttgttttttgaaaaataaattagaagagttgaataagctcaatcaagttatttaat |
26594725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 200 - 393
Target Start/End: Complemental strand, 26593920 - 26593735
Alignment:
| Q |
200 |
tgaatcattccggttgatacattgggacaatgggacatgttatcaaaaataatttcaataattaacttatgggttttctaagacgctttatcttagagcc |
299 |
Q |
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| T |
26593920 |
tgaatcattccgattgataaattgggacaatgggacatgttatcaaaaataatttcaataattaacctatgggttttctaagacgctttatcttagagcc |
26593821 |
T |
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| Q |
300 |
atatgtttagagggaaacggtggtcatagttcctttaaacatatatagatcaaatagacgatgggacacaaattgaagaaagaacaagcagtga |
393 |
Q |
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| T |
26593820 |
atatgtttacagggaaacggtggtcatagttcctt--------tatagatcgaatagacgatgggacacacattgaagaaagaacaagcagtga |
26593735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 203
Target Start/End: Complemental strand, 26593972 - 26593937
Alignment:
| Q |
168 |
ttatttaatagctaggttatcaactaatgagttgaa |
203 |
Q |
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| T |
26593972 |
ttatttaatagctaggttatcaactaatgagttgaa |
26593937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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