View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21087_low_23 (Length: 404)
Name: NF21087_low_23
Description: NF21087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21087_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 183 - 388
Target Start/End: Original strand, 1206313 - 1206518
Alignment:
| Q |
183 |
ccaccaaccagaatcatgatcttgttgttcatcatccgctggaattggcagtctgatgtgataacgcttcatgtaggcgttgaatcctaaatgtttatgc |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1206313 |
ccaccaaccagaatcatgatcttgttgttcatcatccgctggaattggcagtctgatgtgataacgcttcatgtaggcgttgaatcctaaatgtttatgc |
1206412 |
T |
|
| Q |
283 |
ctttaagtacctcattcgccctttctttgaattcttgaacttgaaatatgatgatttgataatcattcatgcaggtcttgaaatcatttatgtctttcac |
382 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1206413 |
ctttaagtacctcattcgccctttgtttgaattcttgaacttgaaatatgatgatttgataatcattcatgcaggtcttgaaatcatttatgtctttcac |
1206512 |
T |
|
| Q |
383 |
aaattc |
388 |
Q |
| |
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|||||| |
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| T |
1206513 |
aaattc |
1206518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 1206130 - 1206251
Alignment:
| Q |
1 |
taatcaaggcagtgatcattgtttcccatggacagtgcatgaacccataacccctattttaatagcaactatcagttttacaagaaatatatttctatca |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1206130 |
taatcaaggcagtgatcattgtttcccatggagagtgcatgaacccataacccctattttaatagcaactatcagttttacaagaaatatatttctatca |
1206229 |
T |
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| Q |
101 |
taagttatcaaaatatgtgaag |
122 |
Q |
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|||||||||||||||||||||| |
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| T |
1206230 |
taagttatcaaaatatgtgaag |
1206251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 221 - 381
Target Start/End: Original strand, 30865206 - 30865376
Alignment:
| Q |
221 |
ctggaattggcagtctgatgtgataacgcttcatgtaggcgttgaatcc------taaatgtttatg-cctttaagtacctcattcgccctttctttgaa |
313 |
Q |
| |
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|||| |||||||||||||| ||||| |||||||||||| ||||||||| ||||||||| || ||||| ||||| |||||| || ||| || ||| |
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| T |
30865206 |
ctgggattggcagtctgattcgataatgcttcatgtaggtgttgaatcccaagattaaatgtttctggcctttgagtacatcattcaccttttgttagaa |
30865305 |
T |
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| Q |
314 |
ttcttgaacttgaaatatgatgatttgataatca---ttcatgcaggtcttgaaatcatttatgtctttca |
381 |
Q |
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|||||||||| ||| |||||||||||||| |||| |||||||||||||||||||||| ||||||||||| |
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| T |
30865306 |
ttcttgaactggaagtatgatgatttgatgatcattcttcatgcaggtcttgaaatcatctatgtctttca |
30865376 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 204 - 379
Target Start/End: Complemental strand, 3045776 - 3045594
Alignment:
| Q |
204 |
ttgttgttcatcatccgctggaattggcagtctgatgtgataacgcttcatgtaggcgttgaatcctaaa------tgtttatgcc-tttaagtacctca |
296 |
Q |
| |
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|||||| | |||||| |||||||||| |||||||| || || ||||||||||||| |||||||||||| | |||||||| |||||||||||| |
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| T |
3045776 |
ttgttgattatcatcgactggaattggtagtctgattcgacaatgcttcatgtaggcattgaatcctaaaattaaatatttatgccctttaagtacctcg |
3045677 |
T |
|
| Q |
297 |
ttcgccctttctttgaattcttgaacttgaaatatgatgatttgataatcattcatgcaggtcttgaaatcatttatgtcttt |
379 |
Q |
| |
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||| ||||||||||||| ||||||||| ||| || ||| |||| ||| |||||||||||||||||||||| |||| |||| |
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| T |
3045676 |
ttcaccctttctttgaactcttgaactggaagtacgattggatgatgatccttcatgcaggtcttgaaatcatctatggcttt |
3045594 |
T |
|
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