View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21087_low_24 (Length: 394)
Name: NF21087_low_24
Description: NF21087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21087_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 16404693 - 16405056
Alignment:
| Q |
1 |
aatctaaaaaagattattttaatcaaagatcaaactcgagatttaccaaaacaattatttttggatctaagggttatttaatagaaaaatggtatagtat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
16404693 |
aatctaaaaaagattattttaatcaaagatcaaactcgagatttaccaagacaattatttttggatctaagaggtatttaatagaaaaatggtat----- |
16404787 |
T |
|
| Q |
101 |
agtgtaacagtgagaatcttcaaaacccaaatcaaatttgttttttacttcttgtactccaagtttggcatctagtttggtatattttaaggacagaact |
200 |
Q |
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|||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16404788 |
agtgtaactgtgagaatctttaaaacccaaatcaaatttgtttttgacttcttgtactccaagtttggcatctagtttggtatattttaaggacagaact |
16404887 |
T |
|
| Q |
201 |
tggtcactgtttaatatcaagctgtccatatcagcagctatgttaatttaagaccattcctttttgttttcgcatatgtgtcacac-nnnnnnnnnnaga |
299 |
Q |
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||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
16404888 |
tggtcactgtttaatatcaagttgtccatatcaccagctatgttaatttaagaccattcctttttgttttcgcatatgtgtcacacattttttttttagg |
16404987 |
T |
|
| Q |
300 |
attcaaactcaattggtttagcatattgtgggagtttagcccataccactaaactcaatcatctgcata |
368 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16404988 |
attcaaactcaattggtttagcatattgtgggagtttagcccataccactaaactcaatcatctgcata |
16405056 |
T |
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