View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21087_low_26 (Length: 392)
Name: NF21087_low_26
Description: NF21087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21087_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 9 - 377
Target Start/End: Complemental strand, 1607895 - 1607527
Alignment:
| Q |
9 |
agcaaaggtactaacaatgattttatatttttctatttaaaatttaagtattgtactgctaaaaggttattcaataactttattcatgaagaattaaatg |
108 |
Q |
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| T |
1607895 |
agcaaaggtactaacaatgattttatatttttctatttaaaatttaagtattgtgctgctaaaaagttattcaataactttatttaggaagaattaaatg |
1607796 |
T |
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| Q |
109 |
taagataaattattgaatgtttattttgtgacatacatagagtaatataaatatgatagggttgaaaatgggaagataaaaatgaattttaaaataagaa |
208 |
Q |
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| T |
1607795 |
aaagataaattatggaatgtttattttgtgacatacatagagtaatataaatatgatagggttgaaaatgggaagataaaaatgaattttaaaataacaa |
1607696 |
T |
|
| Q |
209 |
gacacaaagagcaattataatgtgtagatgttcaagtatcttcaatattttaggtatataatgttttaattttttcctnnnnnnnntgttaaaattttgt |
308 |
Q |
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| T |
1607695 |
gacacaaagagcaattataatttgtagatgttcaagtatcttcaatattttaggtatataatgttttaattttttcttaaaaaaaatgttaaaattttgt |
1607596 |
T |
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| Q |
309 |
aatctccagatttacatttgattcatatgataatattgatgtcataacactatcgcttatgtacttttt |
377 |
Q |
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| T |
1607595 |
aatctccagatttaaatttgattcatatgataatattgatgtcataacactatcgcttatgtacttttt |
1607527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 45 - 376
Target Start/End: Complemental strand, 1630852 - 1630521
Alignment:
| Q |
45 |
ttaaaatttaagtattgtactgctaaaaggttattcaataactttattcatgaagaattaaatgtaagataaattattgaatgtttattttgtgacatac |
144 |
Q |
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| T |
1630852 |
ttaaaatttaagtattgtactgctaaaaggttattcaataactttattcaggaagaattaaatgaaagataaattattgagtgtttattttgtgacatac |
1630753 |
T |
|
| Q |
145 |
atagagtaatataaatatgatagggttgaaaatgggaagataaaaatgaattttaaaataagaagacacaaagagcaattataatgtgtagatgttcaag |
244 |
Q |
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| T |
1630752 |
atagagtaatataaatatgatagggttgaaaatgggaagataaaaatgaattttaaaataagaagacacaaagagcaattataatgtgtagatgttcaag |
1630653 |
T |
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| Q |
245 |
tatcttcaatattttaggtatataatgttttaattttttcctnnnnnnnntgttaaaattttgtaatctccagatttacatttgattcatatgataatat |
344 |
Q |
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||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1630652 |
tatattcaatattttaggtatataatgttttaattttttcctaaaaaaaatgttaaaattttgtaatctccagatttacatttgattcatataataatat |
1630553 |
T |
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| Q |
345 |
tgatgtcataacactatcgcttatgtactttt |
376 |
Q |
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||| |||||| ||||||||||||||||||||| |
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| T |
1630552 |
tgaagtcatagcactatcgcttatgtactttt |
1630521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 11 - 376
Target Start/End: Complemental strand, 1624900 - 1624538
Alignment:
| Q |
11 |
caaaggtactaacaatgattttatatttttctatttaaaatttaagtattgtactgctaaaaggttattcaataactttattcatgaagaattaaatgta |
110 |
Q |
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|||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| | ||||||||||||| | |
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| T |
1624900 |
caaaggtattaacaatgattttatttttttctatttaaaatt-aagtattgtactgctaaaaaattattcaataactttatttaggaagaattaaatgaa |
1624802 |
T |
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| Q |
111 |
agataaattattgaatgtttattttgtgacatacatagagtaatataaatatgatagggttgaaaatgggaagataaaaatgaattttaaaataagaaga |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||| |
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| T |
1624801 |
agataaattattgaatgtttattttgtgacatacatagagtaatataaatatgatagggttaaaaatgggtatataaaaatgaattttaaaataagaaga |
1624702 |
T |
|
| Q |
211 |
cacaaagagcaattataatgtgtagatgttcaagtatcttcaatattttaggtatataatgttttaattttttcctnnnnnnnntgttaaaattttgtaa |
310 |
Q |
| |
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||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
1624701 |
cac--agagcaattataatttgtagatgttcaagtatcttcaatattttaggtatataatgttttaattttttcttaaaaaaaatgttaaaattttgtaa |
1624604 |
T |
|
| Q |
311 |
tctccagatttacatttgattcatatgataatattgatgtcataacactatcgcttatgtactttt |
376 |
Q |
| |
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|||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1624603 |
tctccagatttaaatttaattcatatgataatattgatgtcataacactatggcttatgtactttt |
1624538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 170 - 284
Target Start/End: Original strand, 10819521 - 10819635
Alignment:
| Q |
170 |
ttgaaaatgggaagataaaaatgaattttaaaataagaagacacaaagagcaattataatgtgtagatgttcaagtatcttcaatattttaggtatataa |
269 |
Q |
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||||||| |||||| |||||| ||||||||||||| ||||||||||||| |||||||||| |||||||| | |||| |||||||| |||||||||||||| |
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| T |
10819521 |
ttgaaaacgggaagctaaaaaagaattttaaaatatgaagacacaaagaacaattataatttgtagatgatgaagtttcttcaattttttaggtatataa |
10819620 |
T |
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| Q |
270 |
tgttttaattttttc |
284 |
Q |
| |
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| T |
10819621 |
agttttaattttttc |
10819635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 183 - 277
Target Start/End: Complemental strand, 1603086 - 1602996
Alignment:
| Q |
183 |
gataaaaatgaattttaaaataagaagacacaaagagcaattataatgtgtagatgttcaagtatcttcaatattttaggtatataatgttttaa |
277 |
Q |
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|||||||| |||||||||||| ||||||||| ||||||||||| |||| ||| | ||||||||||||| |||||||||||||||||||||| |
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| T |
1603086 |
gataaaaaataattttaaaatatgaagacaca----gcaattataatttgtatatgatgaagtatcttcaattttttaggtatataatgttttaa |
1602996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 1631385 - 1631340
Alignment:
| Q |
9 |
agcaaaggtactaacaatgattttatatttttctatttaaaattta |
54 |
Q |
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| T |
1631385 |
agcaaaggtactaacaatgattttatatttttctatttaaaattta |
1631340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 335 - 377
Target Start/End: Original strand, 10819711 - 10819753
Alignment:
| Q |
335 |
atgataatattgatgtcataacactatcgcttatgtacttttt |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10819711 |
atgataatattgatgtcataacactatcgcttatgtacttttt |
10819753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 10819162 - 10819219
Alignment:
| Q |
14 |
aggtactaacaatgattttatatttttctatttaaaatttaagtattgtactgctaaaa |
72 |
Q |
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| T |
10819162 |
aggtactaacaatgattttatttttttctatttaaaa-gtaagtattgtagtgctaaaa |
10819219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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