View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21087_low_29 (Length: 384)
Name: NF21087_low_29
Description: NF21087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21087_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 128; Significance: 4e-66; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 21820245 - 21820098
Alignment:
| Q |
1 |
ctttattttcataattgttggatcatatgacacatgttcaaccctattaaaatcaacaatgtccttaagattgaagttaggacaatatagttgagtgata |
100 |
Q |
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| T |
21820245 |
ctttattttcataattgttggatcatatgacacatgttcacccctattaaaatcaacaatgtccttaagattgaagttaggacagtatagttgagtgata |
21820146 |
T |
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| Q |
101 |
gtattagatattcgagtgtcttccaagtcaaggggggtatttctcatg |
148 |
Q |
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| T |
21820145 |
gtagtagatattcgagtgtcttccaagtcaagggaggtgtttctcatg |
21820098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 291 - 367
Target Start/End: Complemental strand, 21819826 - 21819750
Alignment:
| Q |
291 |
gaaattggagaataaactttaacaattgcaatgtactaaatagttatgctaaaatatgtgcaatttatattggtact |
367 |
Q |
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| T |
21819826 |
gaaattggagaataaactttaacaattgcaatgtactaaatagttatgctaaaatatgtgcaatttctattggtact |
21819750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 237 - 291
Target Start/End: Complemental strand, 21820100 - 21820046
Alignment:
| Q |
237 |
atgtttctactttttggccataccattaaccaaactattagtagttttaaggttg |
291 |
Q |
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| T |
21820100 |
atgtttctactttttggccataccattaaccaaactattagtagttttaaagttg |
21820046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 501068 - 501120
Alignment:
| Q |
46 |
attaaaatcaacaatgtccttaagattgaagttaggacaatatagttgagtga |
98 |
Q |
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| T |
501068 |
attaaaatcaacattgtactcgaggttgaagttaggacaatattgttgagtga |
501120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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