View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21087_low_30 (Length: 345)

Name: NF21087_low_30
Description: NF21087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21087_low_30
NF21087_low_30
[»] chr4 (2 HSPs)
chr4 (10-269)||(55268761-55269018)
chr4 (269-331)||(55269054-55269116)
[»] chr2 (2 HSPs)
chr2 (10-85)||(29952537-29952612)
chr2 (10-86)||(25592353-25592429)
[»] chr6 (2 HSPs)
chr6 (37-89)||(25950296-25950348)
chr6 (49-89)||(25785490-25785530)


Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 10 - 269
Target Start/End: Original strand, 55268761 - 55269018
Alignment:
Q  10 agaagaagaaacacacacaaaaacaaaaacgatatggttgaggaacgcactcctagagagtatgcaaccccatctacggagcagaggagtacccccatcg 109  Q
    ||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  55268761 agaagaagaaacac--acaaaaacaaaaacgatatggctgaggaacgcactcctagagagtatgcaaccccatctaagaagcagaggagtacccccatcg 55268858  T
Q  110 accccgttgacatccttaggtgttgtttggaatttgcatagtacctccaatgttgtttttaatccgtttaattactcactcacacttgaactaaaataag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55268859 accccgttgacatccttaggtgttgtttggaatttgcatagtacctccaatgttgtttttaatccgtttaattactcactcacacttgaactaaaataag 55268958  T
Q  210 tgggagttattagttcaacttcaattataaatggattaaatgaatgatttatagtatgta 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55268959 tgggagttattagttcaacttcaattataaatggattaaatgaatgatttatagtatgta 55269018  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 269 - 331
Target Start/End: Original strand, 55269054 - 55269116
Alignment:
Q  269 atataaaatagaagtaatggattatggttgctttcgtctcattcctccaaatttggatgagat 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  55269054 atataaaatagaagtaatggattatggttgctttcgtctcattcctccaaattgggatgagat 55269116  T

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Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 29952537 - 29952612
Alignment:
Q  10 agaagaagaaacacacacaaaaacaaaaacgatatggttgaggaacgcactcctagagagtatgcaaccccatcta 85  Q
    ||||||||||||||||||||||||| ||||||||| | |||||||| ||||| |||||||||||||||||||||||    
T  29952537 agaagaagaaacacacacaaaaacagaaacgatatagctgaggaacacactcttagagagtatgcaaccccatcta 29952612  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 25592429 - 25592353
Alignment:
Q  10 agaagaagaaacacacacaaaaacaaaaacgatatggttgaggaacgcactcctagagagtatgcaaccccatctac 86  Q
    |||||||||||| ||  ||| || | ||||||||||| |||||||  ||||| ||||||||||||  ||||||||||    
T  25592429 agaagaagaaacgcatgcaataatagaaacgatatggctgaggaatacactcttagagagtatgccgccccatctac 25592353  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 25950296 - 25950348
Alignment:
Q  37 aacgatatggttgaggaacgcactcctagagagtatgcaaccccatctacgga 89  Q
    |||||||||  |||||||||||||| || ||||||||||||||| ||||||||    
T  25950296 aacgatatgactgaggaacgcactcttaaagagtatgcaaccccttctacgga 25950348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 25785530 - 25785490
Alignment:
Q  49 gaggaacgcactcctagagagtatgcaaccccatctacgga 89  Q
    ||||||||||||| || ||||||||||| ||||||||||||    
T  25785530 gaggaacgcactcttaaagagtatgcaatcccatctacgga 25785490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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