View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21087_low_36 (Length: 321)
Name: NF21087_low_36
Description: NF21087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21087_low_36 |
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Alignment Details
Target: chr6 (Bit Score: 136; Significance: 6e-71; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 1996244 - 1996097
Alignment:
| Q |
1 |
ctaaacatatttggatcctatgatgttgagtttaacatacacagaaacaagccaaataggaatgcatgttcttcaaaaaggagtgattcaatgaagttta |
100 |
Q |
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| T |
1996244 |
ctaaacatatttggatcctatgatgttgagtttaacatacacagaaacaagccaaataggaatgcatgttcttcaaaaaggagtgattcaatgaagttta |
1996145 |
T |
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| Q |
101 |
aactaa-gacagtgttgaaacatgaaattcaaacagtgattgattcat |
147 |
Q |
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|||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
1996144 |
aactaatgtcagtgttgaaacatgaaattcaaacagtgattgattcat |
1996097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 189 - 305
Target Start/End: Complemental strand, 1996055 - 1995939
Alignment:
| Q |
189 |
gcataatagccaattagccaaatcaatagctttacacagaatatcatgttgagtcaagtaaactgtgcaatagatggttcaattgatagtttatgaaatg |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1996055 |
gcataatagccaattagccaaatcaatagctttacacagaatatcatgttgagtcaagtaaactgtgcaatagatggttcaattgatagtttatgaaatg |
1995956 |
T |
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| Q |
289 |
tatgaaactttgtcagt |
305 |
Q |
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||||||||||||||||| |
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| T |
1995955 |
tatgaaactttgtcagt |
1995939 |
T |
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