View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21087_low_38 (Length: 312)
Name: NF21087_low_38
Description: NF21087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21087_low_38 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 12 - 256
Target Start/End: Complemental strand, 41984731 - 41984488
Alignment:
| Q |
12 |
ataggaaatatgtgattatatgtatagttaggaatgagaacctggacaactctttttcttccttctctcaattgatcaagggtgataactgataaagcca |
111 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
41984731 |
ataggaaatatgtgattatatgtttagttaggaatgagaacctggacaactctttttcttccttctctcaattgatcaagggtgatagctgataaggcca |
41984632 |
T |
|
| Q |
112 |
tcttgtataaaaagtaatttaagcagtttaatagtttacaactacaggaatatcctattgtagtaaaataaattctatggtattctgcttcatattttct |
211 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41984631 |
tcttgtataaaa-gtaatttaagcagtttaatagtttacaactacaggaatatcctattgtagtaaaataaattctatggtattctgcttcatattttct |
41984533 |
T |
|
| Q |
212 |
gaatcaacccaattatctaacactatctttccttgtcaccttcaa |
256 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
41984532 |
gaatcaacccaattatctagcactatctttccttgtcaccttcaa |
41984488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 41986960 - 41986875
Alignment:
| Q |
12 |
ataggaaatatgtgattatatgtatagttaggaatgagaacctggacaactctttttcttccttctctcaattgatcaagggtgataa |
99 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||||||| || ||||| |||| |||||||| ||||||||||||||||||||| |
|
|
| T |
41986960 |
ataggaaatgtgtgattatatgtatggttaggaatgagaacct-gaaaactc-ttttattccttctttcaattgatcaagggtgataa |
41986875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 235 - 288
Target Start/End: Complemental strand, 41986716 - 41986663
Alignment:
| Q |
235 |
tatctttccttgtcaccttcaagagcagaaaattgttaaaccagtatctggcca |
288 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
41986716 |
tatctttccttgtcaccttaaagagcataaaattgttaaaccagtatctggcca |
41986663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University