View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21087_low_4 (Length: 758)
Name: NF21087_low_4
Description: NF21087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21087_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 465; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 21 - 540
Target Start/End: Original strand, 43186316 - 43186836
Alignment:
| Q |
21 |
aactgataattttcttcatcataaacactaaaataatcttaaaggatacaccggacctctgcatggggggcggaaggcagctgctccgctatcacggcca |
120 |
Q |
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| T |
43186316 |
aactgataattttcttcatcataaacactaaaataatcttaaaggatacaccggacctctgcatggggggcggaaggcagctgctccgctatcacagcca |
43186415 |
T |
|
| Q |
121 |
ctaccgcggctactatcgtctattggcaacagatactcgatgtagcaaaccaattgtgtagccttctgcttgcatgctacccatccctcctaagctttga |
220 |
Q |
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| T |
43186416 |
ccaccgcggctactatcgtctattggcaacagatactcaatgtagcaaaccaatttggtagcctcctgcttgcatgctacccatccctcctaagctttga |
43186515 |
T |
|
| Q |
221 |
caacttcacactatgacaattaggccccacttggatctttggacaatgccacttgaatcttaactat-aggaatccacaacactcattttcattccatct |
319 |
Q |
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| T |
43186516 |
caacttcacactatgacaattaggccccacttgcatctttggacaatgccacttgaatcttaacttttaggaatccacaacactcattttcattccatct |
43186615 |
T |
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| Q |
320 |
tcgaaattcactctgactcgttcttcataacataaattcattcattttcattattcatcgccgaaattcatccggactcgttattaaccaatatattttt |
419 |
Q |
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| T |
43186616 |
tcgaaattcactctgactcgttcttcataacataaattcattaattttcattattcatcgcagaaattcatccggactcgttattaaccaatatattttt |
43186715 |
T |
|
| Q |
420 |
atactaaaataatcaaacattaaaaaggatcttggactgtgtcttaccatgagaaacaaaacattgttatcatacgacccgattaagaatattgttttaa |
519 |
Q |
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| T |
43186716 |
atactaacataatcaaacattaaaaagcatcttggactgtgtcttaccatgagaaacaaaacattgttatcatacgacccgattaagaatattgttttaa |
43186815 |
T |
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| Q |
520 |
ctatgttactatattctgatt |
540 |
Q |
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| T |
43186816 |
ctatgttactatattctgatt |
43186836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 536 - 670
Target Start/End: Original strand, 43187115 - 43187248
Alignment:
| Q |
536 |
tgattatatatagatcacataggtttttaattttcagtttcaacactgaaaatcttccaatcaacggaatagagaagggaatcaagtgtgtttttgattg |
635 |
Q |
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| T |
43187115 |
tgattatatatagatcacataggtttttaattttcagtttcaacactgaaaatcttccgatcaatggaatagagaagggaatcaagtgtgtttttgattg |
43187214 |
T |
|
| Q |
636 |
agtttgaattctcatgactgtgtaaatctgtgttt |
670 |
Q |
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| T |
43187215 |
agtttgaattctcatgactgtgt-aatctgtgttt |
43187248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 670 - 741
Target Start/End: Original strand, 43187860 - 43187931
Alignment:
| Q |
670 |
ttctgctatttgagtagtttaattgcggtttgagtggtttaaaacaattcaaccatgatccagagatattct |
741 |
Q |
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| T |
43187860 |
ttctgttatttgattagtttaattgcggtttgagtgatttaaaacaattcaaccatgatccagagatattct |
43187931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 279 - 335
Target Start/End: Original strand, 23609323 - 23609379
Alignment:
| Q |
279 |
cttaactataggaatccacaacactcattttcattccatcttcgaaattcactctga |
335 |
Q |
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||||||| ||||| |||||||||||||||||||||||| | |||||||||||||| |
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| T |
23609323 |
cttaactgtaggattccacaacactcattttcattccaccagtgaaattcactctga |
23609379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 287 - 347
Target Start/End: Original strand, 23622784 - 23622844
Alignment:
| Q |
287 |
taggaatccacaacactcattttcattccatcttcgaaattcactctgactcgttcttcat |
347 |
Q |
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|||||||||||| ||||||||||||||||| | ||||||| ||||||| || |||||||| |
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| T |
23622784 |
taggaatccacatcactcattttcattccaccaccgaaatttactctgaatcattcttcat |
23622844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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