View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21087_low_42 (Length: 297)
Name: NF21087_low_42
Description: NF21087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21087_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 4 - 280
Target Start/End: Original strand, 7973686 - 7973962
Alignment:
| Q |
4 |
cacacggcaaattcttctccaacggttacgacatcgactgggcacaagacaacaaatcacgcatcatcctcatcgacgatctccttcgttccgtcgtctc |
103 |
Q |
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| T |
7973686 |
cacacggaaaattcttctccaacggttacgacatcgactgggcacaagacaacaaatcacgcatcatcctcatcgacgatctccttcgttccgtcgtctc |
7973785 |
T |
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| Q |
104 |
cgaacttctctctcttcccatgcctaccatcgccgccgtcaccggtcatgcatccgccgcaggttacatcctcgcattatctcacgactatgttttaatg |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
7973786 |
cgaacttctctctcttcccatgcctaccatcgccgccgtcaccggtcacgcatccgccgcaggttacatcctcgcattatctcacgactacgtgttaatg |
7973885 |
T |
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| Q |
204 |
cgatcggatcgtggatttctctacatgagtgagcttgacatcgatcatgtgattccggcgtggtttattgcgattgt |
280 |
Q |
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| T |
7973886 |
cgatccgatcgtggatttctctacatgagtgagcttgacatcgatcatgtgattccggcgtggtttattgcgattgt |
7973962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 241
Target Start/End: Complemental strand, 7967203 - 7966966
Alignment:
| Q |
4 |
cacacggcaaattcttctccaacggttacgacatcgactgggcacaagacaacaaatcacgcatcatcctcatcgacgatctccttcgttccgtcgtctc |
103 |
Q |
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|||||| |||||||||||||||||| || |||||||| ||||||||| |||||||| ||| ||||||||||||| ||| || ||||| ||| | || |
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| T |
7967203 |
cacacgacaaattcttctccaacggctatgacatcgattgggcacaatctaacaaatctcgcttcatcctcatcgatgattcactccgttctgtcctttc |
7967104 |
T |
|
| Q |
104 |
cgaacttctctctcttcccatgcctaccatcgccgccgtcaccggtcatgcatccgccgcaggttacatcctcgcattatctcacgactatgttttaatg |
203 |
Q |
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| T |
7967103 |
cgaactcatttctctccctatgcctaccattgccgttgtcaccggtcacgcctccaccgccggttacatcttcgcactttctcacgactactttttaatg |
7967004 |
T |
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| Q |
204 |
cgatcggatcgtggatttctctacatgagtgagcttga |
241 |
Q |
| |
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| || |||| || ||||||||||| || |||||||| |
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| T |
7967003 |
agctccgatcatgaatttctctacaagaacgagcttga |
7966966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 27962920 - 27962868
Alignment:
| Q |
141 |
gtcaccggtcatgcatccgccgcaggttacatcctcgcattatctcacgacta |
193 |
Q |
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||||||||| | || || |||| |||||||||||||| ||||||||||||||| |
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| T |
27962920 |
gtcaccggtaacgcctcagccgtaggttacatcctcgaattatctcacgacta |
27962868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 28 - 253
Target Start/End: Complemental strand, 55819654 - 55819429
Alignment:
| Q |
28 |
gttacgacatcgactgggcacaagacaacaaatcacgcatcatcctcatcgacgatctccttcgttccgtcgtctccgaacttctctctcttcccatgcc |
127 |
Q |
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|||| |||||||||||||||||| ||||||| || ||||| |||||||||||||||||||| ||| | ||||||||||| ||||||||| |||||| || |
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| T |
55819654 |
gttatgacatcgactgggcacaaaacaacaactctcgcatgatcctcatcgacgatctcctctgtttcatcgtctccgaaattctctctcctcccatacc |
55819555 |
T |
|
| Q |
128 |
taccatcgccgccgtcaccggtcatgcatccgccgcaggttacatcctcgcattatctcacgactatgttttaatgcgatcggatcgtggatttctctac |
227 |
Q |
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|||||||||| |||||||||| | || || || | |||||||||||||| ||||||||| ||||| || ||| |||||| |||||| ||||||||||| |
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| T |
55819554 |
aaccatcgccgtcgtcaccggtaacgcctcagcagtaggttacatcctcggattatctcatgactacgtgttatagcgatcagatcgtagatttctctac |
55819455 |
T |
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| Q |
228 |
atgagtgagcttgacatcgatcatgt |
253 |
Q |
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||||| || ||||||| ||||||||| |
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| T |
55819454 |
atgagcgaacttgacagcgatcatgt |
55819429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 33 - 253
Target Start/End: Original strand, 1068726 - 1068946
Alignment:
| Q |
33 |
gacatcgactgggcacaagacaacaaatcacgcatcatcctcatcgacgatctccttcgttccgtcgtctccgaacttctctctcttcccatgcctacca |
132 |
Q |
| |
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|||||||| |||||| || ||||||| || ||||| |||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||| |||| |
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| T |
1068726 |
gacatcgattgggcataaaacaacaactctcgcatgatcctcatcgacgatctcctccgttccatcgtctccaaacttctctctcttcccatgccaacca |
1068825 |
T |
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| Q |
133 |
tcgccgccgtcaccggtcatgcatccgccgcaggttacatcctcgcattatctcacgactatgttttaatgcgatcggatcgtggatttctctacatgag |
232 |
Q |
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||| | |||||||||| | || || || |||||||||||||| ||||||||||||||| | ||| |||||| ||||||||||||||| ||||||| |
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| T |
1068826 |
tcgttgtcgtcaccggtaacgcctcatccttaggttacatcctcggattatctcacgactacatgttatagcgatcagatcgtggatttctcaacatgag |
1068925 |
T |
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| Q |
233 |
tgagcttgacatcgatcatgt |
253 |
Q |
| |
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|| ||||||| ||||||||| |
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| T |
1068926 |
cgaacttgacagcgatcatgt |
1068946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 14838770 - 14838822
Alignment:
| Q |
141 |
gtcaccggtcatgcatccgccgcaggttacatcctcgcattatctcacgacta |
193 |
Q |
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||||||||| | || || |||| |||||||||||||| ||||||||||||||| |
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| T |
14838770 |
gtcaccggtaacgcctcagccgtaggttacatcctcggattatctcacgacta |
14838822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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