View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21087_low_43 (Length: 290)
Name: NF21087_low_43
Description: NF21087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21087_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 11 - 272
Target Start/End: Original strand, 48041845 - 48042106
Alignment:
| Q |
11 |
cagagactgatatctcaacttagccgagaatcatttcaggagatgatctcttataaatgatgttttttctttacgcaataatcaggggtcgaacctccaa |
110 |
Q |
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| T |
48041845 |
cagagactgatatctcaacttagccgagaatcatttcaggagatgatctcttataaatgatgttttatctttatgcaataatcaggggtcgaacctccaa |
48041944 |
T |
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| Q |
111 |
ctaaatgattaaatgactctttgatatcttgcctagaaaaacatgttagccttagagatcggtagcttcgtccagtggcctcattatcaagagaagagca |
210 |
Q |
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| T |
48041945 |
ctaaatgattaaatgactctttgatatcttgcctagaaaaacatgttagccttagagatcggtagcttcgtccagtggcctcattatcaagagaagagca |
48042044 |
T |
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| Q |
211 |
gccagtttctgttgggtacgttatatgttgaagaacaactaacaattgtgtatccaaataag |
272 |
Q |
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| T |
48042045 |
gccagtttctgttgggtacgttatatgttgaagaacaactaacaattgtgtatccaaataag |
48042106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 272
Target Start/End: Original strand, 48055301 - 48055334
Alignment:
| Q |
239 |
tgaagaacaactaacaattgtgtatccaaataag |
272 |
Q |
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| T |
48055301 |
tgaagaacaaccaacaattgtgtatccaaataag |
48055334 |
T |
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