View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21087_low_47 (Length: 271)
Name: NF21087_low_47
Description: NF21087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21087_low_47 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 46464942 - 46465193
Alignment:
| Q |
1 |
aaacacctgaaagttcaacaaatttaaatatgcatcataattaaatttccctataaagtacaataacattttgaagcatatagnnnnnnntgaggataat |
100 |
Q |
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| T |
46464942 |
aaacacctgaaagttcaacaaatttaaatatgcatcataattaaatttccctataaagtacaataacattttga-------------------ggataat |
46465022 |
T |
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| Q |
101 |
gttatttacctgtacgattctaattagaggacttccctttggagtattgtttctgtagaatgacttacccatgcaaatagacagaattgatagaaagact |
200 |
Q |
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| T |
46465023 |
gttatttacctgtatgattctaattagaggacttccctttggagtattgtttctgtagaatgacttacccatgcaaatagacagaattgatagaaagact |
46465122 |
T |
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| Q |
201 |
gctatagtgcatacagtaaaactccaataccatcctttgttagaactaatccaattaatgaaagtaacacc |
271 |
Q |
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| T |
46465123 |
gctatagtgcatacagtaaaactccaataccatccttggttagaactaatccaattaatgaaagtaacacc |
46465193 |
T |
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