View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21087_low_48 (Length: 269)
Name: NF21087_low_48
Description: NF21087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21087_low_48 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 34044570 - 34044371
Alignment:
| Q |
1 |
ttaaacagttgtgtgtattcttttatttcacaatttctattcttaatttaccaacaatttcatattcctattctacgttctc---aaaagtgagaagtat |
97 |
Q |
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| T |
34044570 |
ttaaacatttgtgtgtattcttttatttcacaatttctattcttaatttaccaacaatttcatattcctattctacgttctcctcaaaagtgagaagtat |
34044471 |
T |
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| Q |
98 |
gagaacctatactaagttgatcaggttgtatatacctcatcaaaaccgttaggagcaagatacaaaaccta-gatcgtagaatggattgaagatggtctt |
196 |
Q |
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| T |
34044470 |
gagaacctatactaagttgatcaggttgtatatacctcatcaaaaccgttaggagcaagatacaaaacctaggatcgtagaatggattgaagatggtctt |
34044371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 34044350 - 34044294
Alignment:
| Q |
194 |
cttggcgaagatcatatcaaagaggctatggtaacctcatacacctcatcaacttgc |
250 |
Q |
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| T |
34044350 |
cttggcgaagatcatatcaaagaggctatcgtaacctcatacacctcatcaacttgc |
34044294 |
T |
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