View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21087_low_5 (Length: 688)
Name: NF21087_low_5
Description: NF21087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21087_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 641; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 641; E-Value: 0
Query Start/End: Original strand, 18 - 678
Target Start/End: Original strand, 5318664 - 5319324
Alignment:
| Q |
18 |
aacttcagcatatagagaaggacaccaacattgaccgagtggtcctttaagacgaactttgtcattgtcaatacctctaaacttaagaagactaaagaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5318664 |
aacttcagcatatagagaaggacaccaacattgatcgagtggtcctttaagacgaactttgtcattgtcaatacctctaaacttaagaagactaaagaaa |
5318763 |
T |
|
| Q |
118 |
tcactccacatttcagcatttttgttctcataaacaccagatcctgaagaaacaagtaacttaacccaccctatatcgtttgagtcgatatctttgtatg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5318764 |
tcactccacatttcagcatttttgttctcataaacaccagatcctgaagaaacaagtaacttaacccaccctatatcgtttgattcgatatctttgtatg |
5318863 |
T |
|
| Q |
218 |
gaaaagggatatgtgtgcattgtagtacaatagcaacaccttctggctctatcccttgatgcaaagcagaacatatttcatctgctaaacgttgaggctc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5318864 |
gaaaagggatatgtgtgcattgtagtacaatagcaacaccttctggctctatcccttgatgcaaagcagaacatatctcatctgctaaacgttgaggctc |
5318963 |
T |
|
| Q |
318 |
ttgaagtcgttttgcaaatgcttcggcaaccctaggaagcttgcttaagcctacaactctttggccagaagggatataacctacatgacacttgacttga |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5318964 |
ttgaagtcgttttgcaaatgcttcggcaaccctaggaagcttgcttaagcctacaactctttggccagaagggatataacctacatgacacttgacttga |
5319063 |
T |
|
| Q |
418 |
aatggtaacaagcaagactcacaataagagtagaggtcaatatctctcacaatcacaagtccacctactccacctccatgaccaattttattattattat |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5319064 |
aatggtaacaagcaagactcacaataagagtagaggtcaatatctctcacaatcacaagtccacctactccacctccatgaccaattttattattattat |
5319163 |
T |
|
| Q |
518 |
ctaggccatcttcagggaataatgcaccttcaataatgtccttcacattttgcctataacctgtagtgaaaagttcaatatccttaagaataatcataat |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5319164 |
ctaggccatcttcagggaataatgcaccttcaataatgtccttcacattttgcctataacctgtagtgaaaagttcaatatccttaagaataatcataat |
5319263 |
T |
|
| Q |
618 |
ttaataatacaaaaatgcaatttttccgcagaaacgatgtgtaattttgaaatcccctatg |
678 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
5319264 |
ttaataatacaaaaatgcaatttttccgcagaaacgatgtgtacttttgaaatccgctatg |
5319324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 280 - 580
Target Start/End: Original strand, 3637476 - 3637773
Alignment:
| Q |
280 |
aaagcagaacatatttcatctgctaaacgttgaggctcttgaagtcgttttgcaaatgcttcggcaaccctaggaagcttgcttaagcctacaactcttt |
379 |
Q |
| |
|
||||| ||||| | ||| ||||| | ||| |||||||||||||||||||| |||||| ||||||| || | || ||||||||||| || |||||||||| |
|
|
| T |
3637476 |
aaagctgaacacacttcgtctgccagacgctgaggctcttgaagtcgtttagcaaatacttcggcgacacgagagagcttgcttaatccaacaactcttt |
3637575 |
T |
|
| Q |
380 |
ggccagaagggatataacctacatgacacttgacttgaaatggtaacaagcaagactcacaataagagtagaggtcaatatctctcacaatcacaagtcc |
479 |
Q |
| |
|
|||||||||||| ||||| |||||||| |||||||| || |||| ||| ||||| ||||| || || ||||||||||| |||| |||||||||||||| |
|
|
| T |
3637576 |
ggccagaagggacgtaaccgacatgacatttgacttggaaaggtagcaaacaagattcacagtaggaatagaggtcaatgtctcggacaatcacaagtcc |
3637675 |
T |
|
| Q |
480 |
acctactccacctccatgaccaattttattattattatctaggccatcttcagggaataatgcaccttcaataatgtccttcacattttgcctataacct |
579 |
Q |
| |
|
||| | ||||| ||||||| ||| ||||||||||||| |||| ||||||| ||||| |||||||||| |||||||||||| ||||| ||||||||| |
|
|
| T |
3637676 |
gcctgcaccaccagcatgaccgatt---ttattattatctatgccagcttcaggaaataaagcaccttcaacaatgtccttcactttttgtctataacct |
3637772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 5e-33; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 224 - 579
Target Start/End: Complemental strand, 19100822 - 19100473
Alignment:
| Q |
224 |
ggatatgtgtgcattgtagtacaatagcaacaccttctggctctatcccttgatgcaaagcagaacatatttcatctgctaaacgttgaggctcttgaag |
323 |
Q |
| |
|
|||| ||||| ||||| |||| || |||||||| ||||||| ||| || ||||||| ||||||||| | ||||| ||| | ||| |||||||||||||| |
|
|
| T |
19100822 |
ggatgtgtgtacattgaagtatgatggcaacaccatctggctttattccatgatgcagagcagaacaaacttcatttgcaagacgctgaggctcttgaag |
19100723 |
T |
|
| Q |
324 |
tcgttttgcaaatgcttcggcaaccctaggaagcttgcttaagcctacaactctttggccagaagggatataacctacatgacacttgacttgaaatggt |
423 |
Q |
| |
|
|| ||||||||| | || ||||| | | || |||||||| || |||||||||| | || || | ||||| |||||||||||||| || ||||| |
|
|
| T |
19100722 |
ccgctttgcaaatacatcagcaacacgggagagtttgcttaaaccaacaactctttcactggagggaacgtaaccgacatgacacttgacctggaatgga |
19100623 |
T |
|
| Q |
424 |
aacaagcaagactcacaataagagtagaggtcaatatctctcacaatcacaagtccacctactccacctccatgaccaattttattattattatctaggc |
523 |
Q |
| |
|
| || ||| ||||| ||||| || | | |||||||||||| |||||||||||||||||| ||||||| |||| |||| | |||||| ||| | |
|
|
| T |
19100622 |
agcatgcatgactcgcaataggaaaacaagtcaatatctctaacaatcacaagtccacctgctccaccagcatggccaactctattat------ctaaac |
19100529 |
T |
|
| Q |
524 |
catcttcagggaataatgcaccttcaataatgtccttcacattttgcctataacct |
579 |
Q |
| |
|
|| ||||||||||||| |||||||||| |||||||||||| |||||||| |||||| |
|
|
| T |
19100528 |
cagcttcagggaataaagcaccttcaacaatgtccttcaccttttgcctgtaacct |
19100473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 250 - 580
Target Start/End: Complemental strand, 21961312 - 21960988
Alignment:
| Q |
250 |
gcaacaccttctggctctatcccttgatgcaaagcagaacatatttcatctgctaaacgttgaggctcttgaagtcgttttgcaaatgcttcggcaaccc |
349 |
Q |
| |
|
|||||| || |||||| ||| || |||||| ||||| |||| | ||||| ||| | ||| |||||||||||||||| ||||||| || || |||| | |
|
|
| T |
21961312 |
gcaacatctgctggctttattccgtgatgcgaagcataacaaacttcatttgcgagacgctgaggctcttgaagtcattttgcagatatatccacaacac |
21961213 |
T |
|
| Q |
350 |
taggaagcttgcttaagcctacaactctttggccagaagggatataacctacatgacacttgacttgaaatggtaacaagcaagactcacaataagagta |
449 |
Q |
| |
|
| || |||||||| || | |||||||| ||||| || | ||||| |||||||||||||| |||||||| | || |||||||| ||||| || | |
|
|
| T |
21961212 |
gggagagtttgcttaaaccgataactctttcaccagagggaacgtaaccaacatgacacttgacctgaaatgggagcacgcaagacttgcaataggaaaa |
21961113 |
T |
|
| Q |
450 |
gaggtcaatatctctcacaatcacaagtccacctactccacctccatgaccaattttattattattatctaggccatcttcagggaataatgcaccttca |
549 |
Q |
| |
|
| ||||| |||||| |||| |||||||||||| ||||||| ||||||||| | |||||||||| || ||||||||||||| ||||||| | |
|
|
| T |
21961112 |
caagtcaagatctctggcaataacaagtccacctgctccaccagcatgaccaact------ctattatctagtacagcttcagggaataaagcaccttga |
21961019 |
T |
|
| Q |
550 |
ataatgtccttcacattttgcctataacctg |
580 |
Q |
| |
|
| ||||||||||| |||||||| ||||||| |
|
|
| T |
21961018 |
actatgtccttcaccttttgcctgtaacctg |
21960988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University