View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21087_low_51 (Length: 259)
Name: NF21087_low_51
Description: NF21087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21087_low_51 |
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| [»] scaffold0653 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 31453341 - 31453108
Alignment:
| Q |
18 |
aaaactatataatcaaaccctggatgggtatctgagaattatcgtctaattccttgtttcaaaccctaaccctaaaaaattaagaaatcgaaataacgaa |
117 |
Q |
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| T |
31453341 |
aaaactatataatcaaaccctggatgggtatctgagaattatcgtctaattccttgtttcaaaccctaaccctaaaaaataaagaaatcgaaataacgaa |
31453242 |
T |
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| Q |
118 |
gaaagggaaaaggggggtttacctgaattccagcacgagaagaacgagaagtgggtttcttcttgtctttgtctttgttagccgcagtggtttttgctgc |
217 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31453241 |
gaatgggaaaaggggggtttacctgaattccagcacgagaagaacgagaagtgggtttcttcttgtctttgtctttgttagccgcagtggtttttgctgc |
31453142 |
T |
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| Q |
218 |
aactagtccttttcctccttttcctgcctttgct |
251 |
Q |
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||| |||||||||||||||||||||||| ||||| |
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| T |
31453141 |
aacgagtccttttcctccttttcctgccattgct |
31453108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 144 - 233
Target Start/End: Complemental strand, 51448936 - 51448847
Alignment:
| Q |
144 |
attccagcacgagaagaacgagaagtgggtttcttcttgtctttgtctttgttagccgcagtggtttttgctgcaactagtccttttcct |
233 |
Q |
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| T |
51448936 |
attccagcacgagaagaacgagaaatgggttccttcttgtctctgtctttgttatccccgatggttttcgctgcaacaagtccttttcct |
51448847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 144 - 251
Target Start/End: Complemental strand, 17200162 - 17200055
Alignment:
| Q |
144 |
attccagcacgagaagaacgagaagtgggtttcttcttgtctttgtctttgttagccgcagtggtttttgctgcaactagtccttttcctccttttcctg |
243 |
Q |
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| T |
17200162 |
attccagcacgagaagaacgagaagtagatttcttcttgtctttgtctttgttagccgcaatggttttcgcgtcaacgagtccctttcctccttctcctg |
17200063 |
T |
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| Q |
244 |
cctttgct |
251 |
Q |
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| T |
17200062 |
ccattgct |
17200055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0653 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0653
Description:
Target: scaffold0653; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 216
Target Start/End: Complemental strand, 6357 - 6296
Alignment:
| Q |
155 |
agaagaacgagaagtgggtttcttcttgtctttgtctttgttagccgcagtggtttttgctg |
216 |
Q |
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| T |
6357 |
agaagaatgagaattaggtttcctcttatctttgtctttgttagccgcggtggttttcgctg |
6296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 9247532 - 9247593
Alignment:
| Q |
155 |
agaagaacgagaagtgggtttcttcttgtctttgtctttgttagccgcagtggtttttgctg |
216 |
Q |
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| T |
9247532 |
agaagaatgagaattaggtttcctcttatctttgtctttgttagccgcggtggttttcgctg |
9247593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 251
Target Start/End: Original strand, 9279982 - 9280083
Alignment:
| Q |
144 |
attccagcacgagaagaacgagaagtgggtttcttcttgtctttgtctttgttagccgcagtggtttttgctgcaactagtccttttcctccttttcctg |
243 |
Q |
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|||| ||||||||| ||||||||||| |||||||| ||||||||||||||||| |||||||| ||||||| || || |||| |||||||||| |
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| T |
9279982 |
attctagcacgagagtaacgagaagtgtgtttcttc------ttgtctttgttagccgcggtggttttctctgcaacaagaccctttcatccttttccta |
9280075 |
T |
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| Q |
244 |
cctttgct |
251 |
Q |
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| T |
9280076 |
ccattgct |
9280083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 251
Target Start/End: Original strand, 9290953 - 9291054
Alignment:
| Q |
144 |
attccagcacgagaagaacgagaagtgggtttcttcttgtctttgtctttgttagccgcagtggtttttgctgcaactagtccttttcctccttttcctg |
243 |
Q |
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|||| ||||||||| ||||||||||| |||||||| ||||||||||||||||| |||||||| ||||||| || || |||| |||||||||| |
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| T |
9290953 |
attctagcacgagagtaacgagaagtgtgtttcttc------ttgtctttgttagccgcggtggttttctctgcaacaagaccctttcatccttttccta |
9291046 |
T |
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| Q |
244 |
cctttgct |
251 |
Q |
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| T |
9291047 |
ccattgct |
9291054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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