View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21087_low_52 (Length: 257)
Name: NF21087_low_52
Description: NF21087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21087_low_52 |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 45437969 - 45437749
Alignment:
| Q |
18 |
atacattatatatcaacaacagtttcttctctaatctcataattatattctaaaaggagattgaaatattaaaatttggatnnnnnnnnnnnnnnnnnnc |
117 |
Q |
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| T |
45437969 |
atacattatatatcaacaacagtttcttctctaatctcataattatatgctaaaaggagattgaaatattaaaatttggattatatataaatatatatac |
45437870 |
T |
|
| Q |
118 |
ctgcttgcttaggaactgaactccaacatccatgaccatatttagtaatatgattcaaaagtttttcatcctcctcaggtgaccatagacctttcctaag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45437869 |
ctgcttgcttaggaactgaactccaacatccatgaccatatttagtaatatgattcaaaagtttttcatcctcctcaggtgaccatagacctttcctaag |
45437770 |
T |
|
| Q |
218 |
cttctgcttgtagcaacaaga |
238 |
Q |
| |
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||||||||||||||||||||| |
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| T |
45437769 |
cttctgcttgtagcaacaaga |
45437749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 129 - 238
Target Start/End: Original strand, 45676263 - 45676372
Alignment:
| Q |
129 |
ggaactgaactccaacatccatgaccatatttagtaatatgattcaaaagtttttcatcctcctcaggtgaccatagacctttcctaagcttctgcttgt |
228 |
Q |
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|||||||| ||||||||||||||||||| ||| || |||| ||||||||| |||||||| || || || ||||| |||||||| | |||||||||||||| |
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| T |
45676263 |
ggaactgagctccaacatccatgaccatgtttggtgatataattcaaaagcttttcatcttcttctggggaccaaagacctttacgaagcttctgcttgt |
45676362 |
T |
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| Q |
229 |
agcaacaaga |
238 |
Q |
| |
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|||||||||| |
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| T |
45676363 |
agcaacaaga |
45676372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 117 - 235
Target Start/End: Original strand, 38269725 - 38269843
Alignment:
| Q |
117 |
cctgcttgcttaggaactgaactccaacatccatgaccatatttagtaatatgattcaaaagtttttcatcctcctcaggtgaccatagacctttcctaa |
216 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||| || || ||||| ||| ||||||||||| || || |||||||||||||||||||||| |
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| T |
38269725 |
cctgcttgcttaggtactgaactccaacatccatgaccatactttgttatatgcctcagtagtttttcatcttcttctggtgaccatagacctttcctaa |
38269824 |
T |
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| Q |
217 |
gcttctgcttgtagcaaca |
235 |
Q |
| |
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||||||||||||| ||||| |
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| T |
38269825 |
gcttctgcttgtaacaaca |
38269843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 132 - 238
Target Start/End: Complemental strand, 37962741 - 37962635
Alignment:
| Q |
132 |
actgaactccaacatccatgaccatatttagtaatatgattcaaaagtttttcatcctcctcaggtgaccatagacctttcctaagcttctgcttgtagc |
231 |
Q |
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||||||||||||||||||||||||| ||| ||||| | ||||||||| || ||||| |||||||| ||||| || |||||||| | ||||||||||||| |
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| T |
37962741 |
actgaactccaacatccatgaccatgtttggtaatgtaattcaaaagcttctcatcttcctcaggagaccaaagtcctttccttaatttctgcttgtagc |
37962642 |
T |
|
| Q |
232 |
aacaaga |
238 |
Q |
| |
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| ||||| |
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| T |
37962641 |
agcaaga |
37962635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 238
Target Start/End: Original strand, 5921400 - 5921509
Alignment:
| Q |
129 |
ggaactgaactccaacatccatgaccatatttagtaatatgattcaaaagtttttcatcctcctcaggtgaccatagacctttcctaagcttctgcttgt |
228 |
Q |
| |
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||||| ||||||||||| ||||| |||||| | ||||||| || | ||||||||||| || ||||||||||||| ||| | ||| |||||| |||| |
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| T |
5921400 |
ggaacagaactccaacaaccatgtccatatgttgtaatatatttgatgagtttttcatcttcttcaggtgaccataatcctcttttaaccttctgtttgt |
5921499 |
T |
|
| Q |
229 |
agcaacaaga |
238 |
Q |
| |
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||||||||| |
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|
| T |
5921500 |
tgcaacaaga |
5921509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 238
Target Start/End: Original strand, 5960558 - 5960667
Alignment:
| Q |
129 |
ggaactgaactccaacatccatgaccatatttagtaatatgattcaaaagtttttcatcctcctcaggtgaccatagacctttcctaagcttctgcttgt |
228 |
Q |
| |
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||||| ||||||||||| ||||| |||||| | ||||||| || | ||||||||||| || ||||||||||||| ||| | ||| |||||| |||| |
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| T |
5960558 |
ggaacagaactccaacaaccatgtccatatgttgtaatatatttgatgagtttttcatcttcttcaggtgaccataatcctcttttaaccttctgtttgt |
5960657 |
T |
|
| Q |
229 |
agcaacaaga |
238 |
Q |
| |
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||||||||| |
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| T |
5960658 |
tgcaacaaga |
5960667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 238
Target Start/End: Original strand, 5984820 - 5984929
Alignment:
| Q |
129 |
ggaactgaactccaacatccatgaccatatttagtaatatgattcaaaagtttttcatcctcctcaggtgaccatagacctttcctaagcttctgcttgt |
228 |
Q |
| |
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||||| ||||||||||| ||||| |||||| | ||||||| || | ||||||||||| || ||||||||||||| ||| | ||| |||||| |||| |
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| T |
5984820 |
ggaacagaactccaacaaccatgtccatatgttgtaatatatttgatgagtttttcatcttcttcaggtgaccataatcctcttttaaccttctgtttgt |
5984919 |
T |
|
| Q |
229 |
agcaacaaga |
238 |
Q |
| |
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||||||||| |
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|
| T |
5984920 |
tgcaacaaga |
5984929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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