View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21087_low_56 (Length: 250)

Name: NF21087_low_56
Description: NF21087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21087_low_56
NF21087_low_56
[»] chr4 (2 HSPs)
chr4 (1-245)||(52794884-52795128)
chr4 (1-56)||(42103715-42103770)
[»] chr5 (1 HSPs)
chr5 (1-245)||(20642081-20642325)
[»] chr6 (3 HSPs)
chr6 (3-226)||(33159801-33160024)
chr6 (112-199)||(31403959-31404046)
chr6 (114-199)||(984074-984159)
[»] chr7 (3 HSPs)
chr7 (15-226)||(3255789-3256001)
chr7 (112-199)||(13713689-13713776)
chr7 (114-199)||(35249802-35249887)
[»] chr2 (3 HSPs)
chr2 (89-209)||(29695643-29695763)
chr2 (135-209)||(1617756-1617830)
chr2 (112-199)||(27691247-27691334)
[»] chr1 (1 HSPs)
chr1 (1-56)||(27244151-27244206)
[»] chr8 (2 HSPs)
chr8 (135-209)||(6383922-6383996)
chr8 (114-199)||(2000864-2000949)
[»] chr3 (1 HSPs)
chr3 (135-209)||(42573863-42573937)


Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 52795128 - 52794884
Alignment:
Q  1 cttctgcagaggctgaatatcggtctatggcaaccactacatgtgagttaaaatggttaaaagggattctttccaacctgggagttgttcatgataaacc 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52795128 cttctgcagaggctgaatatcggtctatggcaaacactacatgtgagttaaaatggttaaaagggattctttccaacctgggagttgttcatgataaacc 52795029  T
Q  101 aatgatcattcactgtgacagtcaagcggctatccacattgccaaaaatccggtgttccatgaacgtacgaagcacattgaagttgactgtcattttgtc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52795028 aatgatcattcactgtgacagtcaagcggctatccacattgccaaaaatccggtgttccatgaacgtacgaagcacattgaagttgactgtcattttgtc 52794929  T
Q  201 cggaatgaagttctcaaaaataatattcttccggcctatgcttct 245  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||    
T  52794928 cggaatgaagttctcaaaaataatattcttccggtctatgtttct 52794884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 42103770 - 42103715
Alignment:
Q  1 cttctgcagaggctgaatatcggtctatggcaaccactacatgtgagttaaaatgg 56  Q
    |||||||||||||||| ||||| |||||||| |  |||||||||||||||||||||    
T  42103770 cttctgcagaggctgagtatcgctctatggcgatgactacatgtgagttaaaatgg 42103715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 20642081 - 20642325
Alignment:
Q  1 cttctgcagaggctgaatatcggtctatggcaaccactacatgtgagttaaaatggttaaaagggattctttccaacctgggagttgttcatgataaacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20642081 cttctgcagaggctgaatatcggtctatggcaaccactacatgtgagttaaaatggttaaaagggattctttccaacctgggagttgttcatgataaacc 20642180  T
Q  101 aatgatcattcactgtgacagtcaagcggctatccacattgccaaaaatccggtgttccatgaacgtacgaagcacattgaagttgactgtcattttgtc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20642181 aatgatcattcactgtgacagtcaagcggctatccacattgccaaaaatccggtgttccatgaacgtacgaagcacattgaagttgactgtcattttgtc 20642280  T
Q  201 cggaatgaagttctcaaaaataatattcttccggcctatgcttct 245  Q
    || ||||||||||||||||||||||||||||| | ||||| ||||    
T  20642281 cgaaatgaagttctcaaaaataatattcttccagtctatgtttct 20642325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 116; Significance: 4e-59; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 3 - 226
Target Start/End: Original strand, 33159801 - 33160024
Alignment:
Q  3 tctgcagaggctgaatatcggtctatggcaaccactacatgtgagttaaaatggttaaaagggattctttccaacctgggagttgttcatgataaaccaa 102  Q
    ||||| ||||| |||||| |||| |||||||| |||||||| ||||||||||||||||| ||||| || |||||||| ||||||| |||||||||||| |    
T  33159801 tctgctgaggcggaatataggtccatggcaactactacatgcgagttaaaatggttaaaggggatcctctccaacctaggagttgctcatgataaaccca 33159900  T
Q  103 tgatcattcactgtgacagtcaagcggctatccacattgccaaaaatccggtgttccatgaacgtacgaagcacattgaagttgactgtcattttgtccg 202  Q
    |||| ||||||||||| ||||||||  |  | |||||||| |||||||| ||||||||||||||||| |||||||||||||| || ||||||||||| ||    
T  33159901 tgattattcactgtgatagtcaagcaaccttacacattgcgaaaaatcctgtgttccatgaacgtaccaagcacattgaagtggattgtcattttgttcg 33160000  T
Q  203 gaatgaagttctcaaaaataatat 226  Q
    ||| |||||||||||||| |||||    
T  33160001 gaacgaagttctcaaaaacaatat 33160024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 199
Target Start/End: Original strand, 31403959 - 31404046
Alignment:
Q  112 actgtgacagtcaagcggctatccacattgccaaaaatccggtgttccatgaacgtacgaagcacattgaagttgactgtcattttgt 199  Q
    |||||||||| ||| | ||  |||| |||||||| ||||||||  ||||||||||||| || || ||||| ||||| |||||||||||    
T  31403959 actgtgacagccaatctgccctccatattgccaataatccggtactccatgaacgtacaaaacatattgaggttgattgtcattttgt 31404046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 199
Target Start/End: Complemental strand, 984159 - 984074
Alignment:
Q  114 tgtgacagtcaagcggctatccacattgccaaaaatccggtgttccatgaacgtacgaagcacattgaagttgactgtcattttgt 199  Q
    ||||| |||||||| || || ||||||||| ||||||| || || || ||||| || || ||||||||| |||| |||||||||||    
T  984159 tgtgatagtcaagctgccattcacattgccgaaaatccagtttttcacgaacgcaccaaacacattgaaattgattgtcattttgt 984074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 8e-36; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 15 - 226
Target Start/End: Original strand, 3255789 - 3256001
Alignment:
Q  15 gaatatcggtctatggcaaccactacatgtgagttaaaatggttaaaagggattctttccaacctgggagttgttcatgataaaccaatgatcattcact 114  Q
    |||||| ||||||||||||| |||||||| ||||||||||||||| |  |||| || |||||||| ||||||| | |||||||||| ||||  |||||||    
T  3255789 gaatataggtctatggcaactactacatgagagttaaaatggttacagaggatcctctccaacctaggagttgctaatgataaacccatgactattcact 3255888  T
Q  115 gtgacagtcaag-cggctatccacattgccaaaaatccggtgttccatgaacgtacgaagcacattgaagttgactgtcattttgtccggaatgaagttc 213  Q
     ||| ||||| | | |   | ||||||||||||||||  ||||||||||||||||| || ||||||||||| ||| |||||||||| |||||  ||||||    
T  3255889 atgatagtcatggcagtcttacacattgccaaaaatcttgtgttccatgaacgtaccaaacacattgaagtagaccgtcattttgttcggaaaaaagttc 3255988  T
Q  214 tcaaaaataatat 226  Q
    ||||||| |||||    
T  3255989 tcaaaaacaatat 3256001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 199
Target Start/End: Original strand, 13713689 - 13713776
Alignment:
Q  112 actgtgacagtcaagcggctatccacattgccaaaaatccggtgttccatgaacgtacgaagcacattgaagttgactgtcattttgt 199  Q
    |||||||||| ||| | ||  |||| |||||||| ||||||||  ||||||||||||| || || ||||| ||||| |||||||||||    
T  13713689 actgtgacagccaatctgccctccatattgccaataatccggtactccatgaacgtacaaaacatattgaggttgattgtcattttgt 13713776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 199
Target Start/End: Complemental strand, 35249887 - 35249802
Alignment:
Q  114 tgtgacagtcaagcggctatccacattgccaaaaatccggtgttccatgaacgtacgaagcacattgaagttgactgtcattttgt 199  Q
    ||||| |||||||| || || ||||||||| ||||||| || || || ||||| || || ||||||||| |||| |||||||||||    
T  35249887 tgtgatagtcaagctgccattcacattgccgaaaatccagtttttcacgaacgcaccaaacacattgaaattgattgtcattttgt 35249802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 89 - 209
Target Start/End: Original strand, 29695643 - 29695763
Alignment:
Q  89 tcatgataaaccaatgatcattcactgtgacagtcaagcggctatccacattgccaaaaatccggtgttccatgaacgtacgaagcacattgaagttgac 188  Q
    |||||| ||||| ||||||||||||| |||||||||||||||||| ||||| ||||| || ||||||||||||||||| || || ||||||||||| ||     
T  29695643 tcatgacaaaccgatgatcattcactatgacagtcaagcggctatacacatcgccaagaacccggtgttccatgaacgcactaaacacattgaagtcgat 29695742  T
Q  189 tgtcattttgtccggaatgaa 209  Q
    |||||||||||||||||||||    
T  29695743 tgtcattttgtccggaatgaa 29695763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 135 - 209
Target Start/End: Complemental strand, 1617830 - 1617756
Alignment:
Q  135 cacattgccaaaaatccggtgttccatgaacgtacgaagcacattgaagttgactgtcattttgtccggaatgaa 209  Q
    |||||||| || ||||| || |||||||||||||| || ||||||||||| ||||||||||| || || ||||||    
T  1617830 cacattgcaaagaatcccgtcttccatgaacgtaccaaacacattgaagtggactgtcatttcgttcgtaatgaa 1617756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 199
Target Start/End: Original strand, 27691247 - 27691334
Alignment:
Q  112 actgtgacagtcaagcggctatccacattgccaaaaatccggtgttccatgaacgtacgaagcacattgaagttgactgtcattttgt 199  Q
    |||||||||| ||| | ||  |||| |||||||| ||||||||  ||||||||||||| || || ||||| ||||| |||||||||||    
T  27691247 actgtgacagccaatctgccctccatattgccaataatccggtactccatgaacgtacaaaacatattgaggttgattgtcattttgt 27691334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 27244206 - 27244151
Alignment:
Q  1 cttctgcagaggctgaatatcggtctatggcaaccactacatgtgagttaaaatgg 56  Q
    |||||||||||||||| ||||| |||||||| |  |||||||||||||||||||||    
T  27244206 cttctgcagaggctgagtatcgctctatggcgatgactacatgtgagttaaaatgg 27244151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 6383922 - 6383996
Alignment:
Q  135 cacattgccaaaaatccggtgttccatgaacgtacgaagcacattgaagttgactgtcattttgtccggaatgaa 209  Q
    |||||||| || ||||| || |||||||||||||| || ||||||||||| ||||||||||| || || ||||||    
T  6383922 cacattgcaaagaatcccgtcttccatgaacgtaccaaacacattgaagtggactgtcatttcgttcgtaatgaa 6383996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 199
Target Start/End: Original strand, 2000864 - 2000949
Alignment:
Q  114 tgtgacagtcaagcggctatccacattgccaaaaatccggtgttccatgaacgtacgaagcacattgaagttgactgtcattttgt 199  Q
    ||||| |||||||| || || ||||||||| ||||||| || || || ||||| || || ||||||||| |||| |||||||||||    
T  2000864 tgtgatagtcaagctgccattcacattgccgaaaatccagtttttcacgaacgcaccaaacacattgaaattgattgtcattttgt 2000949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 42573863 - 42573937
Alignment:
Q  135 cacattgccaaaaatccggtgttccatgaacgtacgaagcacattgaagttgactgtcattttgtccggaatgaa 209  Q
    |||||||| || ||||| || |||||||||||||| || ||||||||| | ||||||||||| || || ||||||    
T  42573863 cacattgcaaagaatcccgtcttccatgaacgtaccaaacacattgaattggactgtcatttcgttcgtaatgaa 42573937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University