View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21087_low_57 (Length: 247)
Name: NF21087_low_57
Description: NF21087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21087_low_57 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 10703169 - 10702930
Alignment:
| Q |
1 |
tcattgtaattctattctcttctaaaaccgacatctatataggttttgtaagtctttttattgataaatcgtgtaattcgaaaaatcaagacttcacgtg |
100 |
Q |
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| T |
10703169 |
tcattgtaattctattctcttctaaaaccgacatctatataggttttgtaagtctttttattgataaatcgtgtaattcgaaaaatcaagacttcacgtg |
10703070 |
T |
|
| Q |
101 |
gatttatggaggcaagataatgacgatcagtagagctcaagaaggtttttgcagacaatacaagttcgggaaattctgtcccaagatagcatggaagaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10703069 |
gatttatggaggcaagataatgacgatcagtagagctcaagaaggtttttgcagacaatacaagttcgggaaattctgtcccaagatagcatggaagaac |
10702970 |
T |
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| Q |
201 |
acaaagtgaacgaacaaaaatggaattttccgcacctttg |
240 |
Q |
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| T |
10702969 |
acaaagtgaacgaacaaaaatggaattttccgcacctttg |
10702930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 66 - 163
Target Start/End: Original strand, 19217913 - 19218010
Alignment:
| Q |
66 |
aaatcgtgtaattcgaaaaatcaagacttcacgtggatttatggaggcaagataatgacgatcagtagagctcaagaaggtttttgcagacaatacaa |
163 |
Q |
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| T |
19217913 |
aaatcatgtaaatcggcaaatcaagacatcacgtggagttatggaggcaagagaatgaagatcaaaggagttcaagaaggtttttgaaggcaatacaa |
19218010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 123
Target Start/End: Original strand, 28413902 - 28414003
Alignment:
| Q |
22 |
ctaaaaccgacatctatataggttttgtaagtctttttattgataaatcgtgtaattcgaaaaatcaagacttcacgtggatttatggaggcaagataat |
121 |
Q |
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|||||||||||| ||| |||||| || | ||| ||||| ||||||||| ||||| || ||||||||||| |||| | || |||||||||||||| ||| |
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| T |
28413902 |
ctaaaaccgacaactacataggtgttctgggtcattttagtgataaatcatgtaaatcagaaaatcaagacatcacatagagttatggaggcaagagaat |
28414001 |
T |
|
| Q |
122 |
ga |
123 |
Q |
| |
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|| |
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| T |
28414002 |
ga |
28414003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 79
Target Start/End: Original strand, 2351108 - 2351138
Alignment:
| Q |
49 |
taagtctttttattgataaatcgtgtaattc |
79 |
Q |
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| T |
2351108 |
taagtctttttattgataaatcgtgtaattc |
2351138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 121
Target Start/End: Complemental strand, 23946844 - 23946774
Alignment:
| Q |
51 |
agtctttttattgataaatcgtgtaattcgaaaaatcaagacttcacgtggatttatggaggcaagataat |
121 |
Q |
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|||||||||||||||||||| ||||| | |||||||| ||| || | |||| ||||||| |||||||||| |
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| T |
23946844 |
agtctttttattgataaatcatgtaactaaaaaaatcatgacatctcatggagttatggaagcaagataat |
23946774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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