View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21087_low_58 (Length: 246)
Name: NF21087_low_58
Description: NF21087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21087_low_58 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 27974647 - 27974404
Alignment:
| Q |
1 |
atctgatcttcgatttcccaatacttttcgtatgcgcgctcatacacgcttctcacaaactctttctcggtctgcagcgccaaaatatccttctgaagtt |
100 |
Q |
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| T |
27974647 |
atctgatcttcgatttcccaatacttttcgtatgcgcgctcatacacgcttctcacaaactctttctcggtctgcagcgccaaaatatccttctgaagtt |
27974548 |
T |
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| Q |
101 |
tgtcgatctcacctattgcttcagctttggtaagatctgatcctggagttgttggaataaattttgaaa---aagttctcttagttggaccttttcgaga |
197 |
Q |
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|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
27974547 |
tgtcgatctcgcctattgcttcagttttggtaagatctgatcctggagttgttggaataaattttgaaaaagaagttctcttagttggaccttttcggga |
27974448 |
T |
|
| Q |
198 |
tagtaacatcgaaggacttcgaaaatctttctttggaacctttg |
241 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
27974447 |
tagcaacatcgaaggacttcgaaaatctttctttggaacctttg |
27974404 |
T |
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