View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21087_low_60 (Length: 243)
Name: NF21087_low_60
Description: NF21087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21087_low_60 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 15 - 243
Target Start/End: Complemental strand, 29252612 - 29252387
Alignment:
| Q |
15 |
tatccctacttagtttcaacaattaaataaagtgatttacaaaatagtttttagaatttgattgatatatgtctattagaccatgcattgagcactctat |
114 |
Q |
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| T |
29252612 |
tatccgtacttagtttcaacaattaaataaagtgatttacaaaatagtatttagaatttgattgat----gtctattagaccatgtatttagcactctat |
29252517 |
T |
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| Q |
115 |
tacaaagcatg---cttgctcgattacttgattacttccttcaatttcaaaggtttctctcttatggttggaattattcttcctggtatttctcatacac |
211 |
Q |
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| T |
29252516 |
tacaaagcatgatgcttcctcgattacttgattacttccttcaatttcaaaggtttctctcttatggttggaattattcttcctggtatttctcat--ac |
29252419 |
T |
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| Q |
212 |
atcctatcagcaacttcctttttcggtgatct |
243 |
Q |
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| T |
29252418 |
atcctatcagcaacttcctttttcggtgatct |
29252387 |
T |
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Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 7249997 - 7249940
Alignment:
| Q |
19 |
cctacttagtttcaacaattaaataaagtgatttacaaaatagtttttagaatttgat |
76 |
Q |
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| T |
7249997 |
cctacttagtttcaacaattaaataaagtgatttacaaaaaagtttttagaatttgat |
7249940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 9212586 - 9212639
Alignment:
| Q |
21 |
tacttagtttcaacaattaaataaagtgatttacaaaatagtttttagaatttg |
74 |
Q |
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| T |
9212586 |
tacttagtttcaacaattaaataaagtgatctacaaaatattctttagaatttg |
9212639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 60
Target Start/End: Complemental strand, 9892572 - 9892544
Alignment:
| Q |
32 |
aacaattaaataaagtgatttacaaaata |
60 |
Q |
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| T |
9892572 |
aacaattaaataaagtgatttacaaaata |
9892544 |
T |
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