View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21087_low_63 (Length: 237)
Name: NF21087_low_63
Description: NF21087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21087_low_63 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 20642015 - 20641794
Alignment:
| Q |
1 |
cagccagtgactaatcgtcgagttaaagggcagctagcccagtccgaatcacacaaaccatgaagtcttaagtcacttttactaccaaaaaatatccctt |
100 |
Q |
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| T |
20642015 |
cagccagtgacttatcgtcgagttaaagggcagctagcccagtccgaatcacaccaaccatgaagtcttaagtcacttttactaccaaaaaatatccctt |
20641916 |
T |
|
| Q |
101 |
gtcctggattcccttttaaaaatcctactactcgtaatgcagcttcccaatgttcagttcggggttgattcatgaattgagacagagtgtgtacactgta |
200 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
20641915 |
gtcctggattcccttttaaaaatcgtactactcgtaatgcagcttcccaatgttcagttaggggttgattcatgaattgagacaaagtgtgtacactgta |
20641816 |
T |
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| Q |
201 |
tgacagttctggccgagtgaaa |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
20641815 |
tgacagttctggccgagtgaaa |
20641794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 52795194 - 52795377
Alignment:
| Q |
1 |
cagccagtgactaatcgtcgagttaaagggcagctagcccagtccgaatcacacaaaccatgaagtcttaagtcacttttactaccaaaaaatatccctt |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52795194 |
cagccagtgactgatcgtcgagttaaagggcagctagcccagtccgaatcacaccaaccatgaagtcttaagtcacttttactaccaaaaaatatccctt |
52795293 |
T |
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| Q |
101 |
gtcctggattcccttttaaaaatcctactactcgtaatgcagcttcccaatgttcagttcggggttgattcatgaattgagaca |
184 |
Q |
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| T |
52795294 |
gtcctggattcccttttaaaaatcgtactactcgtaatgcagcttcccaatgttcagttcggggttgattcatgaattgagaca |
52795377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 188 - 222
Target Start/End: Complemental strand, 52795761 - 52795727
Alignment:
| Q |
188 |
tgtgtacactgtatgacagttctggccgagtgaaa |
222 |
Q |
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| T |
52795761 |
tgtgtacactgtatgacagttctggccgagtgaaa |
52795727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 205
Target Start/End: Complemental strand, 33159653 - 33159529
Alignment:
| Q |
81 |
actaccaaaaaatatcccttgtcctggattcccttttaaaaatcctactactcgtaatgcagcttcccaatgttcagttcggggttgattcatgaattga |
180 |
Q |
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|||||| |||||||| |||||||| ||||| |||||||| || | |||||||| | |||||||||||||||||| |||| ||||| | |||| ||||| |
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| T |
33159653 |
actacccaaaaatattccttgtcccggattaccttttaagaagcgaactactcgaagtgcagcttcccaatgttctgttctaggttgttgcatgtattga |
33159554 |
T |
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| Q |
181 |
gacagagtgtgtacactgtatgaca |
205 |
Q |
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|| | | |||| ||||| ||||||| |
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| T |
33159553 |
gataaaatgtggacactatatgaca |
33159529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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