View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21087_low_65 (Length: 236)
Name: NF21087_low_65
Description: NF21087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21087_low_65 |
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| [»] scaffold0390 (2 HSPs) |
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| [»] scaffold0786 (1 HSPs) |
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| [»] scaffold1678 (1 HSPs) |
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Alignment Details
Target: scaffold0390 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: scaffold0390
Description:
Target: scaffold0390; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 2698 - 2478
Alignment:
| Q |
1 |
acacgaaccacgcgaacgacaccctccatcttggtggggacaatcatgttgttctccataaacgttgtacatgtaccctttctatttacgggtttcacca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
2698 |
acacgaaccacgcgaacgacaccctccatcttggtggggacaatgatgttgttctccataaatgttgtacatgtaccctttgtatttacgggtttcacca |
2599 |
T |
|
| Q |
101 |
tgcaaacctcttcctcatgataaccctgtactttaatgttttagaaaccatctttgtcggtggtactctccttcacaaatgtcacatttttctctccctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2598 |
tgcaaacctcttcctcatgataaccctgtactttaatgttgtagaaaccatctttgtcggtggtactctccttcacaaatgtcacatttttctctccctt |
2499 |
T |
|
| Q |
201 |
agtgcactcaaaagtcacttt |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
2498 |
agtgcactcaaaagtcacttt |
2478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0390; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 15682 - 15462
Alignment:
| Q |
1 |
acacgaaccacgcgaacgacaccctccatcttggtggggacaatcatgttgttctccataaacgttgtacatgtaccctttctatttacgggtttcacca |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
15682 |
acacgaaccacgcgaacgacaccctccatcttggtcgggacaatgatgttgttctccataaatgttgtacatgtaccctttgtatttacgggtttcacca |
15583 |
T |
|
| Q |
101 |
tgcaaacctcttcctcatgataaccctgtactttaatgttttagaaaccatctttgtcggtggtactctccttcacaaatgtcacatttttctctccctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
15582 |
tgcaaacctcttcctcatgataaccctgtactttaatgttgtagaaaccatctttgtcggtggtactctccttcacaaatgtcacatttttatctccctt |
15483 |
T |
|
| Q |
201 |
agtgcactcaaaagtcacttt |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
15482 |
agtgcactcaaaagtcacttt |
15462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0786 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: scaffold0786
Description:
Target: scaffold0786; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 4165 - 3945
Alignment:
| Q |
1 |
acacgaaccacgcgaacgacaccctccatcttggtggggacaatcatgttgttctccataaacgttgtacatgtaccctttctatttacgggtttcacca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
4165 |
acacgaaccacgcgaacgacaccctccatcttggtggggacaatgatgttgttctccataaatgttgtacatgtaccctttgtatttacgggtttcacca |
4066 |
T |
|
| Q |
101 |
tgcaaacctcttcctcatgataaccctgtactttaatgttttagaaaccatctttgtcggtggtactctccttcacaaatgtcacatttttctctccctt |
200 |
Q |
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|
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4065 |
tgcaaacctcttcctcatgataaccgtgtactttaatgttgtagaaaccatctttgtcggtggtactctccttcacaaatgtcacatttttctctccctt |
3966 |
T |
|
| Q |
201 |
agtgcactcaaaagtcacttt |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
3965 |
agtgcactcaaaagtcacttt |
3945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 22138566 - 22138786
Alignment:
| Q |
1 |
acacgaaccacgcgaacgacaccctccatcttggtggggacaatcatgttgttctccataaacgttgtacatgtaccctttctatttacgggtttcacca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
22138566 |
acacgaaccacgcgaacgacaccctccatcttggtcgggacaatgatgttgttctccataaatgttgtacatgtaccctttgtatttacgggtttcacca |
22138665 |
T |
|
| Q |
101 |
tgcaaacctcttcctcatgataaccctgtactttaatgttttagaaaccatctttgtcggtggtactctccttcacaaatgtcacatttttctctccctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
22138666 |
tgcaaacctcttcctcatgataaccctgtactttaatgttgtagaaaccatctttgtcggtggtactctccttcacaaatgtcacatttttatctccctt |
22138765 |
T |
|
| Q |
201 |
agtgcactcaaaagtcacttt |
221 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
22138766 |
agtgcactcaaaagtcacttt |
22138786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 29 - 221
Target Start/End: Original strand, 24429146 - 24429344
Alignment:
| Q |
29 |
tcttggtggggacaatcatgt------tgttctccataaacgttgtacatgtaccctttctatttacgggtttcaccatgcaaacctcttcctcatgata |
122 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||| |||||||| |||| |
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| T |
24429146 |
tcttggtggggacaatcatgtcggatttgttctccataaaccctgtacatgtaccctttgtattttcgggtttcaccatgcaaacgtcttcctcgtgatc |
24429245 |
T |
|
| Q |
123 |
accctgtacttt-aatgttttagaaaccatctttgtcggtggtactctccttcacaaatgtcacatttttctctcccttagtgcactcaaaagtcacttt |
221 |
Q |
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||| | ||| | ||| | ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| | ||||||||| |
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| T |
24429246 |
acctt-tacatacaatcatgtagaaaccatctttgtcggtggtactctccttcttgaatgtcacatttttctatcccttagtgcactctatagtcacttt |
24429344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 49 - 221
Target Start/End: Original strand, 32240803 - 32240975
Alignment:
| Q |
49 |
ttgttctccataaacgttgtacatgtaccctttctatttacgggtttcaccatgcaaacctcttcctcatgataaccctgtacttt-aatgttttagaaa |
147 |
Q |
| |
|
||||||||||| || |||||||||||||||| ||||| ||||||||||||||||||| ||||| | |||| ||| | ||| | ||| | |||||| |
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| T |
32240803 |
ttgttctccattaaatgtgtacatgtaccctttttattttcgggtttcaccatgcaaacgtcttctttgtgattacctt-tacatacaatcatgtagaaa |
32240901 |
T |
|
| Q |
148 |
ccatctttgtcggtggtactctccttcacaaatgtcacatttttctctcccttagtgcactcaaaagtcacttt |
221 |
Q |
| |
|
||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
32240902 |
ccatctttgtcggtggtaccctctgtcttgaatgtcacatttttctctcccttagtgcactctaaagtcacttt |
32240975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 55 - 218
Target Start/End: Complemental strand, 32303546 - 32303383
Alignment:
| Q |
55 |
tccataaacgttgtacatgtaccctttctatttacgggtttcaccatgcaaacctcttcctcatgataaccctgtacttt-aatgttttagaaaccatct |
153 |
Q |
| |
|
||||||| | ||||||||| ||||| |||| ||| ||||||| |||||||||||||||| |||| ||| | ||| || |||||| |||| ||||| | |
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|
| T |
32303546 |
tccataatctttgtacatgcgcccttcacattttcggctttcaccttgcaaacctcttcctcgtgatcacctt-tacattcaatgttgtagacaccattt |
32303448 |
T |
|
| Q |
154 |
ttgtcggtggtactctccttcacaaatgtcacatttttctctcccttagtgcactcaaaagtcac |
218 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||| |||||||| ||||||| |||||||| |
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|
| T |
32303447 |
ttgtcggtggtactctccttcacgaatgtcacgtttttgtctccctttgtgcactttaaagtcac |
32303383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 84 - 218
Target Start/End: Complemental strand, 32295875 - 32295741
Alignment:
| Q |
84 |
atttacgggtttcaccatgcaaacctcttcctcatgataaccctgtacttt-aatgttttagaaaccatctttgtcggtggtactctccttcacaaatgt |
182 |
Q |
| |
|
|||||||| |||||| |||||||||||||||| |||| ||| | ||| || |||||| ||| |||| || ||||||||| ||||||||||||||||| |
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| T |
32295875 |
atttacggcgttcaccttgcaaacctcttcctcgtgatcacctt-tacattcaatgttgtaggtaccagtttcgtcggtggtgctctccttcacaaatgt |
32295777 |
T |
|
| Q |
183 |
cacatttttctctcccttagtgcactcaaaagtcac |
218 |
Q |
| |
|
||||||||| |||||||| |||||||| |||||||| |
|
|
| T |
32295776 |
cacatttttgtctccctttgtgcactctaaagtcac |
32295741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1678 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold1678
Description:
Target: scaffold1678; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 66 - 221
Target Start/End: Original strand, 467 - 619
Alignment:
| Q |
66 |
tgtacatgtaccctttctatttacgggtttcaccatgcaaacctcttcctcatgataaccctgtactttaatgttttagaaaccatctttgtcggtggta |
165 |
Q |
| |
|
|||||||| |||||||| |||||| ||||||| |||||||||||||||| ||| ||| | | || || ||| |||| ||||| || || ||||||| |
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|
| T |
467 |
tgtacatggaccctttccatttac---tttcaccttgcaaacctcttcctcgtgagcaccttcaatttgaaagttgtagataccattttcgtgggtggta |
563 |
T |
|
| Q |
166 |
ctctccttcacaaatgtcacatttttctctcccttagtgcactcaaaagtcacttt |
221 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||| |
|
|
| T |
564 |
gtctccttcaccaatgtcacatttttctcaccctttgtgcactcgaaagtcacttt |
619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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