View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21087_low_67 (Length: 230)
Name: NF21087_low_67
Description: NF21087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21087_low_67 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 13 - 213
Target Start/End: Complemental strand, 50912341 - 50912145
Alignment:
| Q |
13 |
gtgagaagaaatgagtaggcattgatatatagcgggtgggtactctatcggccattcatattgcgctcctattgaacttattgatccttgacagaggaat |
112 |
Q |
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| T |
50912341 |
gtgaaaagaaatgagtaggcattgatatatagcgggt----actctatcggccattcatattgcgctcctattgaacttattgatccttgacagaggcat |
50912246 |
T |
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| Q |
113 |
caaagacaataccatgtgatctcgtgtcatgtgccatcaaagacactgtccctcctttacaacttcacaaatcactcgagcaaacaaatatagaaagatt |
212 |
Q |
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| T |
50912245 |
caaagacaataccatgtgatctcgtgtcatgtgccatcaaagacactgtccctcctttacaacttcacaaatcactcgagcaaacaaatatagaaagatt |
50912146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 73 - 140
Target Start/End: Complemental strand, 38029240 - 38029173
Alignment:
| Q |
73 |
ttgcgctcctattgaacttattgatccttgacagaggaatcaaagacaataccatgtgatctcgtgtc |
140 |
Q |
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| T |
38029240 |
ttgcactcttattgaacttattgatccttgatagaggcatctaagacaatcccatgtgatctcttgtc |
38029173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 38025330 - 38025277
Alignment:
| Q |
89 |
cttattgatccttgacagaggaatcaaagacaataccatgtgatctcgtgtcat |
142 |
Q |
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| T |
38025330 |
cttattgatccttgatagaggcatctaagacaataccatgtgatctcgtctcat |
38025277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 140
Target Start/End: Original strand, 55084451 - 55084518
Alignment:
| Q |
73 |
ttgcgctcctattgaacttattgatccttgacagaggaatcaaagacaataccatgtgatctcgtgtc |
140 |
Q |
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| T |
55084451 |
ttgcactcttattgaacttattgattcttgatagaggcatctaagacaacaccatgtcatctcttgtc |
55084518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 135
Target Start/End: Complemental strand, 38037255 - 38037206
Alignment:
| Q |
86 |
gaacttattgatccttgacagaggaatcaaagacaataccatgtgatctc |
135 |
Q |
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| T |
38037255 |
gaacttattgatccttaatagaggcatctaagacaacaccatgtgatctc |
38037206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 73 - 140
Target Start/End: Complemental strand, 21605231 - 21605164
Alignment:
| Q |
73 |
ttgcgctcctattgaacttattgatccttgacagaggaatcaaagacaataccatgtgatctcgtgtc |
140 |
Q |
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| T |
21605231 |
ttgcactcttattgaacttattgatccttgatagaggcatctaagacaatcccatgtgatctcttgtc |
21605164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 213
Target Start/End: Complemental strand, 21607622 - 21607572
Alignment:
| Q |
163 |
cctcctttacaacttcacaaatcactcgagcaaacaaatatagaaagattt |
213 |
Q |
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| T |
21607622 |
cctccttcacaacttcacaaatcattcaagcaaacaaatttagaaacattt |
21607572 |
T |
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