View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21087_low_68 (Length: 229)

Name: NF21087_low_68
Description: NF21087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21087_low_68
NF21087_low_68
[»] chr1 (3 HSPs)
chr1 (18-207)||(28164437-28164626)
chr1 (18-211)||(28127754-28127948)
chr1 (18-212)||(268432-268626)
[»] chr6 (39 HSPs)
chr6 (22-212)||(26646384-26646574)
chr6 (22-212)||(26752352-26752542)
chr6 (23-207)||(26802352-26802536)
chr6 (18-210)||(27677702-27677894)
chr6 (20-210)||(27593110-27593300)
chr6 (18-210)||(27678853-27679045)
chr6 (18-200)||(27706490-27706672)
chr6 (20-207)||(27611092-27611279)
chr6 (20-207)||(27718469-27718656)
chr6 (20-207)||(27724935-27725122)
chr6 (18-207)||(27698582-27698771)
chr6 (23-207)||(28781049-28781233)
chr6 (18-210)||(26622883-26623075)
chr6 (18-210)||(26728861-26729053)
chr6 (20-207)||(27604795-27604982)
chr6 (23-210)||(31284195-31284382)
chr6 (18-210)||(26142772-26142964)
chr6 (32-207)||(28786188-28786363)
chr6 (32-207)||(28792309-28792484)
chr6 (18-207)||(27229142-27229331)
chr6 (18-210)||(26884070-26884262)
chr6 (18-210)||(25481649-25481841)
chr6 (18-210)||(25538447-25538639)
chr6 (18-210)||(25579626-25579818)
chr6 (18-210)||(26055833-26056025)
chr6 (18-210)||(26075803-26075995)
chr6 (23-198)||(25507002-25507171)
chr6 (18-210)||(26048752-26048944)
chr6 (18-210)||(26069921-26070113)
chr6 (18-150)||(28226917-28227049)
chr6 (20-211)||(28139447-28139638)
chr6 (18-207)||(26655899-26656088)
chr6 (18-207)||(26761870-26762059)
chr6 (18-199)||(27338153-27338334)
chr6 (18-199)||(27398893-27399074)
chr6 (18-210)||(26861523-26861715)
chr6 (18-152)||(28234529-28234663)
chr6 (18-76)||(26823881-26823939)
chr6 (18-198)||(27531285-27531465)
[»] chr8 (1 HSPs)
chr8 (18-200)||(29273858-29274040)
[»] chr4 (5 HSPs)
chr4 (18-211)||(18724160-18724353)
chr4 (18-211)||(18731579-18731772)
chr4 (18-211)||(18679642-18679835)
chr4 (18-211)||(18699475-18699668)
chr4 (18-211)||(18655552-18655745)
[»] scaffold0349 (2 HSPs)
scaffold0349 (18-207)||(3509-3699)
scaffold0349 (27-207)||(14452-14632)
[»] scaffold1254 (1 HSPs)
scaffold1254 (23-207)||(10-194)
[»] scaffold0419 (1 HSPs)
scaffold0419 (23-207)||(7435-7619)
[»] scaffold0277 (2 HSPs)
scaffold0277 (23-207)||(13725-13909)
scaffold0277 (20-207)||(4761-4948)
[»] scaffold0038 (2 HSPs)
scaffold0038 (18-150)||(27415-27547)
scaffold0038 (18-152)||(34690-34824)


Alignment Details
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 28164437 - 28164626
Alignment:
Q  18 atgaagaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaag 117  Q
    ||||||||||||||||||||||||| ||||||||||||||||||  ||||| ||||||| ||||||  ||||||| ||||||||||||||||||||||||    
T  28164437 atgaagaagaggcatagttgatagataacacaggaataaaaattcaagatttttcaatggccttgatgaatgacggtgtgatttcttctcctctctcaag 28164536  T
Q  118 atcacaatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccct 207  Q
    |||||||||||||||||||||||| ||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28164537 atcacaatcatcaatgaatgtgtgaattcccttgtcgtcaagggccttatagagatggccagtgaaaccgtcacgagtgtcactgcccct 28164626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 28127754 - 28127948
Alignment:
Q  18 atgaagaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttctt-ctcctctctcaa 116  Q
    |||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||| |||| | || ||||| |||||||| || ||||||||||||    
T  28127754 atgaagaagaggcatagttggtagaaaatacaggaataaaaattctagattcttcaatggcctttaaaagtgacggtgtgatttttttctcctctctcaa 28127853  T
Q  117 gatcacaatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaag 211  Q
    ||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28127854 gattacaatcatcaatgaatgtgtggattcccttgtcataaagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaag 28127948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 268432 - 268626
Alignment:
Q  18 atgaagaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaag 117  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||| | ||| | | ||| | | ||||||| || ||||| | |||    
T  268432 atgaagaagaggcatagttgatagaaaacacaggaataaaaatcctagactcttcaatggcattgtcgagtgatggtttgatttcatcccctctttgaag 268531  T
Q  118 atcacaatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagt 212  Q
     |||| |||||||||||| ||||||||||||||||||   || |||||||||||||||||| | ||||| ||||||||||||| ||| |||||||    
T  268532 ttcacgatcatcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatggccaataaaaccctcacgagtgtcaccgcctctgaagt 268626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 119; Significance: 6e-61; HSPs: 39)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 22 - 212
Target Start/End: Complemental strand, 26646574 - 26646384
Alignment:
Q  22 agaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatca 121  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||  | ||| | ||||||||| |||||||||| |||||||    
T  26646574 agaagaggcatagttgatagaaaacacaggaataaaaatcctagattcttcaatggccttgatgagtgatggtgtgatttcatctcctctcttaagatca 26646475  T
Q  122 caatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagt 212  Q
    |||||||||||||| ||||| ||||||||||||   || |||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  26646474 caatcatcaatgaaggtgtgaattcccttgtcagtaagagccttgtagagatgtccagtaaaaccgtcacgagtgtcactgcccctgaagt 26646384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 22 - 212
Target Start/End: Complemental strand, 26752542 - 26752352
Alignment:
Q  22 agaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatca 121  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||  | ||| | ||||||||| |||||||||| |||||||    
T  26752542 agaagaggcatagttgatagaaaacacaggaataaaaatcctagattcttcaatggccttgatgagtgatggtgtgatttcatctcctctcttaagatca 26752443  T
Q  122 caatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagt 212  Q
    |||||||||||||| ||||| ||||||||||||   || |||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  26752442 caatcatcaatgaaggtgtgaattcccttgtcagtaagagccttgtagagatgtccagtaaaaccgtcacgagtgtcactgcccctgaagt 26752352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 23 - 207
Target Start/End: Complemental strand, 26802536 - 26802352
Alignment:
Q  23 gaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatcac 122  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||  | ||| | ||||||||| |||||||| | |||||||     
T  26802536 gaagaggcatagttgatagaaaacacaggaataaaaattctagattcttcaatggccttgatgagtgatggtgtgatttcatctcctctttgaagatcat 26802437  T
Q  123 aatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccct 207  Q
      ||||||||||| || |||||||||||||||   || ||||||||||||| ||| || |||||||  ||||||||| |||||||    
T  26802436 tgtcatcaatgaaggtatggattcccttgtcaataagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccct 26802352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 27677702 - 27677894
Alignment:
Q  18 atgaagaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaag 117  Q
    ||||||||||||||||||||||||||||||||| |||||||||  |||| ||||||||| |||||| || ||| | ||||||||| || ||||| | |||    
T  27677702 atgaagaagaggcatagttgatagaaaacacagcaataaaaatcctagactcttcaatggccttgagaagtgatggtgtgatttcatcccctctttgaag 27677801  T
Q  118 atcacaatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaa 210  Q
     |||  ||  |||||||| |||||||||||||||||||| || ||||||||||||| ||| ||||||||||  ||||||||||| || |||||    
T  27677802 ttcatgattgtcaatgaaggtgtggattcccttgtcatcaagagccttgtagagattgccggtgaaaccgtaccgagtgtcacttcctctgaa 27677894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 20 - 210
Target Start/End: Original strand, 27593110 - 27593300
Alignment:
Q  20 gaagaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagat 119  Q
    |||||||||||||||||||||||||||||||||||||||||  |||| ||||||||| |||||| || ||| | ||||||||| | |||||| | ||||     
T  27593110 gaagaagaggcatagttgatagaaaacacaggaataaaaatcctagactcttcaatggccttgagaagtgatggtgtgatttcatttcctctttgaagac 27593209  T
Q  120 cacaatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaa 210  Q
    ||   ||||||||||| |||| |||||||||||||   || ||||||||||||| ||| ||||||||||  ||||||||||| || |||||    
T  27593210 cattgtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagattgccggtgaaaccgtaccgagtgtcacttcctctgaa 27593300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 27679045 - 27678853
Alignment:
Q  18 atgaagaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaag 117  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||| |||||| || ||| | ||||||||| |||||||| | |||    
T  27679045 atgaagaagaggcatagttgatagaaaacacaggaataaaaatcctagactcttcaatggccttgagaagtgatggtgtgatttcatctcctctttgaag 27678946  T
Q  118 atcacaatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaa 210  Q
    | ||   | ||||||||| |||| |||||||||||||   || |||||||||||||  || ||||||||||  ||||||||||| || |||||    
T  27678945 accattcttatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagattcccggtgaaaccgtaccgagtgtcacttcctctgaa 27678853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 27706490 - 27706672
Alignment:
Q  18 atgaagaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaag 117  Q
    ||||||||||||||||| |||||||||||||||||||||||||  |||| ||||||||| |||||| || ||| | ||||||||| || | ||| | |||    
T  27706490 atgaagaagaggcataggtgatagaaaacacaggaataaaaatcctagactcttcaatggccttgagaagtgatggtgtgatttcatcccttctttgaag 27706589  T
Q  118 atcacaatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcac 200  Q
     |||  ||  |||||||| |||||||||||||||||||| |  ||||||||||||| ||| ||||||||||  ||||||||||    
T  27706590 ttcatgattgtcaatgaaggtgtggattcccttgtcatcaaaagccttgtagagattgcctgtgaaaccgtaccgagtgtcac 27706672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 27611092 - 27611279
Alignment:
Q  20 gaagaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagat 119  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||| |||||| ||||||  | ||| | ||||||||| ||||||||   |||||    
T  27611092 gaagaagaggcatagttgatagaaaacacaggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctcttggaagat 27611191  T
Q  120 cacaatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccct 207  Q
    ||   ||||||||||| || |||||||||||||||   || |||||||||||||  || || |||||||  ||||||||| |||||||    
T  27611192 cattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtggcgagtgtcagtgcccct 27611279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 27718469 - 27718656
Alignment:
Q  20 gaagaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagat 119  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||| |||||| ||||||  | ||| | ||||||||| |||||||| | |||||    
T  27718469 gaagaagaggcatagttgatagaaaacacaggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctctttgaagat 27718568  T
Q  120 cacaatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccct 207  Q
    ||   ||||||||||| || |||||||||||||||   || |||||||||||||  || || |||| ||  ||||||||| |||||||    
T  27718569 cattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccggtaaaactgtgccgagtgtcagtgcccct 27718656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 27724935 - 27725122
Alignment:
Q  20 gaagaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagat 119  Q
    |||||| ||||||||||||||||||||||||||||||||||  ||||||| |||||| ||||||  | ||| | ||||||||| |||||||| | |||||    
T  27724935 gaagaataggcatagttgatagaaaacacaggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctctttgaagat 27725034  T
Q  120 cacaatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccct 207  Q
    ||   ||||||||||| || |||||||||||||||   || |||||||||||||  || || |||||||  ||||||||| |||||||    
T  27725035 cattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtgccgagtgtcagtgcccct 27725122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 27698582 - 27698771
Alignment:
Q  18 atgaagaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaag 117  Q
    |||||||||| |||||||||| |||||||||||||||||||||  ||||||| |||||| ||||||  | ||| | ||||||||| |||||||| | |||    
T  27698582 atgaagaagatgcatagttgagagaaaacacaggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctctttgaag 27698681  T
Q  118 atcacaatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccct 207  Q
    ||||   ||||||||||| || |||||||||||||||   || |||||||||||||  || || |||||||  ||||||||| |||||||    
T  27698682 atcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtgccgagtgtcagtgcccct 27698771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 23 - 207
Target Start/End: Complemental strand, 28781233 - 28781049
Alignment:
Q  23 gaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatcac 122  Q
    |||| |||||||||||||||||||||||||||||||||  |||||||||| ||| ||||||  | ||| | ||||||||| |||||||| | |||||||     
T  28781233 gaagtggcatagttgatagaaaacacaggaataaaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcat 28781134  T
Q  123 aatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccct 207  Q
      ||||||||||| || | |||||||||||||   || ||||||||||||| ||| || |||||||  ||||||||| |||||||    
T  28781133 tgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagattgccggtaaaaccgtggcgagtgtcagtgcccct 28781049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 26623075 - 26622883
Alignment:
Q  18 atgaagaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaag 117  Q
    |||||||| | |||||||||  |||||||||||||||||||||  |||| ||||| ||  | ||| ||| ||| | | ||||||| || ||||| | |||    
T  26623075 atgaagaatatgcatagttgggagaaaacacaggaataaaaatcctagactcttcgatagcattgtcaagtgatggtttgatttcgtcccctctttgaag 26622976  T
Q  118 atcacaatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaa 210  Q
     |||| |||||||||||| ||||||||||||||||||   || |||||||||||||  |||||||||||||  |||||||||||||| |||||    
T  26622975 ttcacgatcatcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatttccagtgaaaccgtaccgagtgtcactgcctctgaa 26622883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 26729053 - 26728861
Alignment:
Q  18 atgaagaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaag 117  Q
    |||||||| | |||||||||  |||||||||||||||||||||  |||| ||||| ||  | ||| ||| ||| | | ||||||| || ||||| | |||    
T  26729053 atgaagaatatgcatagttgggagaaaacacaggaataaaaatcctagactcttcgatagcattgtcaagtgatggtttgatttcgtcccctctttgaag 26728954  T
Q  118 atcacaatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaa 210  Q
     |||| |||||||||||| ||||||||||||||||||   || |||||||||||||  |||||||||||||  |||||||||||||| |||||    
T  26728953 ttcacgatcatcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatttccagtgaaaccgtaccgagtgtcactgcctctgaa 26728861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 27604795 - 27604982
Alignment:
Q  20 gaagaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagat 119  Q
    |||||||||||||| ||||||||||||||||||||||||||  | ||||| |||||| |||||| || ||  | ||||||||| ||||||||   |||||    
T  27604795 gaagaagaggcatatttgatagaaaacacaggaataaaaatcctggattcatcaatggccttgagaagtgctggtgtgatttcatctcctcttcgaagat 27604894  T
Q  120 cacaatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccct 207  Q
    ||   ||||||||||| || || ||||||||||||   || ||||||||||||| ||| || |||||||  ||||||||| |||||||    
T  27604895 cattttcatcaatgaaggtatgaattcccttgtcagtaagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccct 27604982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 210
Target Start/End: Complemental strand, 31284382 - 31284195
Alignment:
Q  23 gaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatcac 122  Q
    |||||||||||||||  ||||||||| || ||||||||  |||| ||||||||| | ||| | | ||| | ||||||||| || ||||| | ||| ||||    
T  31284382 gaagaggcatagttggcagaaaacacggggataaaaatcctagactcttcaatggcattgtcgagtgatggtgtgatttcatcccctctttgaagttcac 31284283  T
Q  123 aatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaa 210  Q
     |||||||||||| ||||||||||||||||||   || ||||||||||||| ||| |||||||| |  ||||||||||| ||||||||    
T  31284282 tatcatcaatgaaggtgtggattcccttgtcagtaagagccttgtagagattgccggtgaaaccataccgagtgtcacttcccctgaa 31284195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 26142964 - 26142772
Alignment:
Q  18 atgaagaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaag 117  Q
    |||||||||| |||||||||  |||||| |  |||||||||||  |||||||||||||| ||||||||| ||| | ||||||||| |||||||| |||||    
T  26142964 atgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcaatggccttgacaagtgatggtgtgatttcatctcctctttcaag 26142865  T
Q  118 atcacaatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaa 210  Q
    ||||  |||||||||||| ||  | |||||||||||| | || ||||| |||||||  || || ||   ||  ||||||||||||||||||||    
T  26142864 atcattatcatcaatgaaagtacgaattcccttgtcaacaagagccttatagagattaccggtaaatttgttgcgagtgtcactgcccctgaa 26142772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 32 - 207
Target Start/End: Complemental strand, 28786363 - 28786188
Alignment:
Q  32 tagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatcacaatcatcaa 131  Q
    |||||||||||||||||||||||||||||  |||||||||| ||| ||||||  | ||| | ||||||||| |||||||| | |||||||   |||||||    
T  28786363 tagttgatagaaaacacaggaataaaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaa 28786264  T
Q  132 tgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccct 207  Q
    |||| || | |||||||||||||   || |||||||||||||  || || |||||||  ||||||||| |||||||    
T  28786263 tgaaggttttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtggcgagtgtcagtgcccct 28786188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 32 - 207
Target Start/End: Complemental strand, 28792484 - 28792309
Alignment:
Q  32 tagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatcacaatcatcaa 131  Q
    |||||||||||||||||||||||||||||  |||||||||| ||| ||||||  | ||| | ||||||||| |||||||| | |||||||   |||||||    
T  28792484 tagttgatagaaaacacaggaataaaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaa 28792385  T
Q  132 tgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccct 207  Q
    |||| || | |||||||||||||   || |||||||||||||  || || |||||||  ||||||||| |||||||    
T  28792384 tgaaggttttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtggcgagtgtcagtgcccct 28792309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 27229331 - 27229142
Alignment:
Q  18 atgaagaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaag 117  Q
    |||||||||| |||||||||  |||||| |  |||||||||||   |||||| |||||| ||||||| | ||| | ||||||||| |||||||| | |||    
T  27229331 atgaagaagatgcatagttggcagaaaatatgggaataaaaatccgagattcgtcaatggccttgacgagtgatggtgtgatttcgtctcctctttgaag 27229232  T
Q  118 atcacaatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccct 207  Q
    ||||   ||||||||||| || |||||||||||||||   || ||||||||||||| ||| || |||||||  ||||||||| |||||||    
T  27229231 atcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccggtaaaaccgtgccgagtgtcagtgcccct 27229142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 26884262 - 26884070
Alignment:
Q  18 atgaagaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaag 117  Q
    |||||||||| ||||||||| ||||||| |  |||||||||||| |||||||||||||| ||||||  | ||| | |||||||||   ||||||   |||    
T  26884262 atgaagaagatgcatagttggtagaaaatattggaataaaaattctagattcttcaatggccttgatgagtgatggtgtgatttcgcttcctcttggaag 26884163  T
Q  118 atcacaatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaa 210  Q
    || |  |||||||||||| |||||||||||||||| |   || |||||||||||||  ||||||||||| |  ||||||||||| || |||||    
T  26884162 atgattatcatcaatgaaggtgtggattcccttgttagtaagagccttgtagagatttccagtgaaaccataccgagtgtcacttcctctgaa 26884070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 25481841 - 25481649
Alignment:
Q  18 atgaagaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaag 117  Q
    |||||||||| |||||||||  |||||| |  |||||| ||||  |||||||||||||| ||||||||| ||| | ||||||||| |||||||| | |||    
T  25481841 atgaagaagatgcatagttggcagaaaatatgggaatacaaatcctagattcttcaatggccttgacaagtgatggtgtgatttcatctcctctttgaag 25481742  T
Q  118 atcacaatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaa 210  Q
    ||||   ||||||||||| ||  | |||||||||||| | || ||||| |||||||  || || |||  ||  ||||||||||||||||||||    
T  25481741 atcattttcatcaatgaaagtacgaattcccttgtcaacaagagccttatagagattaccggtaaaattgttgcgagtgtcactgcccctgaa 25481649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 25538639 - 25538447
Alignment:
Q  18 atgaagaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaag 117  Q
    |||||||||| |||||||||  |||||| |  |||||||||||| |||||||||| ||| ||||||||| ||| | ||||||||| |||||||| |||||    
T  25538639 atgaagaagatgcatagttggcagaaaatatgggaataaaaattctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaag 25538540  T
Q  118 atcacaatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaa 210  Q
    ||||  |||||| ||||| ||    |||||||||||| | || ||||| |||||||  || || ||   ||  ||||||||||||||||||||    
T  25538539 atcattatcatctatgaaagtactaattcccttgtcaacaagagccttatagagattaccggtaaatttgttgcgagtgtcactgcccctgaa 25538447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 25579818 - 25579626
Alignment:
Q  18 atgaagaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaag 117  Q
    |||||||||| |||||||||  |||||| |  |||||||||||  |||||||||||||| ||||||||| ||| | ||||||||| |||||||| | |||    
T  25579818 atgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcaatggccttgacaagtgatggtgtgatttcatctcctctttgaag 25579719  T
Q  118 atcacaatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaa 210  Q
    ||||  |||||||| ||| ||  | |||||||||||| | || ||||| |||||||  || || |||  ||  |||||||||||||| |||||    
T  25579718 atcattatcatcaaagaaggtacgaattcccttgtcaacaagagccttatagagattaccggtaaaagtgttgcgagtgtcactgcctctgaa 25579626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 26056025 - 26055833
Alignment:
Q  18 atgaagaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaag 117  Q
    |||||||||| |||||||||  |||||| |  |||||||||||   ||||||||| ||| ||||||||| ||| ||||||||||| |||||||| | |||    
T  26056025 atgaagaagatgcatagttggcagaaaatatgggaataaaaatcccagattcttcgatggccttgacaagtgatgatgtgatttcatctcctctttgaag 26055926  T
Q  118 atcacaatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaa 210  Q
    ||||   ||||||||||| || |  |||||||||||| | || ||||| |||||||  || || |||  ||  ||||||||||||||||||||    
T  26055925 atcattttcatcaatgaaagtattaattcccttgtcaacaagagccttatagagattaccggtaaaattgttgcgagtgtcactgcccctgaa 26055833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 26075995 - 26075803
Alignment:
Q  18 atgaagaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaag 117  Q
    |||||||||| |||||||||  |||||| |  |||||||||||   ||||||||| ||| ||||||||| ||| ||||||||||| |||||||| | |||    
T  26075995 atgaagaagatgcatagttggcagaaaatatgggaataaaaatcccagattcttcgatggccttgacaagtgatgatgtgatttcatctcctctttgaag 26075896  T
Q  118 atcacaatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaa 210  Q
    ||||   ||||||||||| || |  |||||||||||| | || ||||| |||||||  || || |||  ||  ||||||||||||||||||||    
T  26075895 atcattttcatcaatgaaagtattaattcccttgtcaacaagagccttatagagattaccggtaaaattgttgcgagtgtcactgcccctgaa 26075803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 198
Target Start/End: Original strand, 25507002 - 25507171
Alignment:
Q  23 gaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatcac 122  Q
    ||||||||||||||||||||||  || |||||||||||  |||||||||||||| |  |||| | ||| | ||||||||| |||||||| |  |||||||    
T  25507002 gaagaggcatagttgatagaaagaaccggaataaaaatcctagattcttcaatggcgatgacgactgatggtgtgatttcatctcctcttttcagatcac 25507101  T
Q  123 aatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtc 198  Q
    |||||||||      |||| |||||||||||||  || ||| |||||||||||| ||| |||| |  |||||||||    
T  25507102 aatcatcaa------tgtgaattcccttgtcatatagagccgtgtagagatggctagtaaaacggctacgagtgtc 25507171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 26048944 - 26048752
Alignment:
Q  18 atgaagaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaag 117  Q
    |||||||||| |||||||||  |||||| |  |||||||||||  |||||||||| ||| ||||||||| |   | ||||||||| |||||||| |||||    
T  26048944 atgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttccatggccttgacaagtttgggtgtgatttcatctcctctttcaag 26048845  T
Q  118 atcacaatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaa 210  Q
    ||||  |||||||||||| ||    ||||||||||||  ||| ||||| |||||||  || || |||  ||  ||||||||||||||||||||    
T  26048844 atcattatcatcaatgaaagtacaaattcccttgtcaatgagagccttatagagattaccggtaaaattgttgcgagtgtcactgcccctgaa 26048752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 26070113 - 26069921
Alignment:
Q  18 atgaagaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaag 117  Q
    |||||||||| |||||||||  |||||| |  |||||||||||  |||||||||| ||| ||||||||| |   | ||||||||| |||||||| |||||    
T  26070113 atgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttccatggccttgacaagtttgggtgtgatttcatctcctctttcaag 26070014  T
Q  118 atcacaatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaa 210  Q
    ||||  |||||||||||| ||    ||||||||||||  ||| ||||| |||||||  || || |||  ||  ||||||||||||||||||||    
T  26070013 atcattatcatcaatgaaagtacaaattcccttgtcaatgagagccttatagagattaccggtaaaattgttgcgagtgtcactgcccctgaa 26069921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 28227049 - 28226917
Alignment:
Q  18 atgaagaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaag 117  Q
    |||||||||| ||||| |||||||| || |||||||| |||||  ||||||||||||||||||||| || ||| ||||| ||||| || ||||  | |||    
T  28227049 atgaagaagaagcataattgatagacaagacaggaatgaaaatcctagattcttcaatgaccttgaaaagtgatgatgttatttcatcacctccttgaag 28226950  T
Q  118 atcacaatcatcaatgaatgtgtggattccctt 150  Q
     || | |||||||| ||||||||| ||||||||    
T  28226949 ctctctatcatcaaagaatgtgtgaattccctt 28226917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 211
Target Start/End: Complemental strand, 28139638 - 28139447
Alignment:
Q  20 gaagaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagat 119  Q
    |||||||||||||||||||| ||||||||||| || |||||  |||||||||||||| | || || | ||||| ||  ||||| || ||||  | ||| |    
T  28139638 gaagaagaggcatagttgatggaaaacacagggatgaaaatcctagattcttcaatggcttttacgagtgacggtgatatttcgtcacctccttgaagct 28139539  T
Q  120 cacaatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaag 211  Q
    | | ||||||||| || |||||||||||   ||||   || || ||||||||||  ||||||||||||  ||||||||||||||| ||||||    
T  28139538 ccctatcatcaataaaagtgtggattccacagtcacgaagagctttgtagagatttccagtgaaaccgaaacgagtgtcactgcctctgaag 28139447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 26656088 - 26655899
Alignment:
Q  18 atgaagaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaag 117  Q
    |||||||||| |||||||||  |||||| |  |||||||||||  | |||||||||||| |||| || | ||| | ||||||||| ||||||||   |||    
T  26656088 atgaagaagatgcatagttggcagaaaatatgggaataaaaatcctggattcttcaatggccttaacgagtgatggtgtgatttcatctcctctgagaag 26655989  T
Q  118 atcacaatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccct 207  Q
    ||||   ||||||||||| || ||||||||||| |||   || ||||||||||||| ||| || |||||||  || |||||| |||||||    
T  26655988 atcattgtcatcaatgaaagtatggattcccttatcaataagagccttgtagagattgccggtaaaaccgtgccgggtgtcaatgcccct 26655899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 26762059 - 26761870
Alignment:
Q  18 atgaagaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaag 117  Q
    |||||||||| |||||||||  |||||| |  |||||||||||  | |||||||||||| |||| || | ||| | ||||||||| ||||||||   |||    
T  26762059 atgaagaagatgcatagttggcagaaaatatgggaataaaaatcctggattcttcaatggccttaacgagtgatggtgtgatttcatctcctctgagaag 26761960  T
Q  118 atcacaatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccct 207  Q
    ||||   ||||||||||| || ||||||||||| |||   || ||||||||||||| ||| || |||||||  || |||||| |||||||    
T  26761959 atcattgtcatcaatgaaagtatggattcccttatcaataagagccttgtagagattgccggtaaaaccgtgccgggtgtcaatgcccct 26761870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 27338153 - 27338334
Alignment:
Q  18 atgaagaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaag 117  Q
    |||||||||| ||||||||   |||||| |  ||||| |||||  |||| ||||||||| ||||||||| ||| | |||| |||| |||||||| |||||    
T  27338153 atgaagaagatgcatagtttgcagaaaatatgggaatcaaaatcctagactcttcaatggccttgacaagtgatggtgtgctttcatctcctctttcaag 27338252  T
Q  118 atcacaatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtca 199  Q
    |||    ||||||||||| || | |||||||||||||   || ||||||||||||| ||| || ||||||| | ||||||||    
T  27338253 atcgttgtcatcaatgaaggttttgattcccttgtcaataagagccttgtagagattgccggtaaaaccgtaaagagtgtca 27338334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 27398893 - 27399074
Alignment:
Q  18 atgaagaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaag 117  Q
    |||||||||| ||||||||   |||||| |  ||||| |||||  |||| ||||||||| ||||||||| ||| | |||| |||| |||||||| |||||    
T  27398893 atgaagaagatgcatagtttgcagaaaatatgggaatcaaaatcctagactcttcaatggccttgacaagtgatggtgtgctttcatctcctctttcaag 27398992  T
Q  118 atcacaatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtca 199  Q
    |||    ||||||||||| || | |||||||||||||   || ||||||||||||| ||| || ||||||| | ||||||||    
T  27398993 atcgttgtcatcaatgaaggttttgattcccttgtcaataagagccttgtagagattgccggtaaaaccgtaaagagtgtca 27399074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 26861715 - 26861523
Alignment:
Q  18 atgaagaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaag 117  Q
    |||| |||||||||||||||  ||||||||||||||| |||||| |||| ||||||||| | ||| | | |||   | ||||||| || ||||| | |||    
T  26861715 atgacgaagaggcatagttggcagaaaacacaggaatgaaaattctagactcttcaatggcattgtcgagtgatcttttgatttcatcccctctttgaag 26861616  T
Q  118 atcacaatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaa 210  Q
     |||| |||||| ||||| ||||| ||||||||||||   || |||||||||||||  || || ||||| |  ||||||||||| || |||||    
T  26861615 ttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtagagattaccggtaaaaccataccgagtgtcacttcctctgaa 26861523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 28234663 - 28234529
Alignment:
Q  18 atgaagaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaag 117  Q
    |||||||||| ||||| |||||||| || |||||||| |||||  |||| ||||||||| |||||| || ||| | ||| ||||| |||||||  | |||    
T  28234663 atgaagaagaagcataattgatagacaagacaggaatgaaaatcctagactcttcaatggccttgaaaagtgatggtgttatttcatctcctccttgaag 28234564  T
Q  118 atcacaatcatcaatgaatgtgtggattcccttgt 152  Q
     || |  ||||||||||| ||||||||||||||||    
T  28234563 ctccctgtcatcaatgaaggtgtggattcccttgt 28234529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 26823939 - 26823881
Alignment:
Q  18 atgaagaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatg 76  Q
    ||||||||||||||||||||  |||||||||||||||||||||  |||| |||||||||    
T  26823939 atgaagaagaggcatagttggcagaaaacacaggaataaaaatcctagactcttcaatg 26823881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 27531285 - 27531465
Alignment:
Q  18 atgaagaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaag 117  Q
    |||||||||| ||||||||   |||||| || |||||||||||  |||||| ||||||| | ||    | ||| | ||||||||| |||||||| | |||    
T  27531285 atgaagaagatgcatagttttcagaaaatacgggaataaaaatcctagatttttcaatggcattttttagtgatggtgtgatttcatctcctctttgaag 27531384  T
Q  118 atcacaatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtc 198  Q
    ||||   ||||||||||| || | |||||||||||||   || |||||||||||||  || || |||||||  ||||||||    
T  27531385 atcattgtcatcaatgaaggtatagattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtggcgagtgtc 27531465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 29273858 - 29274040
Alignment:
Q  18 atgaagaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaag 117  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||| | | ||| ||| ||||||| || ||||| | |||    
T  29273858 atgaagaagaggcatagttgatagaaaacacaggaataaaaattctagactcttcaatgacattgtcgagtgatgatttgatttcatcccctctttgaag 29273957  T
Q  118 atcacaatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcac 200  Q
     |||| |||||||||||| ||||||||||||||||||   || | |||||||||||||||| | |||||||||||||||||||    
T  29273958 ttcacgatcatcaatgaaggtgtggattcccttgtcagtaagagtcttgtagagatggccaataaaaccgtcacgagtgtcac 29274040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 18724160 - 18724353
Alignment:
Q  18 atgaagaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaag 117  Q
    ||||||||||||||||||||||||||||||||||||| || ||  |||| ||||||||| | ||| | | ||| | | ||||||| || ||||| |  ||    
T  18724160 atgaagaagaggcatagttgatagaaaacacaggaatgaagatcctagactcttcaatggcattgtcgagtgatggtttgatttcatcccctctttgcag 18724259  T
Q  118 atcacaatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaag 211  Q
     ||||  ||||||||||| ||||||||||||||||||   || |||||||||||||| ||||| ||||||| ||||||||||||||||||||||    
T  18724260 gtcacggtcatcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatgaccagtaaaaccgttacgagtgtcactgcccctgaag 18724353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 18731579 - 18731772
Alignment:
Q  18 atgaagaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaag 117  Q
    ||||||||||||||||||||||||||||||||||||| || ||  |||| ||||||||| | ||| | | ||| | | ||||||| || ||||| |  ||    
T  18731579 atgaagaagaggcatagttgatagaaaacacaggaatgaagatcctagactcttcaatggcattgtcgagtgatggtttgatttcatcccctctttgcag 18731678  T
Q  118 atcacaatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaag 211  Q
     ||||  ||||||||||| ||||||||||||||||||   || ||  |||||||||||||||| ||||||||||||||||||||||||||||||    
T  18731679 gtcacggtcatcaatgaaggtgtggattcccttgtcagtaagagctctgtagagatggccagtaaaaccgtcacgagtgtcactgcccctgaag 18731772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 18679642 - 18679835
Alignment:
Q  18 atgaagaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaag 117  Q
    ||||||||||||||||||||||||||||||||||||| || ||  |||| ||||||||| | ||| | | ||| | | ||||||| || ||||| |  ||    
T  18679642 atgaagaagaggcatagttgatagaaaacacaggaatgaagatcctagactcttcaatggcattgtcgagtgatggtttgatttcatcccctctttgcag 18679741  T
Q  118 atcacaatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaag 211  Q
     ||||  ||||||||||| ||||||||||| ||||||   || |||||||||||||| ||||| ||||||| ||||||||||||||||||||||    
T  18679742 gtcacggtcatcaatgaaggtgtggattcctttgtcagtaagagccttgtagagatgaccagtaaaaccgttacgagtgtcactgcccctgaag 18679835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 18699475 - 18699668
Alignment:
Q  18 atgaagaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaag 117  Q
    ||||||||||||||||||||||||||||||||||||| || ||  |||| ||||||||| | ||| | | ||| | | ||||||| || || || |  ||    
T  18699475 atgaagaagaggcatagttgatagaaaacacaggaatgaagatcctagactcttcaatggcattgtcgagtgatggtttgatttcatccccactttgcag 18699574  T
Q  118 atcacaatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaag 211  Q
     ||||  ||||||||||| ||||||||||||||||||   || || ||||||||||||||||| |||||||||||||||||| |||||||||||    
T  18699575 gtcacggtcatcaatgaaggtgtggattcccttgtcagtaagagctttgtagagatggccagtaaaaccgtcacgagtgtcagtgcccctgaag 18699668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 18655552 - 18655745
Alignment:
Q  18 atgaagaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaag 117  Q
    |||||||||||||||||||||||||||||||||||||||| ||  |||| |||| |||| | ||| | | ||| | | ||||||| || || || |  ||    
T  18655552 atgaagaagaggcatagttgatagaaaacacaggaataaagatcctagactcttgaatggcattgtcgagtgatggtttgatttcatccccactttgcag 18655651  T
Q  118 atcacaatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaag 211  Q
     ||||  ||||||||||| ||||||||||||||||||   || || ||||||||||| ||||| ||||||| ||||||||||||||||||||||    
T  18655652 ctcacggtcatcaatgaaggtgtggattcccttgtcagtaagagctttgtagagatgcccagtaaaaccgttacgagtgtcactgcccctgaag 18655745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 3509 - 3699
Alignment:
Q  18 atgaagaagaggcatag-ttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaa 116  Q
    ||||||||||||||||| ||||||||||||||||||||||||||  ||||||| |||||| ||||||  | ||| | ||||||||| |||||||| | ||    
T  3509 atgaagaagaggcataggttgatagaaaacacaggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctctttgaa 3608  T
Q  117 gatcacaatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccct 207  Q
    |||||   ||||||||||| || |||||||||||||||   || |||||||||||||  || || |||||||  ||||||||| |||||||    
T  3609 gatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtgccgagtgtcagtgcccct 3699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 27 - 207
Target Start/End: Original strand, 14452 - 14632
Alignment:
Q  27 aggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatcacaatc 126  Q
    ||||||||||||||||||||||||||||||||||  ||||||| |||||| ||||||  | ||| | ||||||||| |||||||| | |||||||   ||    
T  14452 aggcatagttgatagaaaacacaggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtc 14551  T
Q  127 atcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccct 207  Q
    ||||||||| || |||||||||||||||   || |||||||||||||  || || |||||||  ||||||||| |||||||    
T  14552 atcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtgccgagtgtcagtgcccct 14632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 207
Target Start/End: Original strand, 10 - 194
Alignment:
Q  23 gaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatcac 122  Q
    |||| ||| |||||||||||||||||||||||||||||  |||||||||| ||| ||||||  | ||| | ||||||||| |||||||| | |||||||     
T  10 gaagtggcgtagttgatagaaaacacaggaataaaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcat 109  T
Q  123 aatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccct 207  Q
      ||||||||||| || | |||||||||||||   || ||||||||||||| ||| || |||||||  ||||||||| |||||||    
T  110 tgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagattgccggtaaaaccgtggcgagtgtcagtgcccct 194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 207
Target Start/End: Complemental strand, 7619 - 7435
Alignment:
Q  23 gaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatcac 122  Q
    |||| ||| |||||||||||||||||||||||||||||  |||||||||| ||| ||||||  | ||| | ||||||||| |||||||| | |||||||     
T  7619 gaagtggcgtagttgatagaaaacacaggaataaaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcat 7520  T
Q  123 aatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccct 207  Q
      ||||||||||| || | |||||||||||||   || ||||||||||||| ||| || |||||||  ||||||||| |||||||    
T  7519 tgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagattgccggtaaaaccgtggcgagtgtcagtgcccct 7435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 207
Target Start/End: Original strand, 13725 - 13909
Alignment:
Q  23 gaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagatcac 122  Q
    |||| ||| |||||||||||||||||||||||||||||  |||||||||| ||| ||||||  | ||| | ||||||||| |||||||| | |||||||     
T  13725 gaagtggcgtagttgatagaaaacacaggaataaaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcat 13824  T
Q  123 aatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccct 207  Q
      ||||||||||| || | |||||||||||||   || ||||||||||||| ||| || |||||||  ||||||||| |||||||    
T  13825 tgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagattgccggtaaaaccgtggcgagtgtcagtgcccct 13909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 4761 - 4948
Alignment:
Q  20 gaagaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaagat 119  Q
    |||||| ||||||||  ||||||||||||||||||||||||  ||||||| |||||| |||||   |  || | ||||||||| |||||||| | |||||    
T  4761 gaagaaaaggcatagaagatagaaaacacaggaataaaaatcctagattcatcaatggccttgcggagggatggtgtgatttcatctcctctttgaagat 4860  T
Q  120 cacaatcatcaatgaatgtgtggattcccttgtcatcgagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccct 207  Q
    ||   ||||||||||| || | |||||||||||||   || |||||||||||||  || || |||||||  ||||||||| |||||||    
T  4861 cattgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtggcgagtgtcaatgcccct 4948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 27547 - 27415
Alignment:
Q  18 atgaagaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaag 117  Q
    |||||||||| ||||| |||||||| || |||||||| |||||  ||||||||||||||||||||| || ||| ||||| ||||| || ||||  | |||    
T  27547 atgaagaagaagcataattgatagacaagacaggaatgaaaatcctagattcttcaatgaccttgaaaagtgatgatgttatttcatcacctccttgaag 27448  T
Q  118 atcacaatcatcaatgaatgtgtggattccctt 150  Q
     || | |||||||| ||||||||| ||||||||    
T  27447 ctctctatcatcaaagaatgtgtgaattccctt 27415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 34824 - 34690
Alignment:
Q  18 atgaagaagaggcatagttgatagaaaacacaggaataaaaattttagattcttcaatgaccttgacaaatgacgatgtgatttcttctcctctctcaag 117  Q
    |||||||||| ||||| |||||||| || |||||||| |||||  |||| ||||||||| |||||| || ||| | ||| ||||| |||||||  | |||    
T  34824 atgaagaagaagcataattgatagacaagacaggaatgaaaatcctagactcttcaatggccttgaaaagtgatggtgttatttcatctcctccttgaag 34725  T
Q  118 atcacaatcatcaatgaatgtgtggattcccttgt 152  Q
     || |  ||||||||||| ||||||||||||||||    
T  34724 ctccctgtcatcaatgaaggtgtggattcccttgt 34690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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