View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21087_low_69 (Length: 228)
Name: NF21087_low_69
Description: NF21087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21087_low_69 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 3 - 213
Target Start/End: Complemental strand, 45597230 - 45597021
Alignment:
| Q |
3 |
tattttgactcctttagttttgacagttgaatgattcaagtggggatccagactatgagaaactatggaagccacctccaaatcatgggtttcaaccctg |
102 |
Q |
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| T |
45597230 |
tattttgactcctttagttttgacagttgaatgattcaagtggggatccagactatgagaaactatggaagccacctccaaatcatgggtttctaccctg |
45597131 |
T |
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| Q |
103 |
tacaaagcctactcctaactacactagtaagaaactttaaaccttatgttgcaatttgtaagtggtgtatttgtgtttattgtacttaaatgaaatgtta |
202 |
Q |
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| T |
45597130 |
tacaaagcctactcctaactacactagtaagaaacttttaactttatgttgcaatttgtaa-tcgtgtgtttgtgtttattgtacttaaatgaaatgtta |
45597032 |
T |
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| Q |
203 |
aatgtttctcc |
213 |
Q |
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| T |
45597031 |
aatgtttctcc |
45597021 |
T |
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Back To:
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Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 27 - 93
Target Start/End: Complemental strand, 13510208 - 13510142
Alignment:
| Q |
27 |
agttgaatgattcaagtggggatccagactatgagaaactatggaagccacctccaaatcatgggtt |
93 |
Q |
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| T |
13510208 |
agttgaatgattcaaatggggatccagactatgagaaactgtggaagccacctccaaatcatgggtt |
13510142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 27 - 93
Target Start/End: Complemental strand, 42794375 - 42794309
Alignment:
| Q |
27 |
agttgaatgattcaagtggggatccagactatgagaaactatggaagccacctccaaatcatgggtt |
93 |
Q |
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| T |
42794375 |
agttgaatgattcaaatggggatccagactatgagaaactgtagaagccacctccaaatcatgggtt |
42794309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 27 - 93
Target Start/End: Complemental strand, 19398172 - 19398106
Alignment:
| Q |
27 |
agttgaatgattcaagtggggatccagactatgagaaactatggaagccacctccaaatcatgggtt |
93 |
Q |
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| T |
19398172 |
agttgaatgattcaaatggggatccagactatgataaactgtagaagccacctccaaatcatgggtt |
19398106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 139
Target Start/End: Complemental strand, 27152983 - 27152865
Alignment:
| Q |
21 |
tttgacagttgaatgattcaagtggggatccagactatgagaaactatggaagccacctccaaatcatgggtttcaaccctgtacaaagcctactcctaa |
120 |
Q |
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| T |
27152983 |
tttgacagttgaatcgtttaagaggggattctgattacgtgaagctgtggaagcctccatcaaatcgtgggtttcttccttgtacaaagcctactcctaa |
27152884 |
T |
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| Q |
121 |
ctacactagtaagaaactt |
139 |
Q |
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||||| ||||||||||| |
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| T |
27152883 |
ttacaccggtaagaaactt |
27152865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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