View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21088_low_4 (Length: 403)

Name: NF21088_low_4
Description: NF21088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21088_low_4
NF21088_low_4
[»] chr6 (42 HSPs)
chr6 (5-391)||(31420763-31421153)
chr6 (191-304)||(33068626-33068739)
chr6 (176-264)||(2514634-2514722)
chr6 (185-267)||(10452419-10452501)
chr6 (176-265)||(4006645-4006734)
chr6 (198-304)||(9027469-9027575)
chr6 (101-179)||(9027608-9027686)
chr6 (219-272)||(34405029-34405082)
chr6 (111-179)||(7931698-7931766)
chr6 (220-300)||(32408842-32408922)
chr6 (176-300)||(32975874-32975998)
chr6 (176-250)||(1402942-1403016)
chr6 (198-300)||(8349736-8349838)
chr6 (235-300)||(4003709-4003774)
chr6 (183-252)||(7354148-7354217)
chr6 (118-179)||(28641728-28641789)
chr6 (235-300)||(31461574-31461639)
chr6 (176-300)||(2727906-2728029)
chr6 (183-287)||(9732385-9732489)
chr6 (118-170)||(22743520-22743572)
chr6 (235-287)||(31668794-31668846)
chr6 (176-260)||(33500531-33500615)
chr6 (198-273)||(4325380-4325455)
chr6 (241-304)||(5623062-5623125)
chr6 (237-300)||(9833208-9833271)
chr6 (238-300)||(25099938-25100001)
chr6 (235-302)||(31337917-31337984)
chr6 (180-226)||(31828997-31829043)
chr6 (206-264)||(31969547-31969605)
chr6 (183-296)||(3217247-3217360)
chr6 (146-179)||(6536977-6537010)
chr6 (120-169)||(11393928-11393977)
chr6 (239-300)||(21888370-21888431)
chr6 (118-167)||(30863288-30863337)
chr6 (122-175)||(33832256-33832309)
chr6 (118-170)||(1810284-1810336)
chr6 (122-173)||(2455295-2455347)
chr6 (178-250)||(5328920-5328991)
chr6 (123-179)||(7945868-7945924)
chr6 (219-271)||(24836292-24836344)
chr6 (116-176)||(31624123-31624183)
chr6 (148-180)||(32386115-32386147)
[»] chr3 (36 HSPs)
chr3 (124-300)||(43116426-43116602)
chr3 (176-283)||(38462194-38462301)
chr3 (176-287)||(1816491-1816603)
chr3 (186-286)||(32703048-32703148)
chr3 (241-300)||(44240059-44240118)
chr3 (235-305)||(48597698-48597768)
chr3 (219-287)||(16790181-16790249)
chr3 (176-252)||(24235733-24235809)
chr3 (176-252)||(28306102-28306178)
chr3 (244-304)||(29094273-29094333)
chr3 (109-177)||(39602180-39602248)
chr3 (183-304)||(48397536-48397659)
chr3 (146-177)||(33883757-33883788)
chr3 (174-265)||(42084299-42084390)
chr3 (183-273)||(27792795-27792885)
chr3 (110-180)||(42745067-42745137)
chr3 (118-179)||(3015822-3015883)
chr3 (178-267)||(12923377-12923466)
chr3 (206-275)||(16790436-16790505)
chr3 (118-179)||(20195012-20195072)
chr3 (118-179)||(21574520-21574581)
chr3 (176-209)||(23249545-23249578)
chr3 (118-179)||(24281077-24281138)
chr3 (122-179)||(30573897-30573954)
chr3 (146-179)||(45432946-45432979)
chr3 (221-265)||(2304336-2304380)
chr3 (240-304)||(28289235-28289299)
chr3 (219-251)||(33880636-33880668)
chr3 (176-304)||(33965539-33965670)
chr3 (148-176)||(34414793-34414821)
chr3 (148-176)||(40321078-40321106)
chr3 (177-265)||(42530165-42530253)
chr3 (117-177)||(47249464-47249524)
chr3 (148-176)||(48991884-48991912)
chr3 (151-179)||(51206510-51206538)
chr3 (178-250)||(54775074-54775145)
[»] chr7 (36 HSPs)
chr7 (179-300)||(47527986-47528107)
chr7 (176-300)||(27481344-27481468)
chr7 (176-300)||(47003983-47004107)
chr7 (183-304)||(49060432-49060553)
chr7 (322-376)||(18810335-18810389)
chr7 (118-179)||(46082066-46082127)
chr7 (124-175)||(6226141-6226192)
chr7 (235-306)||(28844376-28844447)
chr7 (235-300)||(753313-753378)
chr7 (183-264)||(5373157-5373238)
chr7 (176-257)||(36874015-36874096)
chr7 (179-267)||(3610793-3610881)
chr7 (176-252)||(5006559-5006635)
chr7 (147-179)||(7244710-7244742)
chr7 (176-296)||(9527140-9527260)
chr7 (176-272)||(44241784-44241879)
chr7 (148-180)||(47134766-47134798)
chr7 (176-267)||(27492724-27492815)
chr7 (199-266)||(27626197-27626264)
chr7 (183-306)||(28340453-28340576)
chr7 (183-273)||(46081956-46082047)
chr7 (220-270)||(4591468-4591518)
chr7 (142-176)||(6552295-6552329)
chr7 (198-296)||(19624126-19624224)
chr7 (219-252)||(3802232-3802265)
chr7 (116-173)||(24967097-24967154)
chr7 (122-179)||(25670569-25670626)
chr7 (235-272)||(27389307-27389344)
chr7 (175-268)||(28634978-28635071)
chr7 (219-299)||(8445183-8445263)
chr7 (117-177)||(11048059-11048119)
chr7 (126-170)||(20888381-20888425)
chr7 (143-179)||(26935561-26935597)
chr7 (147-179)||(27378836-27378868)
chr7 (185-237)||(31338467-31338519)
chr7 (122-170)||(32791735-32791783)
[»] chr4 (46 HSPs)
chr4 (183-300)||(8422896-8423011)
chr4 (199-287)||(7749155-7749243)
chr4 (176-296)||(24443938-24444058)
chr4 (221-300)||(40709475-40709554)
chr4 (186-267)||(4071812-4071892)
chr4 (183-300)||(24929389-24929506)
chr4 (118-179)||(33534148-33534209)
chr4 (176-272)||(24160545-24160641)
chr4 (127-177)||(25332807-25332858)
chr4 (199-273)||(36734816-36734890)
chr4 (183-265)||(42321936-42322018)
chr4 (122-176)||(49219172-49219226)
chr4 (219-272)||(969438-969491)
chr4 (117-170)||(9843231-9843284)
chr4 (112-177)||(28614781-28614846)
chr4 (206-303)||(47970211-47970308)
chr4 (219-299)||(4471068-4471148)
chr4 (122-270)||(46013296-46013444)
chr4 (192-287)||(43372035-43372130)
chr4 (141-180)||(43824312-43824351)
chr4 (183-302)||(49219033-49219152)
chr4 (185-272)||(53943531-53943617)
chr4 (118-176)||(1312874-1312932)
chr4 (112-162)||(27616277-27616327)
chr4 (176-221)||(49032100-49032146)
chr4 (184-250)||(50745946-50746012)
chr4 (116-177)||(52315173-52315235)
chr4 (176-250)||(52735068-52735142)
chr4 (142-180)||(56055779-56055817)
chr4 (122-179)||(1137742-1137799)
chr4 (146-179)||(17884098-17884131)
chr4 (191-252)||(21953217-21953278)
chr4 (146-175)||(24747353-24747382)
chr4 (198-267)||(27405980-27406049)
chr4 (219-300)||(30024596-30024677)
chr4 (146-179)||(42461281-42461314)
chr4 (122-179)||(46110233-46110290)
chr4 (146-179)||(47145992-47146025)
chr4 (219-264)||(51044552-51044597)
chr4 (138-167)||(54327452-54327481)
chr4 (220-268)||(1404350-1404398)
chr4 (123-179)||(24929523-24929579)
chr4 (176-272)||(30207621-30207716)
chr4 (259-303)||(35684261-35684305)
chr4 (219-287)||(39929854-39929922)
chr4 (219-287)||(51555960-51556028)
[»] chr8 (57 HSPs)
chr8 (176-300)||(4558694-4558818)
chr8 (176-300)||(29972972-29973101)
chr8 (324-376)||(3451196-3451248)
chr8 (176-296)||(35869737-35869857)
chr8 (198-296)||(3645888-3645986)
chr8 (123-251)||(926432-926561)
chr8 (235-300)||(12972752-12972817)
chr8 (183-252)||(16210943-16211012)
chr8 (199-272)||(35534934-35535007)
chr8 (183-272)||(38561650-38561739)
chr8 (189-265)||(3945205-3945281)
chr8 (176-287)||(11415063-11415174)
chr8 (118-177)||(30389131-30389190)
chr8 (222-300)||(5226498-5226576)
chr8 (206-300)||(34563146-34563240)
chr8 (183-252)||(1470913-1470982)
chr8 (235-304)||(6918923-6918992)
chr8 (183-272)||(11056724-11056813)
chr8 (118-179)||(30918143-30918203)
chr8 (219-292)||(33209313-33209386)
chr8 (231-300)||(42508668-42508737)
chr8 (235-300)||(43208242-43208307)
chr8 (176-287)||(8062432-8062544)
chr8 (118-185)||(5069721-5069788)
chr8 (118-177)||(7111300-7111359)
chr8 (192-267)||(11188221-11188296)
chr8 (230-297)||(11476991-11477058)
chr8 (235-286)||(26716545-26716596)
chr8 (176-247)||(27728071-27728142)
chr8 (176-250)||(6864509-6864586)
chr8 (206-272)||(6918259-6918325)
chr8 (219-265)||(7646137-7646183)
chr8 (235-273)||(8629032-8629070)
chr8 (324-374)||(26002999-26003049)
chr8 (149-179)||(26284805-26284835)
chr8 (198-252)||(31315525-31315579)
chr8 (122-175)||(32840968-32841022)
chr8 (219-288)||(35298571-35298641)
chr8 (175-273)||(39551258-39551356)
chr8 (219-264)||(1664315-1664360)
chr8 (128-177)||(2594986-2595035)
chr8 (118-179)||(8060699-8060760)
chr8 (122-179)||(12851206-12851263)
chr8 (146-179)||(20672780-20672813)
chr8 (183-252)||(26479723-26479791)
chr8 (219-300)||(29699150-29699231)
chr8 (142-179)||(32288766-32288803)
chr8 (120-177)||(40728398-40728455)
chr8 (146-179)||(42215089-42215122)
chr8 (219-267)||(1666974-1667022)
chr8 (235-267)||(9541240-9541272)
chr8 (184-300)||(10727093-10727209)
chr8 (176-272)||(28769389-28769485)
chr8 (176-272)||(30013143-30013238)
chr8 (175-227)||(34849072-34849124)
chr8 (184-300)||(35453681-35453797)
chr8 (219-267)||(40356800-40356848)
[»] scaffold0590 (1 HSPs)
scaffold0590 (198-300)||(1146-1248)
[»] scaffold0275 (1 HSPs)
scaffold0275 (198-300)||(2727-2829)
[»] chr5 (38 HSPs)
chr5 (189-267)||(35135725-35135803)
chr5 (118-179)||(8089966-8090027)
chr5 (184-265)||(10907310-10907391)
chr5 (176-253)||(14295449-14295526)
chr5 (231-299)||(6738512-6738580)
chr5 (219-287)||(29115306-29115374)
chr5 (176-300)||(33961599-33961723)
chr5 (235-303)||(34975271-34975339)
chr5 (231-306)||(14716575-14716650)
chr5 (176-267)||(18704086-18704176)
chr5 (235-298)||(29588778-29588841)
chr5 (177-300)||(39257438-39257560)
chr5 (218-300)||(26516194-26516276)
chr5 (219-296)||(20982228-20982305)
chr5 (116-179)||(7907911-7907975)
chr5 (183-294)||(14331256-14331367)
chr5 (176-272)||(35960338-35960433)
chr5 (116-179)||(2568688-2568751)
chr5 (118-177)||(4619739-4619798)
chr5 (206-288)||(7096207-7096289)
chr5 (178-272)||(19177403-19177497)
chr5 (122-179)||(10125701-10125758)
chr5 (118-179)||(13604828-13604889)
chr5 (146-179)||(17258890-17258923)
chr5 (176-209)||(18543246-18543279)
chr5 (142-179)||(33533542-33533579)
chr5 (109-162)||(34205288-34205341)
chr5 (198-267)||(37063146-37063215)
chr5 (118-179)||(37611194-37611255)
chr5 (118-179)||(37787924-37787985)
chr5 (239-299)||(2569815-2569875)
chr5 (143-179)||(3237123-3237159)
chr5 (191-287)||(4991008-4991104)
chr5 (148-180)||(10303825-10303857)
chr5 (216-272)||(13224353-13224409)
chr5 (176-236)||(34205199-34205259)
chr5 (148-180)||(35963270-35963302)
chr5 (109-177)||(41957421-41957489)
[»] chr2 (54 HSPs)
chr2 (147-249)||(31739980-31740082)
chr2 (176-257)||(32694151-32694232)
chr2 (176-272)||(17952751-17952847)
chr2 (183-304)||(5133663-5133785)
chr2 (176-306)||(10143062-10143192)
chr2 (183-304)||(28803563-28803684)
chr2 (118-179)||(35378995-35379056)
chr2 (176-272)||(9478223-9478319)
chr2 (220-272)||(10150679-10150731)
chr2 (219-267)||(13864579-13864627)
chr2 (236-299)||(42817486-42817549)
chr2 (118-180)||(9556268-9556330)
chr2 (183-249)||(9878739-9878805)
chr2 (241-299)||(43808473-43808531)
chr2 (144-177)||(1493518-1493551)
chr2 (235-300)||(15171146-15171211)
chr2 (184-265)||(25609727-25609808)
chr2 (178-266)||(35755554-35755642)
chr2 (116-177)||(44606087-44606148)
chr2 (236-300)||(15200439-15200503)
chr2 (176-268)||(28933752-28933844)
chr2 (185-300)||(29503142-29503255)
chr2 (235-299)||(33087707-33087769)
chr2 (146-177)||(7928306-7928337)
chr2 (236-287)||(11393765-11393816)
chr2 (236-287)||(11410426-11410477)
chr2 (117-180)||(41809223-41809286)
chr2 (142-180)||(9875468-9875506)
chr2 (142-180)||(39236498-39236536)
chr2 (122-180)||(39621980-39622038)
chr2 (122-176)||(45314901-45314955)
chr2 (126-179)||(1056116-1056169)
chr2 (109-170)||(14316115-14316176)
chr2 (142-179)||(16867769-16867806)
chr2 (122-179)||(28677642-28677699)
chr2 (105-170)||(28933863-28933927)
chr2 (219-284)||(31461350-31461415)
chr2 (176-265)||(34054951-34055040)
chr2 (146-179)||(35378539-35378572)
chr2 (176-257)||(39983282-39983362)
chr2 (118-155)||(41905895-41905932)
chr2 (118-179)||(43065429-43065490)
chr2 (146-179)||(43717143-43717176)
chr2 (238-287)||(43965242-43965291)
chr2 (146-175)||(44443355-44443384)
chr2 (219-272)||(44606181-44606234)
chr2 (111-179)||(1647266-1647334)
chr2 (183-287)||(4550686-4550790)
chr2 (238-298)||(5867303-5867363)
chr2 (183-268)||(10769669-10769756)
chr2 (236-304)||(11393476-11393544)
chr2 (236-304)||(11410137-11410205)
chr2 (123-179)||(12313157-12313213)
chr2 (235-279)||(26484193-26484237)
[»] chr1 (48 HSPs)
chr1 (147-287)||(47877035-47877171)
chr1 (192-286)||(45107533-45107626)
chr1 (116-196)||(42757154-42757235)
chr1 (176-252)||(42556681-42556757)
chr1 (178-297)||(4200128-4200247)
chr1 (238-300)||(30237857-30237920)
chr1 (142-177)||(34290268-34290303)
chr1 (198-300)||(7200914-7201016)
chr1 (112-170)||(17420242-17420300)
chr1 (183-252)||(7218131-7218200)
chr1 (146-179)||(10199415-10199448)
chr1 (146-179)||(15361070-15361103)
chr1 (235-304)||(24857623-24857692)
chr1 (118-179)||(26461920-26461981)
chr1 (122-179)||(31517723-31517780)
chr1 (118-179)||(38170669-38170730)
chr1 (122-171)||(38578566-38578615)
chr1 (183-252)||(40304111-40304180)
chr1 (219-304)||(49557033-49557118)
chr1 (111-179)||(11639388-11639456)
chr1 (187-263)||(15360827-15360903)
chr1 (176-304)||(17420095-17420223)
chr1 (148-180)||(28689461-28689493)
chr1 (184-296)||(46504276-46504387)
chr1 (148-300)||(49516965-49517122)
chr1 (122-173)||(4481966-4482017)
chr1 (142-177)||(7137001-7137036)
chr1 (122-177)||(10280681-10280736)
chr1 (178-257)||(15488893-15488972)
chr1 (146-177)||(38503472-38503503)
chr1 (198-257)||(49692122-49692181)
chr1 (318-376)||(4803286-4803344)
chr1 (176-266)||(5756736-5756826)
chr1 (112-170)||(29929594-29929652)
chr1 (231-269)||(30043671-30043709)
chr1 (125-179)||(37593670-37593724)
chr1 (146-179)||(6292523-6292556)
chr1 (215-272)||(16980750-16980807)
chr1 (243-304)||(24263256-24263317)
chr1 (146-179)||(25479611-25479644)
chr1 (192-273)||(44032065-44032146)
chr1 (199-264)||(45804209-45804274)
chr1 (146-179)||(46252689-46252722)
chr1 (198-267)||(46499926-46499995)
chr1 (146-179)||(48748322-48748355)
chr1 (148-180)||(39347976-39348008)
chr1 (119-179)||(43722308-43722368)
chr1 (144-176)||(45975723-45975755)
[»] scaffold0091 (1 HSPs)
scaffold0091 (222-300)||(5915-5993)
[»] scaffold0311 (1 HSPs)
scaffold0311 (120-176)||(10598-10654)
[»] scaffold0608 (1 HSPs)
scaffold0608 (122-173)||(9620-9671)
[»] scaffold0584 (1 HSPs)
scaffold0584 (142-180)||(1336-1374)
[»] scaffold0446 (1 HSPs)
scaffold0446 (142-180)||(5462-5500)
[»] scaffold0352 (1 HSPs)
scaffold0352 (231-296)||(10963-11028)
[»] scaffold0199 (1 HSPs)
scaffold0199 (219-264)||(6756-6801)
[»] scaffold0072 (1 HSPs)
scaffold0072 (232-300)||(4868-4936)
[»] scaffold0024 (1 HSPs)
scaffold0024 (183-287)||(27485-27589)


Alignment Details
Target: chr6 (Bit Score: 350; Significance: 0; HSPs: 42)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 5 - 391
Target Start/End: Complemental strand, 31421153 - 31420763
Alignment:
Q  5 aaagatagaagaaaatttgatgaagaaattaaatctattcataataattattgttttttcgtattaacttatttgaa----tatacttccatataaacat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    |||||||||||||||| ||    
T  31421153 aaagatagaagaaaatttgatgaagaaattaaatctattcataatgattattattttttcgtattaacttatttgaacttatatacttccatataaatat 31421054  T
Q  101 gtgcaagtctattttgaagagcttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataagcttacgaaaacaacttatatctt 200  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31421053 gtgcaagtctattttgaagagcttatgaaaacaacttatcgcatattcataagttgttttcagcttattttcataagcttacgaaaacaacttatatctt 31420954  T
Q  201 atataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataaatgattatgctataaacacttaattaag 300  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31420953 atataaaaatagtttgattttattttaccatttattatagaaatagcttataaataaacacttatataataaatgattatgctataaacacttaattaag 31420854  T
Q  301 ctgtatttaggaaattataccctttctgctagactgtgactatcagtagcttgacctcttcttgctctaacatgaacaacttcctttgctt 391  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31420853 ctgtatttaggaaattataccctttctgctagactgtgactatcagtagcttgacctcttcttgctctaacatgaacaacttcctttgctt 31420763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 191 - 304
Target Start/End: Original strand, 33068626 - 33068739
Alignment:
Q  191 cttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataaatgattatgctataaaca 290  Q
    |||||||||||| | |||| ||| |||| |||||||| | ||| ||||||||||| |||||| |||| || |||| | ||||  | ||||||||||||||    
T  33068626 cttatatcttatttgaaaacagtttgatattattttatcttttgttatagaaataacttatacataagcatttatttgataagcgcttatgctataaaca 33068725  T
Q  291 cttaattaagctgt 304  Q
    ||||||||||||||    
T  33068726 cttaattaagctgt 33068739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 176 - 264
Target Start/End: Complemental strand, 2514722 - 2514634
Alignment:
Q  176 agcttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacactta 264  Q
    |||||| ||||| |||||||| || |||||||| |||| ||| ||||||||| | |||||||||||||||||||||| |||| ||||||    
T  2514722 agcttatgaaaataacttatagctcatataaaattagtttgactttattttatcttttattatagaaatagcttatacataagcactta 2514634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 267
Target Start/End: Original strand, 10452419 - 10452501
Alignment:
Q  185 aaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatat 267  Q
    |||||||||||| ||||||| |||||||| |||||||||||||   ||| |||||||||||||||||| |||| |||| ||||    
T  10452419 aaacaacttatagcttatatgaaaatagtttgattttattttatattttgttatagaaatagcttatacataagcactgatat 10452501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 176 - 265
Target Start/End: Complemental strand, 4006734 - 4006645
Alignment:
Q  176 agcttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttat 265  Q
    |||||| |||||||||||||| |||||||||||| | | ||| ||||||||| ||||| ||||||||||| |||||  |||| |||||||    
T  4006734 agcttatgaaaacaacttatagcttatataaaaacaatttgactttattttatcatttgttatagaaatatcttatgcataagcacttat 4006645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 198 - 304
Target Start/End: Complemental strand, 9027575 - 9027469
Alignment:
Q  198 cttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataaatgattatgctataaacacttaatt 297  Q
    ||||||| |||| ||| ||| ||||||||| | | |||| ||||||||||||||| |||| |||||||||||||| || | ||||||||| | |||| ||    
T  9027575 cttatattaaaacagtttgactttattttatcttctattgtagaaatagcttatagataagcacttatataataagtgttcatgctataagcgcttactt 9027476  T
Q  298 aagctgt 304  Q
    || ||||    
T  9027475 aaactgt 9027469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 101 - 179
Target Start/End: Complemental strand, 9027686 - 9027608
Alignment:
Q  101 gtgcaagtctattttgaagagcttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataagct 179  Q
    |||||||||| |||  ||||||||||| ||| |||| ||  ||| | ||||||||||||||||||||||||||||||||    
T  9027686 gtgcaagtctgtttgaaagagcttatggaaataacttatgacatgtccataagttgttttcagcttattttcataagct 9027608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 272
Target Start/End: Complemental strand, 34405082 - 34405029
Alignment:
Q  219 tttattttaccatttattatagaaatagcttataaataaacacttatataataa 272  Q
    ||||||||| | |||||||||||||||||||||| |||||||||||||| ||||    
T  34405082 tttattttaacttttattatagaaatagcttatagataaacacttatatcataa 34405029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 111 - 179
Target Start/End: Original strand, 7931698 - 7931766
Alignment:
Q  111 attttgaagagcttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataagct 179  Q
    |||| ||||||||||||||||||||| ||  ||| ||| ||||||||||||||||||||| | ||||||    
T  7931698 atttagaagagcttatgaaaacaacttatgacatgttcttaagttgttttcagcttatttccgtaagct 7931766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 220 - 300
Target Start/End: Complemental strand, 32408922 - 32408842
Alignment:
Q  220 ttattttaccatttattatagaaatagcttataaataaacacttatataataaatgattatgctataaacacttaattaag 300  Q
    |||||||||| ||| || ||||||||||||||| || |||| |||||| || |  | ||||||||||||||||||||||||    
T  32408922 ttattttaccttttgttgtagaaatagcttatacatcaacatttatatgatcatagtttatgctataaacacttaattaag 32408842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 176 - 300
Target Start/End: Complemental strand, 32975998 - 32975874
Alignment:
Q  176 agcttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataaatg 275  Q
    |||||| |||||||||||||  ||| |||  ||| ||| ||| |||||||||   ||| ||| ||||||| |||||| |||||||||||||| | ||  |    
T  32975998 agcttatgaaaacaacttattgcttctattgaaacagtttgactttattttatattttgttacagaaataacttatacataaacacttatatgagaagcg 32975899  T
Q  276 attatgctataaacacttaattaag 300  Q
     ||||||||||||| ||||||||||    
T  32975898 cttatgctataaacgcttaattaag 32975874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 250
Target Start/End: Complemental strand, 1403016 - 1402942
Alignment:
Q  176 agcttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagctta 250  Q
    |||||| |||||||| ||||| ||||||| |||||||| | | ||||||||| | ||| ||||||||||||||||    
T  1403016 agcttatgaaaacaatttatagcttatatgaaaatagtttaactttattttatcttttgttatagaaatagctta 1402942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 300
Target Start/End: Original strand, 8349736 - 8349838
Alignment:
Q  198 cttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataaatgattatgctataaacacttaatt 297  Q
    |||||||||||| | | | | ||||||||| | ||| ||| |||||||| ||||| | |||||||||||| |||| || ||||||||||| | |||||||    
T  8349736 cttatataaaaacaatttaactttattttatcttttgttagagaaatagtttatacacaaacacttatatgataagtggttatgctataagcgcttaatt 8349835  T
Q  298 aag 300  Q
    |||    
T  8349836 aag 8349838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 300
Target Start/End: Original strand, 4003709 - 4003774
Alignment:
Q  235 ttatagaaatagcttataaataaacacttatataataaatgattatgctataaacacttaattaag 300  Q
    |||||||||||||||||| |||| ||||||||  |||||   ||||||||||| ||||||||||||    
T  4003709 ttatagaaatagcttatacataagcacttatagcataaaaacttatgctataagcacttaattaag 4003774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 252
Target Start/End: Complemental strand, 7354217 - 7354148
Alignment:
Q  183 gaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttata 252  Q
    ||||||| ||| |||||||||| ||||||||  |||||||||||| | ||| |||||||||||| |||||    
T  7354217 gaaaacagcttgtatcttatatgaaaatagttcgattttattttatcttttgttatagaaatagtttata 7354148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 118 - 179
Target Start/End: Original strand, 28641728 - 28641789
Alignment:
Q  118 agagcttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataagct 179  Q
    |||||||||||||||| || ||  ||| |||||||| |||||| ||||||||||||||||||    
T  28641728 agagcttatgaaaacagcttataacatgttcataagctgtttttagcttattttcataagct 28641789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 300
Target Start/End: Complemental strand, 31461639 - 31461574
Alignment:
Q  235 ttatagaaatagcttataaataaacacttatataataaatgattatgctataaacacttaattaag 300  Q
    |||||||||||||||||| |||| |||||||| ||||| || ||||  ||||| ||||||||||||    
T  31461639 ttatagaaatagcttatacataagcacttatacaataagtgcttataatataagcacttaattaag 31461574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 300
Target Start/End: Original strand, 2727906 - 2728029
Alignment:
Q  176 agcttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataaatg 275  Q
    |||||| |||||||||||||| ||||||| || | | | |||||||  |||| | ||| ||||||||  |||||||| |||| ||||||||| || ||      
T  2727906 agcttatgaaaacaacttatagcttatatcaatacaatttgatttttgtttatcttttgttatagaagcagcttatacataagcacttatatgat-aagc 2728004  T
Q  276 attatgctataaacacttaattaag 300  Q
    | |||||||||||||||| ||||||    
T  2728005 actatgctataaacacttcattaag 2728029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 287
Target Start/End: Complemental strand, 9732489 - 9732385
Alignment:
Q  183 gaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataaatgattatgc 282  Q
    |||||||||||||| |||  || |||| | | ||| || |||||| | |||| ||||||||||||||||  |||| |||||||||  |||||| ||||||    
T  9732489 gaaaacaacttataccttgcatgaaaacaatttgacttaattttatcctttaatatagaaatagcttatgcataagcacttatatggtaaatgtttatgc 9732390  T
Q  283 tataa 287  Q
    |||||    
T  9732389 tataa 9732385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 22743572 - 22743520
Alignment:
Q  118 agagcttatgaaaacaactaattgcatattcataagttgttttcagcttattt 170  Q
    |||||| |||||||||||| ||| ||| |||||||| ||||||||||||||||    
T  22743572 agagctcatgaaaacaacttattacatgttcataagctgttttcagcttattt 22743520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 31668794 - 31668846
Alignment:
Q  235 ttatagaaatagcttataaataaacacttatataataaatgattatgctataa 287  Q
    |||||||||||||||||| |||| ||||||||| |||| || |||||||||||    
T  31668794 ttatagaaatagcttatacataagcacttatatgataattgcttatgctataa 31668846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 260
Target Start/End: Original strand, 33500531 - 33500615
Alignment:
Q  176 agcttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaaca 260  Q
    ||||| || ||||| |||||| |||||||  ||| ||| |||||||| |||| | ||| |||||||||||||||||| |||||||    
T  33500531 agcttgcggaaacagcttataacttatattgaaacagtttgattttactttatcttttgttatagaaatagcttatacataaaca 33500615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 198 - 273
Target Start/End: Original strand, 4325380 - 4325455
Alignment:
Q  198 cttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataaa 273  Q
    ||||||| |||||||| ||  | ||||||| ||||||||||||||||| |||| | |||| ||||||||| |||||    
T  4325380 cttatatgaaaatagtttgtctctattttatcatttattatagaaataacttagacataagcacttatatgataaa 4325455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 241 - 304
Target Start/End: Complemental strand, 5623125 - 5623062
Alignment:
Q  241 aaatagcttataaataaacacttatataataaatgattatgctataaacacttaattaagctgt 304  Q
    ||||| |||||| |||| ||||||||| ||||| ||||||||||||||  |||| |||||||||    
T  5623125 aaatatcttatacataagcacttatatgataaacgattatgctataaatgcttagttaagctgt 5623062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 237 - 300
Target Start/End: Original strand, 9833208 - 9833271
Alignment:
Q  237 atagaaatagcttataaataaacacttatataataaatgattatgctataaacacttaattaag 300  Q
    ||||||||| |||||| | || ||||||||| ||||| | ||||| ||||||||||||||||||    
T  9833208 atagaaatatcttatagagaagcacttatatgataaacgcttatgttataaacacttaattaag 9833271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 300
Target Start/End: Complemental strand, 25100001 - 25099938
Alignment:
Q  238 tagaaatagctt-ataaataaacacttatataataaatgattatgctataaacacttaattaag 300  Q
    |||||||||||| ||| |||| |||| |||| ||||| | ||||||||||||||||||||||||    
T  25100001 tagaaatagcttgatacataagcactgatatgataaaagcttatgctataaacacttaattaag 25099938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 235 - 302
Target Start/End: Complemental strand, 31337984 - 31337917
Alignment:
Q  235 ttatagaaatagcttataaataaacacttatataataaatgattatgctataaacacttaattaagct 302  Q
    |||||||||||| ||||| ||||  ||||||| |||||  | |||||||||||||| |||||||||||    
T  31337984 ttatagaaatagtttatacataagtacttatacaataagcgcttatgctataaacatttaattaagct 31337917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 226
Target Start/End: Complemental strand, 31829043 - 31828997
Alignment:
Q  180 tacgaaaacaacttatatcttatataaaaatagtgtgattttatttt 226  Q
    |||||||||| |||||| ||||||| |||||||| ||||||||||||    
T  31829043 tacgaaaacagcttataacttatatgaaaatagtttgattttatttt 31828997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 264
Target Start/End: Original strand, 31969547 - 31969605
Alignment:
Q  206 aaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacactta 264  Q
    |||||||| ||||||||||||| |||||||| |  |||||| |||||||||| ||||||    
T  31969547 aaaatagtttgattttattttatcatttattttgtaaatagtttataaataaccactta 31969605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 296
Target Start/End: Original strand, 3217247 - 3217360
Alignment:
Q  183 gaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataaatgattatgc 282  Q
    ||||| |||| | ||||||||| |||||| | ||| ||||||||| | | | ||| | |||||||||||| |||| ||||||||| ||||  | |||| |    
T  3217247 gaaaaaaactaaaatcttatatgaaaataatttgactttattttatcttctcttacaaaaatagcttatacataagcacttatatgataatcgcttatac 3217346  T
Q  283 tataaacacttaat 296  Q
    ||||| ||||||||    
T  3217347 tataagcacttaat 3217360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 179
Target Start/End: Complemental strand, 6537010 - 6536977
Alignment:
Q  146 ttcataagttgttttcagcttattttcataagct 179  Q
    ||||||||||||||||||||||||| ||||||||    
T  6537010 ttcataagttgttttcagcttatttccataagct 6536977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 169
Target Start/End: Complemental strand, 11393977 - 11393928
Alignment:
Q  120 agcttatgaaaacaactaattgcatattcataagttgttttcagcttatt 169  Q
    ||||||||||||||||| |||||| ||||||||   ||||||||||||||    
T  11393977 agcttatgaaaacaacttattgcaaattcataacccgttttcagcttatt 11393928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 300
Target Start/End: Complemental strand, 21888431 - 21888370
Alignment:
Q  239 agaaatagcttataaataaacacttatataataaatgattatgctataaacacttaattaag 300  Q
    |||||||| ||||| |||||||||||||| ||||  | ||| ||||||||| ||||||||||    
T  21888431 agaaatagattatacataaacacttatatgataatagtttaagctataaactcttaattaag 21888370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 167
Target Start/End: Complemental strand, 30863337 - 30863288
Alignment:
Q  118 agagcttatgaaaacaactaattgcatattcataagttgttttcagctta 167  Q
    ||||||||||||||||||| ||  ||| | ||||||||||||||||||||    
T  30863337 agagcttatgaaaacaacttatgacatgtacataagttgttttcagctta 30863288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 175
Target Start/End: Original strand, 33832256 - 33832309
Alignment:
Q  122 cttatgaaaacaactaattgcatattcataagttgttttcagcttattttcata 175  Q
    ||||||||||||||| ||  ||| || |||||||||||| ||||||||||||||    
T  33832256 cttatgaaaacaacttatgacatgtttataagttgtttttagcttattttcata 33832309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 1810284 - 1810336
Alignment:
Q  118 agagcttatgaaaacaactaattgcatattcataagttgttttcagcttattt 170  Q
    ||||||||| |||||||||||| |||| | |||||| || |||||||||||||    
T  1810284 agagcttattaaaacaactaatggcatgtccataagctgctttcagcttattt 1810336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 173
Target Start/End: Complemental strand, 2455347 - 2455295
Alignment:
Q  122 cttatgaaaacaactaattgcata-ttcataagttgttttcagcttattttca 173  Q
    ||||||||||||||| ||| |||  || |||||||||||||||||||||||||    
T  2455347 cttatgaaaacaacttattacattgtttataagttgttttcagcttattttca 2455295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 5328991 - 5328920
Alignment:
Q  178 cttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagctta 250  Q
    |||||||||||| ||||||  |||||||||||| || ||| ||||||||| | ||| ||||||||||| ||||    
T  5328991 cttacgaaaacagcttataa-ttatataaaaatggtttgactttattttatcttttgttatagaaataactta 5328920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 7945868 - 7945924
Alignment:
Q  123 ttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataagct 179  Q
    |||||||||||||| || |||| || || ||||||||| ||||||||| ||||||||    
T  7945868 ttatgaaaacaacttatggcatgtttattagttgttttaagcttatttccataagct 7945924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 271
Target Start/End: Original strand, 24836292 - 24836344
Alignment:
Q  219 tttattttaccatttattatagaaatagcttataaataaacacttatataata 271  Q
    ||||||||| | ||| ||||||||||| |||||| ||||| ||||||||||||    
T  24836292 tttattttatcttttgttatagaaataacttatacataaatacttatataata 24836344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 31624183 - 31624123
Alignment:
Q  116 gaagagcttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataa 176  Q
    ||||| |||||||||||| || ||  ||| |||||||| |||||||| |||||||||||||    
T  31624183 gaagaacttatgaaaacagcttatgacatgttcataagctgttttcaacttattttcataa 31624123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 180
Target Start/End: Original strand, 32386115 - 32386147
Alignment:
Q  148 cataagttgttttcagcttattttcataagctt 180  Q
    |||||||||||||||||||| ||||||||||||    
T  32386115 cataagttgttttcagcttactttcataagctt 32386147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 124 - 300
Target Start/End: Original strand, 43116426 - 43116602
Alignment:
Q  124 tatgaaaacaactaattgcatattcataagttgttttcagcttattttcataagcttacgaaaacaacttatatcttatataaaaatagtgtgattttat 223  Q
    ||||||||||||| ||  ||| ||| |||||| |||||| ||||||| |||||||||| |||||| ||||||| ||||||| ||||| || |||||| ||    
T  43116426 tatgaaaacaacttataacatgttcttaagttcttttcaacttatttgcataagcttatgaaaacgacttatagcttatatgaaaattgtttgatttgat 43116525  T
Q  224 tttaccatttattatagaaatagcttataaataaacacttatataataaatgattatgctataaacacttaattaag 300  Q
    |||| | ||| |||||||||||||||| | |||||||||| ||| |||||   |||||||||||||||| |||||||    
T  43116526 tttatcttttgttatagaaatagcttacacataaacacttgtatgataaacatttatgctataaacactaaattaag 43116602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 176 - 283
Target Start/End: Complemental strand, 38462301 - 38462194
Alignment:
Q  176 agcttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataaatg 275  Q
    |||||| |||||||  ||||| | ||||| |||| ||| ||| ||||||||| | |||  |||||||||||||||||||||||||||||||| |||| ||    
T  38462301 agcttatgaaaacagtttatagcatatatgaaaacagtttgactttattttatcttttggtatagaaatagcttataaataaacacttatatgataagtg 38462202  T
Q  276 attatgct 283  Q
     |||||||    
T  38462201 tttatgct 38462194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 176 - 287
Target Start/End: Complemental strand, 1816603 - 1816491
Alignment:
Q  176 agcttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattat-agaaatagcttataaataaacacttatataataaat 274  Q
    |||||| ||||||||||||||||||||| ||||| ||| ||| ||||||||| | |||||||| | |||||| ||||| || | | ||||||| |||||     
T  1816603 agcttatgaaaacaacttatatcttatacaaaaacagtttgactttattttatcttttattataaaaaatagtttatacattagctcttatatgataaac 1816504  T
Q  275 gattatgctataa 287  Q
     ||||||||||||    
T  1816503 aattatgctataa 1816491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 186 - 286
Target Start/End: Complemental strand, 32703148 - 32703048
Alignment:
Q  186 aacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataaatgattatgctat 285  Q
    ||||| ||||| ||||||| |||| | | ||| ||||||||| | ||||| |||||||||||||||| ||||||| |||||| |||||||  ||||||||    
T  32703148 aacaatttatagcttatatgaaaacaatttgagtttattttatcttttataatagaaatagcttatacataaacatttatatgataaatggatatgctat 32703049  T
Q  286 a 286  Q
    |    
T  32703048 a 32703048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 241 - 300
Target Start/End: Complemental strand, 44240118 - 44240059
Alignment:
Q  241 aaatagcttataaataaacacttatataataaatgattatgctataaacacttaattaag 300  Q
    |||||||||| | |||| ||||||||| ||||||||||||||||||| |||||| |||||    
T  44240118 aaatagcttaaagataagcacttatatgataaatgattatgctataagcacttacttaag 44240059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 48597698 - 48597768
Alignment:
Q  235 ttatagaaatagcttataaataaacacttatataataaatgattatgctataaacacttaattaagctgta 305  Q
    |||||||||||| ||| | |||| |||||| ||||||| ||||| |||||||| | |||||||||||||||    
T  48597698 ttatagaaatagtttaaacataagcacttacataataagtgattgtgctataagcgcttaattaagctgta 48597768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 287
Target Start/End: Original strand, 16790181 - 16790249
Alignment:
Q  219 tttattttaccatttattatagaaatagcttataaataaacacttatataataaatgattatgctataa 287  Q
    ||||||||| | ||| ||||||||||| |||||| |||| ||||||||| ||||| | |||||||||||    
T  16790181 tttattttatcttttgttatagaaataacttatatataagcacttatatgataaacgcttatgctataa 16790249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 252
Target Start/End: Original strand, 24235733 - 24235809
Alignment:
Q  176 agcttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttata 252  Q
    |||||| |||||||||||||| |||||||  ||||||| ||| ||||| ||| | ||| ||||||||||| ||||||    
T  24235733 agcttatgaaaacaacttatagcttatattcaaatagtttgactttatattatcttttgttatagaaataacttata 24235809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 252
Target Start/End: Complemental strand, 28306178 - 28306102
Alignment:
Q  176 agcttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttata 252  Q
    |||||| ||||||||||| || ||||||| |||| ||| ||| ||||||||||  ||| ||||||| ||||||||||    
T  28306178 agcttatgaaaacaacttgtaacttatatgaaaacagtttgactttattttactttttgttatagagatagcttata 28306102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 304
Target Start/End: Complemental strand, 29094333 - 29094273
Alignment:
Q  244 tagcttataaataaacacttatataataaatgattatgctataaacacttaattaagctgt 304  Q
    ||||||||| |||||||||||||| |||| || ||||||||||| |  |||||||||||||    
T  29094333 tagcttatacataaacacttatatgataagtgtttatgctataagcgtttaattaagctgt 29094273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 177
Target Start/End: Original strand, 39602180 - 39602248
Alignment:
Q  109 ctattttgaagagcttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataag 177  Q
    |||||| |||||||||||||| ||| || ||  ||| ||||||| ||||||||| ||||||||||||||    
T  39602180 ctatttggaagagcttatgaagacagcttatgacatgttcataaattgttttcaacttattttcataag 39602248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 304
Target Start/End: Complemental strand, 48397659 - 48397536
Alignment:
Q  183 gaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttata--taataaatgattat 280  Q
    |||||||||||||| |||| ||||||| | | ||| ||||||||| | ||||||||| ||||| |||||| ||  |||||||||  | ||||  | ||||    
T  48397659 gaaaacaacttatagcttaaataaaaacaatttgactttattttatcttttattataaaaataacttatacatttacacttataagttataagggcttat 48397560  T
Q  281 gctataaacacttaattaagctgt 304  Q
    ||||  ||| ||||||||||||||    
T  48397559 gctaccaacgcttaattaagctgt 48397536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 146 - 177
Target Start/End: Original strand, 33883757 - 33883788
Alignment:
Q  146 ttcataagttgttttcagcttattttcataag 177  Q
    ||||||||||||||||||||||||||||||||    
T  33883757 ttcataagttgttttcagcttattttcataag 33883788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 174 - 265
Target Start/End: Original strand, 42084299 - 42084390
Alignment:
Q  174 taagcttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttat 265  Q
    |||||||| |||||||||| ||| ||||||| |||| |   |||  |||||||| | ||| |||||||||||||||||| ||| ||||||||    
T  42084299 taagcttatgaaaacaactaatagcttatatcaaaacaagttgacattattttatcctttgttatagaaatagcttatacatagacacttat 42084390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 273
Target Start/End: Complemental strand, 27792885 - 27792795
Alignment:
Q  183 gaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataaa 273  Q
    |||||||||||  | ||||||| |||||||| |||  |||||||| | ||| || | ||||||||||||| |||| ||||||||| |||||    
T  27792885 gaaaacaacttgcagcttatatgaaaatagtttgaccttattttatcttttgtttttgaaatagcttatacataagcacttatatgataaa 27792795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 180
Target Start/End: Complemental strand, 42745137 - 42745067
Alignment:
Q  110 tattttgaagagcttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataagctt 180  Q
    ||||| |||||  ||||| |||||||| ||  ||| ||||||||||||||||| ||||||| |||||||||    
T  42745137 tatttagaagaatttatgtaaacaacttatgacatgttcataagttgttttcatcttatttccataagctt 42745067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 179
Target Start/End: Original strand, 3015822 - 3015883
Alignment:
Q  118 agagcttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataagct 179  Q
    ||||||||||||||||||| ||  ||| | |||||| |||||||| |||||||| |||||||    
T  3015822 agagcttatgaaaacaacttatgacatgtccataagatgttttcatcttattttaataagct 3015883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 267
Target Start/End: Original strand, 12923377 - 12923466
Alignment:
Q  178 cttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatat 267  Q
    |||| |||||||||||||| ||||||  |||  ||| ||| ||||||||| | ||||||| || ||||||||||| | || |||||||||    
T  12923377 cttaggaaaacaacttatagcttataagaaagcagtttgactttattttatcttttattacagcaatagcttatacacaagcacttatat 12923466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 275
Target Start/End: Original strand, 16790436 - 16790505
Alignment:
Q  206 aaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataaatg 275  Q
    |||||| | ||||||||||||| |  || ||||| |||||||||||| |||| ||||||||| |||||||    
T  16790436 aaaataatttgattttattttatctgttgttataaaaatagcttatacataagcacttatatgataaatg 16790505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 179
Target Start/End: Original strand, 20195012 - 20195072
Alignment:
Q  118 agagcttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataagct 179  Q
    ||||||||||||||||  | ||  |||||||| |||||||||||||||| ||||||||||||    
T  20195012 agagcttatgaaaacagtttatgacatattcaaaagttgttttcagctt-ttttcataagct 20195072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 179
Target Start/End: Complemental strand, 21574581 - 21574520
Alignment:
Q  118 agagcttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataagct 179  Q
    ||||||||||||||||||| ||  ||| |||||||| || ||| ||||||||| ||||||||    
T  21574581 agagcttatgaaaacaacttatgacatgttcataagctgcttttagcttatttccataagct 21574520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 209
Target Start/End: Complemental strand, 23249578 - 23249545
Alignment:
Q  176 agcttacgaaaacaacttatatcttatataaaaa 209  Q
    |||||| |||||||||||||||||||||||||||    
T  23249578 agcttatgaaaacaacttatatcttatataaaaa 23249545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 179
Target Start/End: Complemental strand, 24281138 - 24281077
Alignment:
Q  118 agagcttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataagct 179  Q
    ||||||||||||||||||| ||   || | ||||||||||||||| |||| |||||||||||    
T  24281138 agagcttatgaaaacaacttatgatatctccataagttgttttcaacttactttcataagct 24281077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 30573897 - 30573954
Alignment:
Q  122 cttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataagct 179  Q
    ||||||||||||| | || |||| |||||||| |||||||||||||| ||||| ||||    
T  30573897 cttatgaaaacaaattatggcatgttcataagctgttttcagcttatgttcatcagct 30573954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 179
Target Start/End: Original strand, 45432946 - 45432979
Alignment:
Q  146 ttcataagttgttttcagcttattttcataagct 179  Q
    ||||||||||||||||||||||||| ||||||||    
T  45432946 ttcataagttgttttcagcttatttccataagct 45432979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 265
Target Start/End: Original strand, 2304336 - 2304380
Alignment:
Q  221 tattttaccatttattatagaaatagcttataaataaacacttat 265  Q
    ||||||| | |||||||||||||||||||||| |||| |||||||    
T  2304336 tattttatcttttattatagaaatagcttatacataatcacttat 2304380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 304
Target Start/End: Original strand, 28289235 - 28289299
Alignment:
Q  240 gaaatagcttataaataaacacttatataataaatgattatgctataaacacttaattaagctgt 304  Q
    ||||||||||||| || | |||||| || |||| || |||||||| |||||||||||||| ||||    
T  28289235 gaaatagcttatacatgagcacttagatgataagtgtttatgctaaaaacacttaattaaactgt 28289299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 251
Target Start/End: Original strand, 33880636 - 33880668
Alignment:
Q  219 tttattttaccatttattatagaaatagcttat 251  Q
    ||||||||||| |||||||||||||||||||||    
T  33880636 tttattttaccttttattatagaaatagcttat 33880668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 304
Target Start/End: Original strand, 33965539 - 33965670
Alignment:
Q  176 agcttacgaaaacaacttatatcttatata--aaaatagtgtgattttattttaccatttattatagaaa-tagcttataaataaacacttatataataa 272  Q
    |||||| ||||||| |||||| ||| ||||  |||| ||| ||| ||||||||||| ||| ||||| ||| || ||| || | |||||| |||| ||||     
T  33965539 agcttatgaaaacatcttatagcttttatatgaaaacagtttgactttattttaccttttgttataaaaaataacttgtacaaaaacacctatacaatac 33965638  T
Q  273 atgattatgctataaacacttaattaagctgt 304  Q
     || ||||||||||| | ||||||||||||||    
T  33965639 gtgtttatgctataagcgcttaattaagctgt 33965670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 176
Target Start/End: Original strand, 34414793 - 34414821
Alignment:
Q  148 cataagttgttttcagcttattttcataa 176  Q
    |||||||||||||||||||||||||||||    
T  34414793 cataagttgttttcagcttattttcataa 34414821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 176
Target Start/End: Original strand, 40321078 - 40321106
Alignment:
Q  148 cataagttgttttcagcttattttcataa 176  Q
    |||||||||||||||||||||||||||||    
T  40321078 cataagttgttttcagcttattttcataa 40321106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 265
Target Start/End: Complemental strand, 42530253 - 42530165
Alignment:
Q  177 gcttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttat 265  Q
    ||||| ||||||| |||| | |||||||||||| | | | | ||||||||||  |||||||||||||||||| ||| | |||| |||||    
T  42530253 gcttatgaaaacatcttacaacttatataaaaagaattttactttattttactttttattatagaaatagctaatatacaaacccttat 42530165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 47249464 - 47249524
Alignment:
Q  117 aagagcttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataag 177  Q
    |||| ||||||||||| ||| ||  ||| |||||||||||||||  |||||||||||||||    
T  47249464 aagaacttatgaaaaccacttatgacatgttcataagttgtttttggcttattttcataag 47249524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 176
Target Start/End: Complemental strand, 48991912 - 48991884
Alignment:
Q  148 cataagttgttttcagcttattttcataa 176  Q
    |||||||||||||||||||||||||||||    
T  48991912 cataagttgttttcagcttattttcataa 48991884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 179
Target Start/End: Original strand, 51206510 - 51206538
Alignment:
Q  151 aagttgttttcagcttattttcataagct 179  Q
    |||||||||||||||||||||||||||||    
T  51206510 aagttgttttcagcttattttcataagct 51206538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 54775145 - 54775074
Alignment:
Q  178 cttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagctta 250  Q
    |||||||||||| ||||||  |||||||||||| || ||| ||||||||| | ||| ||||||||||| ||||    
T  54775145 cttacgaaaacagcttataa-ttatataaaaatggtttgactttattttatcttttgttatagaaataactta 54775074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 179 - 300
Target Start/End: Original strand, 47527986 - 47528107
Alignment:
Q  179 ttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataaatgatt 278  Q
    |||| ||||||||||||| ||||| |||||| |||   ||||||||||| | || ||||||||||||||||||| |||||||||| |||||||| || ||    
T  47527986 ttacaaaaacaacttatagcttatgtaaaaacagttgaattttattttatccttaattatagaaatagcttatacataaacacttgtataataagtgttt 47528085  T
Q  279 atgctataaacacttaattaag 300  Q
    ||||||||| | ||| ||||||    
T  47528086 atgctataagcccttgattaag 47528107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 176 - 300
Target Start/End: Original strand, 27481344 - 27481468
Alignment:
Q  176 agcttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataaatg 275  Q
    |||||| ||||| |||||||| |||||||  ||| ||| ||| ||  ||||| | ||| |||||||||||||||||| ||||||||||||||||||||      
T  27481344 agcttatgaaaataacttatagcttatatggaaacagtttgacttcgttttatcctttgttatagaaatagcttatacataaacacttatataataaaca 27481443  T
Q  276 attatgctataaacacttaattaag 300  Q
     ||||||||||| ||| ||||||||    
T  27481444 tttatgctataagcacctaattaag 27481468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 176 - 300
Target Start/End: Complemental strand, 47004107 - 47003983
Alignment:
Q  176 agcttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataaatg 275  Q
    |||||| ||||||| ||||||  | ||||||||||||| ||| ||||||||| |  || |||||||||||||||| | |||||||||||||| |||||      
T  47004107 agcttatgaaaacagcttatagttcatataaaaatagtttgactttattttatctattgttatagaaatagcttacatataaacacttatatgataaaca 47004008  T
Q  276 attatgctataaacacttaattaag 300  Q
     || |||||||| ||||||||||||    
T  47004007 tttttgctataagcacttaattaag 47003983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 183 - 304
Target Start/End: Complemental strand, 49060553 - 49060432
Alignment:
Q  183 gaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataaatgattatgc 282  Q
    ||||| |||||||| |||||||||||||| | ||| |||||||||   ||| |||||||||||||||||| ||||| |||||||| ||||   ||||| |    
T  49060553 gaaaataacttatagcttatataaaaataatttgactttattttattttttgttatagaaatagcttatacataaatacttatatgataagccattatac 49060454  T
Q  283 tataaacacttaattaagctgt 304  Q
    |||||   ||||||||||||||    
T  49060453 tataagtgcttaattaagctgt 49060432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 322 - 376
Target Start/End: Complemental strand, 18810389 - 18810335
Alignment:
Q  322 ctttctgctagactgtgactatcagtagcttgacctcttcttgctctaacatgaa 376  Q
    |||||||| ||||| || ||||||||||||||||||||||||||||| |||||||    
T  18810389 ctttctgcaagactatggctatcagtagcttgacctcttcttgctctgacatgaa 18810335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 179
Target Start/End: Complemental strand, 46082127 - 46082066
Alignment:
Q  118 agagcttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataagct 179  Q
    ||||||||||||||||||| ||  |||   ||||||||||||||||||||||||||||||||    
T  46082127 agagcttatgaaaacaacttatgacatgaccataagttgttttcagcttattttcataagct 46082066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 124 - 175
Target Start/End: Original strand, 6226141 - 6226192
Alignment:
Q  124 tatgaaaacaactaattgcatattcataagttgttttcagcttattttcata 175  Q
    ||||||||||||||||  |||  |||||||||||||||||||||||||||||    
T  6226141 tatgaaaacaactaatgtcatgctcataagttgttttcagcttattttcata 6226192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 235 - 306
Target Start/End: Complemental strand, 28844447 - 28844376
Alignment:
Q  235 ttatagaaatagcttataaataaacacttatataataaatgattatgctataaacacttaattaagctgtat 306  Q
    |||| |||||| |||||| |||| |||||||| |||||  | |||||||||||||||||||||||| |||||    
T  28844447 ttatcgaaatatcttatacataagcacttatacaataagcgcttatgctataaacacttaattaagttgtat 28844376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 300
Target Start/End: Original strand, 753313 - 753378
Alignment:
Q  235 ttatagaaatagcttataaataaacacttatataataaatgattatgctataaacacttaattaag 300  Q
    ||||||||||||  |||| | || | ||||||| ||||||| ||||||||||||||||||||||||    
T  753313 ttatagaaatagtgtatacacaagcgcttatatgataaatgtttatgctataaacacttaattaag 753378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 264
Target Start/End: Complemental strand, 5373238 - 5373157
Alignment:
Q  183 gaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacactta 264  Q
    |||||||||||||| |||||||||||||  |  || ||||||||| | ||| ||||||||||||| |||| |||| ||||||    
T  5373238 gaaaacaacttataacttatataaaaatgtttggactttattttatcttttgttatagaaatagcatatacataagcactta 5373157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 176 - 257
Target Start/End: Original strand, 36874015 - 36874096
Alignment:
Q  176 agcttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataa 257  Q
    |||||| |||||||||||||| ||||||  |||||| |   | ||||||||| ||||| |||||||||||||||||| ||||    
T  36874015 agcttaagaaaacaacttatagcttataagaaaataattcaaatttattttatcatttcttatagaaatagcttatacataa 36874096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 267
Target Start/End: Original strand, 3610793 - 3610881
Alignment:
Q  179 ttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatat 267  Q
    |||||||||||||||||| ||||||  |||| ||| ||  || |||||| | ||| || ||||||||||||||| |||| |||||||||    
T  3610793 ttacgaaaacaacttatagcttataccaaaacagtttgccttcattttatcttttgttgtagaaatagcttatacataagcacttatat 3610881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 252
Target Start/End: Original strand, 5006559 - 5006635
Alignment:
Q  176 agcttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttata 252  Q
    |||||| |||||||| ||||| ||||||| |||| ||| ||| ||||||||| | ||| |||||| |||||||||||    
T  5006559 agcttatgaaaacaatttataccttatatgaaaacagtttgactttattttatcttttgttataggaatagcttata 5006635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 179
Target Start/End: Complemental strand, 7244742 - 7244710
Alignment:
Q  147 tcataagttgttttcagcttattttcataagct 179  Q
    |||||||||||||||||||||||||||||||||    
T  7244742 tcataagttgttttcagcttattttcataagct 7244710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 296
Target Start/End: Original strand, 9527140 - 9527260
Alignment:
Q  176 agcttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataaatg 275  Q
    |||||| ||||||||||||||  |||||| |||| ||| ||| |||||| || | ||| ||||||| ||||| |||| |||| ||||| ||| |||| ||    
T  9527140 agcttatgaaaacaacttatagtttatatgaaaacagtttgactttattatatcttttgttatagatatagcgtatatataagcacttgtatgataagtg 9527239  T
Q  276 attatgctataaacacttaat 296  Q
     |||| |||||  ||||||||    
T  9527240 tttatactataggcacttaat 9527260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 272
Target Start/End: Complemental strand, 44241879 - 44241784
Alignment:
Q  176 agcttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataa 272  Q
    |||||| ||||||||||||||  ||||| ||||||||| | | ||||||||| |  || ||||||||||| |||||| ||| |||||||||| ||||    
T  44241879 agcttatgaaaacaacttataggttatacaaaaatagt-taactttattttatctgttgttatagaaataacttatacatacacacttatatgataa 44241784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 180
Target Start/End: Original strand, 47134766 - 47134798
Alignment:
Q  148 cataagttgttttcagcttattttcataagctt 180  Q
    |||||||||||||||||||||||||||||||||    
T  47134766 cataagttgttttcagcttattttcataagctt 47134798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 176 - 267
Target Start/End: Complemental strand, 27492815 - 27492724
Alignment:
Q  176 agcttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatat 267  Q
    |||||| ||||||| |||||  ||||||| |||| ||| ||||||||||| | | ||| |||||||||||| ||||| ||||  ||||||||    
T  27492815 agcttatgaaaacatcttattacttatatgaaaaaagtttgattttatttgaacttttgttatagaaatagtttatacataagaacttatat 27492724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 199 - 266
Target Start/End: Original strand, 27626197 - 27626264
Alignment:
Q  199 ttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttata 266  Q
    |||||||| |||||| ||| ||||||||| | |||  ||||||||||||||||| ||||||| |||||    
T  27626197 ttatataataatagtttgactttattttagcttttgatatagaaatagcttatacataaacaattata 27626264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 183 - 306
Target Start/End: Original strand, 28340453 - 28340576
Alignment:
Q  183 gaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataaatgattatgc 282  Q
    |||||||||||||| |||| || |||| ||| ||| |||||||||   ||| ||  |||||||||||||| || || |||| ||  |||||   | ||||    
T  28340453 gaaaacaacttataacttacatgaaaacagtttgactttattttattgtttgttgaagaaatagcttatacattaatacttgtacgataaacactaatgc 28340552  T
Q  283 tataaacacttaattaagctgtat 306  Q
    ||||| ||||||||||||||||||    
T  28340553 tataagcacttaattaagctgtat 28340576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 183 - 273
Target Start/End: Complemental strand, 46082047 - 46081956
Alignment:
Q  183 gaaaacaacttatatcttatataaaaatagtgt-gattttattttaccatttattatagaaatagcttataaataaacacttatataataaa 273  Q
    |||||||||||||| ||||||| |||| ||| | || ||| ||||| | ||  |||||||||||||||||| |||| |||||||| ||||||    
T  46082047 gaaaacaacttataacttatatgaaaacagttttgactttgttttaactttcgttatagaaatagcttatatataatcacttatacaataaa 46081956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 270
Target Start/End: Complemental strand, 4591518 - 4591468
Alignment:
Q  220 ttattttaccatttattatagaaatagcttataaataaacacttatataat 270  Q
    |||||||| | ||| ||||||| |||||||||| |||||||||||||||||    
T  4591518 ttattttatcttttgttatagagatagcttatacataaacacttatataat 4591468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 176
Target Start/End: Original strand, 6552295 - 6552329
Alignment:
Q  142 catattcataagttgttttcagcttattttcataa 176  Q
    |||||||||||| ||||||||||||||||||||||    
T  6552295 catattcataagctgttttcagcttattttcataa 6552329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 296
Target Start/End: Complemental strand, 19624224 - 19624126
Alignment:
Q  198 cttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataaatgattatgctataaacacttaat 296  Q
    ||||||| |||||||| | | |||||||| || | | ||||||||||| |||||| |||| | ||||||| |||| || ||||||||| |||| |||||    
T  19624224 cttatatgaaaatagttttactttattttgccttatcttatagaaatatcttatatataagcccttatatgataagtgtttatgctattaacatttaat 19624126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 252
Target Start/End: Original strand, 3802232 - 3802265
Alignment:
Q  219 tttattttaccatttattatagaaatagcttata 252  Q
    ||||||||||| ||||||||||||||||||||||    
T  3802232 tttattttaccttttattatagaaatagcttata 3802265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 173
Target Start/End: Complemental strand, 24967154 - 24967097
Alignment:
Q  116 gaagagcttatgaaaacaactaattgcatattcataagttgttttcagcttattttca 173  Q
    |||||| ||||| |||||||| ||  ||||| || |||||||||||||||||||||||    
T  24967154 gaagagattatggaaacaacttataacatatccagaagttgttttcagcttattttca 24967097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 25670569 - 25670626
Alignment:
Q  122 cttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataagct 179  Q
    ||||||||||||||| ||  ||| || |||| |||||||||||||||||||| |||||    
T  25670569 cttatgaaaacaacttatgacatgttaataaattgttttcagcttattttcacaagct 25670626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 272
Target Start/End: Complemental strand, 27389344 - 27389307
Alignment:
Q  235 ttatagaaatagcttataaataaacacttatataataa 272  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  27389344 ttatagaaatagcttatacataaacacttatatgataa 27389307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 268
Target Start/End: Complemental strand, 28635071 - 28634978
Alignment:
Q  175 aagcttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatata 268  Q
    ||||||| |||||||| ||||| ||| ||| ||||||||   |||||| |||| | ||| ||| | ||||| |||||| |||||||||||||||    
T  28635071 aagcttatgaaaacaatttatagcttctatgaaaatagttatattttactttatcttttgttaaaaaaatatcttatagataaacacttatata 28634978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 299
Target Start/End: Complemental strand, 8445263 - 8445183
Alignment:
Q  219 tttattttaccatttattatagaaatagcttataaataaacacttatataataaatgattatgctataaacacttaattaa 299  Q
    ||||||||| | ||| ||||| |||||||||||||| || ||||||||| |||||   | ||||||||  |||||||||||    
T  8445263 tttattttatcttttgttataaaaatagcttataaacaagcacttatatgataaacactaatgctatacgcacttaattaa 8445183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 11048119 - 11048059
Alignment:
Q  117 aagagcttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataag 177  Q
    |||| ||||| ||||||||| ||  ||| |||||||| ||||||||||||||| |||||||    
T  11048119 aagaacttatcaaaacaacttatgacatgttcataagctgttttcagcttattctcataag 11048059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 20888381 - 20888425
Alignment:
Q  126 tgaaaacaactaattgcatattcataagttgttttcagcttattt 170  Q
    ||||||||||| ||  ||| |||||||||||||||||||||||||    
T  20888381 tgaaaacaacttatgccatgttcataagttgttttcagcttattt 20888425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 26935561 - 26935597
Alignment:
Q  143 atattcataagttgttttcagcttattttcataagct 179  Q
    ||||||||||| |||||||||||||||| ||||||||    
T  26935561 atattcataagctgttttcagcttatttccataagct 26935597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 179
Target Start/End: Original strand, 27378836 - 27378868
Alignment:
Q  147 tcataagttgttttcagcttattttcataagct 179  Q
    ||||||||||||||||| |||||||||||||||    
T  27378836 tcataagttgttttcagtttattttcataagct 27378868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 31338519 - 31338467
Alignment:
Q  185 aaacaacttatatcttatataaaaatagtgtgattttattttaccatttatta 237  Q
    |||||||||||| |||||||||||| ||| ||| ||||||||| | |||||||    
T  31338519 aaacaacttataacttatataaaaacagtttgactttattttatcttttatta 31338467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 170
Target Start/End: Original strand, 32791735 - 32791783
Alignment:
Q  122 cttatgaaaacaactaattgcatattcataagttgttttcagcttattt 170  Q
    |||||||||||||||||| |||| |||||| | |||||| |||||||||    
T  32791735 cttatgaaaacaactaatggcattttcatacgctgtttttagcttattt 32791783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 46)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 183 - 300
Target Start/End: Original strand, 8422896 - 8423011
Alignment:
Q  183 gaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataaatgattatgc 282  Q
    |||||||||||||| ||||||| |||| | ||  | ||||||||| | ||| ||||| |||||||||||| |||| ||| ||||| ||| ||||||||||    
T  8422896 gaaaacaacttatagcttatatgaaaacaatg--actttattttatctttttttataaaaatagcttatacataagcacatatatgatacatgattatgc 8422993  T
Q  283 tataaacacttaattaag 300  Q
    ||||||||||||||||||    
T  8422994 tataaacacttaattaag 8423011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 199 - 287
Target Start/End: Original strand, 7749155 - 7749243
Alignment:
Q  199 ttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataaatgattatgctataa 287  Q
    |||||||||||||||  |||||||||||  | ||||||||||||||||| |||| ||||||||||||||  ||||   |||||||||||    
T  7749155 ttatataaaaatagttcgattttattttctcttttattatagaaatagcgtatacataaacacttatatggtaaacacttatgctataa 7749243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 176 - 296
Target Start/End: Complemental strand, 24444058 - 24443938
Alignment:
Q  176 agcttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataaatg 275  Q
    |||||| |||||||||||||| ||||||| ||||| || ||| |||||||||   ||| || ||||||| ||||||| ||||  |||||||| |||| ||    
T  24444058 agcttatgaaaacaacttatagcttatatgaaaattgtttgaatttattttatattttgttgtagaaatcgcttatacataagaacttatatgataagtg 24443959  T
Q  276 attatgctataaacacttaat 296  Q
     ||||||||||| | ||||||    
T  24443958 cttatgctataagcgcttaat 24443938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 221 - 300
Target Start/End: Original strand, 40709475 - 40709554
Alignment:
Q  221 tattttaccatttattatagaaatagcttataaataaacacttatataataaatgattatgctataaacacttaattaag 300  Q
    ||||||| | ||| ||||||||| ||||||||||||| |||||||||| ||| || ||||| ||||| ||||||||||||    
T  40709475 tattttatcttttgttatagaaacagcttataaataagcacttatatattaagtggttatgatataagcacttaattaag 40709554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 267
Target Start/End: Complemental strand, 4071892 - 4071812
Alignment:
Q  186 aacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatat 267  Q
    ||||||||||| ||||||| |||||| | ||| ||||||||| | ||| |||||||||||| ||||| ||||||||||||||    
T  4071892 aacaacttatagcttatatgaaaataatttgactttattttatcttttgttatagaaatag-ttatatataaacacttatat 4071812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 300
Target Start/End: Complemental strand, 24929506 - 24929389
Alignment:
Q  183 gaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataaatgattatgc 282  Q
    |||||||||||||| ||| ||| |||| |||  || ||||||||| | ||| |||||||||||| | ||| | ||||| |||||| ||||  |||||||     
T  24929506 gaaaacaacttatagcttttatgaaaacagttagactttattttatcttttgttatagaaatagttcatacaaaaacaattatatgataagagattatgt 24929407  T
Q  283 tataaacacttaattaag 300  Q
    |||||||||| |||||||    
T  24929406 tataaacactcaattaag 24929389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 179
Target Start/End: Original strand, 33534148 - 33534209
Alignment:
Q  118 agagcttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataagct 179  Q
    ||||||||||||||||| |  |  ||||| ||||||||||||||||||||||||||||||||    
T  33534148 agagcttatgaaaacaaattgtgacatatccataagttgttttcagcttattttcataagct 33534209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 176 - 272
Target Start/End: Original strand, 24160545 - 24160641
Alignment:
Q  176 agcttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataa 272  Q
    |||||| |||||||||||||| |||| || |||||||| ||| ||||| ||| | ||| ||||||||| |||||||  |||| ||||||||| ||||    
T  24160545 agcttatgaaaacaacttatagcttacatgaaaatagtttgaatttatattatcttttgttatagaaaaagcttatttataagcacttatatgataa 24160641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 127 - 177
Target Start/End: Complemental strand, 25332858 - 25332807
Alignment:
Q  127 gaaaacaactaattgcat-attcataagttgttttcagcttattttcataag 177  Q
    |||||||||| || |||| |||||||||||||||||||||||||||||||||    
T  25332858 gaaaacaacttatggcattattcataagttgttttcagcttattttcataag 25332807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 273
Target Start/End: Complemental strand, 36734890 - 36734816
Alignment:
Q  199 ttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataaa 273  Q
    |||||| |||||||| ||| ||||||||||| ||| ||||||||| || ||||| |||| ||||||||| |||||    
T  36734890 ttatatgaaaatagtttgactttattttaccttttgttatagaaagagattatacataagcacttatatgataaa 36734816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 265
Target Start/End: Original strand, 42321936 - 42322018
Alignment:
Q  183 gaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttat 265  Q
    ||||||||||||||  |||||| |||| | | ||| ||||||||| ||||| ||||| |||||||||||  ||||||||||||    
T  42321936 gaaaacaacttataatttatatgaaaacaatttgactttattttatcatttgttataaaaatagcttattcataaacacttat 42322018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 176
Target Start/End: Complemental strand, 49219226 - 49219172
Alignment:
Q  122 cttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataa 176  Q
    ||||||||||||| |||| |||| | ||||||||||||||||||||||| |||||    
T  49219226 cttatgaaaacaattaatagcatctccataagttgttttcagcttatttccataa 49219172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 219 - 272
Target Start/End: Original strand, 969438 - 969491
Alignment:
Q  219 tttattttaccatttattatagaaatagcttataaataaacacttatataataa 272  Q
    ||||||||||| |||||||||||||| ||||||| |||| ||||||||| ||||    
T  969438 tttattttaccttttattatagaaattgcttatagataagcacttatatgataa 969491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 9843231 - 9843284
Alignment:
Q  117 aagagcttatgaaaacaactaattgcatattcataagttgttttcagcttattt 170  Q
    ||||| ||| |||||||||||||  ||||| |||||||||||||||||||||||    
T  9843231 aagagattaagaaaacaactaatcacatatccataagttgttttcagcttattt 9843284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 112 - 177
Target Start/End: Original strand, 28614781 - 28614846
Alignment:
Q  112 ttttgaagagcttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataag 177  Q
    |||||||||||||||| |||||| | ||  ||||| |||||| | |||||||||||||||||||||    
T  28614781 ttttgaagagcttatggaaacaatttatgacatatccataagctcttttcagcttattttcataag 28614846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 206 - 303
Target Start/End: Complemental strand, 47970308 - 47970211
Alignment:
Q  206 aaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataaatgattatgctataaacacttaattaagctg 303  Q
    |||||||| ||| || |||||| | ||| |||||||||||||||||| |||| ||||||||| | || |  ||| |||||| |||||||| |||||||    
T  47970308 aaaatagtttgacttcattttatcttttgttatagaaatagcttatacataagcacttatatgacaagtccttacgctatacacacttaagtaagctg 47970211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 299
Target Start/End: Complemental strand, 4471148 - 4471068
Alignment:
Q  219 tttattttaccatttattatagaaatagcttataaataaacacttatataataaatgattatgctataaacacttaattaa 299  Q
    ||||||||| | ||| ||||| |||||| ||||  |||| |||||||||||||| || ||||||||||| || ||||||||    
T  4471148 tttattttatcttttgttataaaaatagtttatgcataagcacttatataataattgcttatgctataagcagttaattaa 4471068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 270
Target Start/End: Original strand, 46013296 - 46013444
Alignment:
Q  122 cttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataagcttacgaaaacaacttatatcttatataaaaatagtgtgatttt 221  Q
    |||||||||| |||| || |||| || ||||||||| |||| ||||| ||| ||||||    |  | |||||||| |||||||||||| ||| ||| |||    
T  46013296 cttatgaaaagaacttatggcatgttgataagttgtcttcaacttatattcttaagctcttcaggataacttataacttatataaaaacagtttgacttt 46013395  T
Q  222 attttaccatttattatagaaatagcttataaataaacacttatataat 270  Q
    |||||| | ||| ||  |||||||| ||| | |||||||||||| ||||    
T  46013396 attttatcttttgttccagaaatagtttacacataaacacttatttaat 46013444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 192 - 287
Target Start/End: Original strand, 43372035 - 43372130
Alignment:
Q  192 ttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataaatgattatgctataa 287  Q
    ||||| |||||||||||| ||| ||| | ||||||| | ||| ||||| ||||| |||||   |||||||||||||  |||||| |||||||||||    
T  43372035 ttatagcttatataaaaacagtttgactgtattttatcttttgttataaaaataccttatgtttaaacacttatatggtaaatgcttatgctataa 43372130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 141 - 180
Target Start/End: Complemental strand, 43824351 - 43824312
Alignment:
Q  141 gcatattcataagttgttttcagcttattttcataagctt 180  Q
    |||| ||||||||||||||||||||||||| |||||||||    
T  43824351 gcatgttcataagttgttttcagcttatttccataagctt 43824312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 183 - 302
Target Start/End: Complemental strand, 49219152 - 49219033
Alignment:
Q  183 gaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataaatgattatgc 282  Q
    |||||||||||||| ||||||| |||||| | ||| |||||||||   ||| ||||||||||| ||||||  ||| |||| |||| ||||  |   ||||    
T  49219152 gaaaacaacttatagcttatatgaaaataatttgactttattttatattttgttatagaaataacttatacctaaccactcatatgataagcgccaatgc 49219053  T
Q  283 tataaacacttaattaagct 302  Q
    ||||| ||||||| ||||||    
T  49219052 tataagcacttaactaagct 49219033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 185 - 272
Target Start/End: Complemental strand, 53943617 - 53943531
Alignment:
Q  185 aaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataa 272  Q
    ||||||||||||  |||||| |||| ||| ||||||||||| | | ||| ||||| |||| |||||||||||| |||||||| |||||    
T  53943617 aaacaacttatagtttatatgaaaacagt-tgattttatttcatcctttgttataaaaatggcttataaataagcacttatacaataa 53943531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 176
Target Start/End: Complemental strand, 1312932 - 1312874
Alignment:
Q  118 agagcttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataa 176  Q
    |||| ||| |||||||||| ||| |||||||||||  |||||||||||||||| |||||    
T  1312932 agagtttacgaaaacaacttattacatattcataaactgttttcagcttatttccataa 1312874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 162
Target Start/End: Original strand, 27616277 - 27616327
Alignment:
Q  112 ttttgaagagcttatgaaaacaactaattgcatattcataagttgttttca 162  Q
    ||||||||||||||||||||||||  || |||| | |||||||||||||||    
T  27616277 ttttgaagagcttatgaaaacaacgcatggcatgtccataagttgttttca 27616327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 49032100 - 49032146
Alignment:
Q  176 agcttacgaaaacaa-cttatatcttatataaaaatagtgtgatttt 221  Q
    |||||| |||||||| |||||||||||||| ||||||||||||||||    
T  49032100 agcttatgaaaacaagcttatatcttatatgaaaatagtgtgatttt 49032146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 250
Target Start/End: Complemental strand, 50746012 - 50745946
Alignment:
Q  184 aaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagctta 250  Q
    |||||||||| ||  ||||||||||| ||| ||||||||||||| | ||| ||||| ||||||||||    
T  50746012 aaaacaacttgtagtttatataaaaacagtttgattttattttatcttttgttataaaaatagctta 50745946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 52315173 - 52315235
Alignment:
Q  116 gaagagcttatgaaaacaactaattgcat-attcataagttgttttcagcttattttcataag 177  Q
    ||||| ||||| ||||||||| ||  ||| |||||||||||| ||||||||||||||||||||    
T  52315173 gaagaacttatcaaaacaacttatcacattattcataagttgctttcagcttattttcataag 52315235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 250
Target Start/End: Complemental strand, 52735142 - 52735068
Alignment:
Q  176 agcttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagctta 250  Q
    |||||||||||||||| |||| ||||||| ||| || | ||| ||||||||| | ||| ||| ||||||||||||    
T  52735142 agcttacgaaaacaacatataacttatatgaaagtaatttgactttattttatcttttgttacagaaatagctta 52735068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 180
Target Start/End: Complemental strand, 56055817 - 56055779
Alignment:
Q  142 catattcataagttgttttcagcttattttcataagctt 180  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  56055817 catattcataagttgtttttatcttattttcataagctt 56055779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 1137799 - 1137742
Alignment:
Q  122 cttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataagct 179  Q
    |||||||||||| || ||  ||| |||||||||||||||||| |||||| ||||||||    
T  1137799 cttatgaaaacatcttatgacatgttcataagttgttttcagtttatttccataagct 1137742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 179
Target Start/End: Complemental strand, 17884131 - 17884098
Alignment:
Q  146 ttcataagttgttttcagcttattttcataagct 179  Q
    |||||||||||||||||||| |||||||||||||    
T  17884131 ttcataagttgttttcagctaattttcataagct 17884098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 252
Target Start/End: Complemental strand, 21953278 - 21953217
Alignment:
Q  191 cttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttata 252  Q
    |||||| |||||||||||| ||| ||| |||||||| || ||| |||||||||||| |||||    
T  21953278 cttatagcttatataaaaagagtttgactttattttcccttttgttatagaaatagtttata 21953217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 175
Target Start/End: Complemental strand, 24747382 - 24747353
Alignment:
Q  146 ttcataagttgttttcagcttattttcata 175  Q
    ||||||||||||||||||||||||||||||    
T  24747382 ttcataagttgttttcagcttattttcata 24747353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 267
Target Start/End: Complemental strand, 27406049 - 27405980
Alignment:
Q  198 cttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatat 267  Q
    |||||||  ||||||| ||  ||||||||| | |||| ||||||||||| |||| |||||||||||||||    
T  27406049 cttatatgcaaatagtttgcctttattttatcttttactatagaaatagtttatgaataaacacttatat 27405980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 300
Target Start/End: Complemental strand, 30024677 - 30024596
Alignment:
Q  219 tttattttaccatttattatagaaatagcttataaataaacacttatataataaatgattatgctataaacacttaattaag 300  Q
    ||||||||| | ||| ||||||||||| |||||  ||||  |||||||| ||||| | || | |||||||||||||||||||    
T  30024677 tttattttatcttttgttatagaaataacttatgcataagtacttatatgataaacgcttctactataaacacttaattaag 30024596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 179
Target Start/End: Complemental strand, 42461314 - 42461281
Alignment:
Q  146 ttcataagttgttttcagcttattttcataagct 179  Q
    ||||||||||| ||||||||||||||||||||||    
T  42461314 ttcataagttgatttcagcttattttcataagct 42461281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 46110290 - 46110233
Alignment:
Q  122 cttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataagct 179  Q
    ||||||||||||||| ||   ||| ||||||||||||||||||||||||  |||||||    
T  46110290 cttatgaaaacaacttatgatatactcataagttgttttcagcttatttctataagct 46110233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 179
Target Start/End: Complemental strand, 47146025 - 47145992
Alignment:
Q  146 ttcataagttgttttcagcttattttcataagct 179  Q
    ||||||||||||||||| ||||||||||||||||    
T  47146025 ttcataagttgttttcaccttattttcataagct 47145992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 264
Target Start/End: Original strand, 51044552 - 51044597
Alignment:
Q  219 tttattttaccatttattatagaaatagcttataaataaacactta 264  Q
    ||||||||| | ||| |||||||||||||||||| |||||||||||    
T  51044552 tttattttatcttttgttatagaaatagcttatacataaacactta 51044597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 167
Target Start/End: Original strand, 54327452 - 54327481
Alignment:
Q  138 attgcatattcataagttgttttcagctta 167  Q
    ||||||||||||||||||||||||||||||    
T  54327452 attgcatattcataagttgttttcagctta 54327481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 1404398 - 1404350
Alignment:
Q  220 ttattttaccatttattatagaaatagcttataaataaacacttatata 268  Q
    |||||||| | |||||||||||||||||||||||| || || |||||||    
T  1404398 ttattttatcttttattatagaaatagcttataaaaaagcatttatata 1404350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 24929579 - 24929523
Alignment:
Q  123 ttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataagct 179  Q
    ||||| ||||| || || |||| ||||||| ||||||||||||||||| ||||||||    
T  24929579 ttatggaaacagcttatggcatgttcataaattgttttcagcttatttccataagct 24929523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 272
Target Start/End: Original strand, 30207621 - 30207716
Alignment:
Q  176 agcttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataa 272  Q
    |||||| |||||||||||||| ||||||| |||| ||| ||| |||||||||   ||| |||||||| || | |||| |||| ||||||||| ||||    
T  30207621 agcttatgaaaacaacttatagcttatatgaaaacagtttga-tttattttattttttgttatagaactaacatatacataagcacttatatgataa 30207716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 303
Target Start/End: Original strand, 35684261 - 35684305
Alignment:
Q  259 cacttatataataaatgattatgctataaacacttaattaagctg 303  Q
    ||||||||| ||||||  |||||||||| ||||||||||||||||    
T  35684261 cacttatatcataaatttttatgctatatacacttaattaagctg 35684305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 287
Target Start/End: Original strand, 39929854 - 39929922
Alignment:
Q  219 tttattttaccatttattatagaaatagcttataaataaacacttatataataaatgattatgctataa 287  Q
    ||||||||||| ||||| ||||||| | |||||| |||| |||||| || ||||||| ||||| |||||    
T  39929854 tttattttaccttttataatagaaacaacttatacataagcacttaaatgataaatgtttatgttataa 39929922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 287
Target Start/End: Original strand, 51555960 - 51556028
Alignment:
Q  219 tttattttaccatttattatagaaatagcttataaataaacacttatataataaatgattatgctataa 287  Q
    ||||||||| | ||| |||||  ||||||||||| |||| ||||||||| ||||||| ||||| |||||    
T  51555960 tttattttatcttttgttataataatagcttatacataagcacttatatgataaatggttatgttataa 51556028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 57)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 176 - 300
Target Start/End: Complemental strand, 4558818 - 4558694
Alignment:
Q  176 agcttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataaatg 275  Q
    |||||| | ||||| |||||| | ||||| |||||| | | | ||||||||| | |||||||||||||||||||||| ||||||||||| |||||||| |    
T  4558818 agcttatggaaacagcttatagcatatatgaaaataatttaactttattttatcttttattatagaaatagcttatacataaacacttacataataaacg 4558719  T
Q  276 attatgctataaacacttaattaag 300  Q
     ||||||||||| | | ||||||||    
T  4558718 tttatgctataagcgcgtaattaag 4558694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 176 - 300
Target Start/End: Complemental strand, 29973101 - 29972972
Alignment:
Q  176 agcttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataa-----t 270  Q
    |||||| |||||||||||||| ||||| | |||||||| ||| ||||||||||| | | ||| |||||||||||||| |||| |||||| || |     |    
T  29973101 agcttatgaaaacaacttatagcttatgtgaaaatagtttgactttattttaccttgtgttaaagaaatagcttatatataagcacttacatcacatggt 29973002  T
Q  271 aaatgattatgctataaacacttaattaag 300  Q
    || || |||||||||||||||| |||||||    
T  29973001 aagtgtttatgctataaacactcaattaag 29972972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 324 - 376
Target Start/End: Complemental strand, 3451248 - 3451196
Alignment:
Q  324 ttctgctagactgtgactatcagtagcttgacctcttcttgctctaacatgaa 376  Q
    |||||| ||||||||||| |||||||||||||||||||||||||| |||||||    
T  3451248 ttctgcaagactgtgactgtcagtagcttgacctcttcttgctctgacatgaa 3451196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 176 - 296
Target Start/End: Complemental strand, 35869857 - 35869737
Alignment:
Q  176 agcttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataaatg 275  Q
    |||||| |||||||||||||| ||||||| ||||| || ||| |||||||||   ||| || ||||||| ||||||| ||||  |||||||| |||| ||    
T  35869857 agcttatgaaaacaacttatagcttatatgaaaattgtttgaatttattttatattttgttgtagaaatcgcttatacataagaacttatatgataagtg 35869758  T
Q  276 attatgctataaacacttaat 296  Q
     ||||||||||| | ||||||    
T  35869757 cttatgctataagcgcttaat 35869737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 198 - 296
Target Start/End: Original strand, 3645888 - 3645986
Alignment:
Q  198 cttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataaatgattatgctataaacacttaat 296  Q
    ||||||| |||||||| ||||||| |||||   ||| |||||||||||||||||| | || ||||||||| |||||   |||||||||||||| |||||    
T  3645888 cttatatgaaaatagtttgattttgttttatattttcttatagaaatagcttatacacaagcacttatatgataaacacttatgctataaacatttaat 3645986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 251
Target Start/End: Complemental strand, 926561 - 926432
Alignment:
Q  123 ttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataagcttacgaaaacaacttatatcttatataaaaatag-tgtgatttt 221  Q
    |||| ||||||||| ||  ||| ||||||||  ||||||||||||||| || ||||||| ||||||||||||||  | ||| ||||| || | ||| |||    
T  926561 ttatcaaaacaacttatgacatgttcataagccgttttcagcttatttccacaagcttatgaaaacaacttatagataatacaaaaacagttttgacttt 926462  T
Q  222 attttaccatttattatagaaatagcttat 251  Q
    |||||| | | | |||||||||||||||||    
T  926461 attttatcttgtgttatagaaatagcttat 926432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 300
Target Start/End: Complemental strand, 12972817 - 12972752
Alignment:
Q  235 ttatagaaatagcttataaataaacacttatataataaatgattatgctataaacacttaattaag 300  Q
    |||| ||||||||||||| |||| ||||||||| ||||||| ||||||||||| | ||||||||||    
T  12972817 ttattgaaatagcttatacataagcacttatatgataaatgcttatgctataagcgcttaattaag 12972752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 252
Target Start/End: Original strand, 16210943 - 16211012
Alignment:
Q  183 gaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttata 252  Q
    |||||||||||||| ||||||| |||| | ||| | ||||||||| |||||| |||||||||||||||||    
T  16210943 gaaaacaacttatagcttatatgaaaacaatgtaactttattttatcatttactatagaaatagcttata 16211012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 272
Target Start/End: Original strand, 35534934 - 35535007
Alignment:
Q  199 ttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataa 272  Q
    ||||| ||||| ||| ||| ||||||||| | |||||||||||||||||||||| |||| ||||||||| ||||    
T  35534934 ttatacaaaaacagtttgactttattttaacttttattatagaaatagcttatatataagcacttatatgataa 35535007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 272
Target Start/End: Complemental strand, 38561739 - 38561650
Alignment:
Q  183 gaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataa 272  Q
    ||||||||||||||   || ||||||||||| ||| ||||||||| | ||| ||||| ||||| |||||| ||| |||||||||||||||    
T  38561739 gaaaacaacttatagtatagataaaaatagtttgactttattttatcttttgttatataaataacttatatatagacacttatataataa 38561650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 189 - 265
Target Start/End: Complemental strand, 3945281 - 3945205
Alignment:
Q  189 aacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttat 265  Q
    |||||||| |||||||||||||||  | ||||||||||| | ||| |||| |||||| |||||| ||||||||||||    
T  3945281 aacttatagcttatataaaaatagcttcattttattttatcttttgttattgaaataacttatatataaacacttat 3945205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 176 - 287
Target Start/End: Complemental strand, 11415174 - 11415063
Alignment:
Q  176 agcttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataaatg 275  Q
    |||||| ||||||| | |||| |||||||||||||| | ||| |||||| ||||  ||  || || ||| ||||||| || ||||||||||| |||| ||    
T  11415174 agcttatgaaaacagcgtataacttatataaaaataatttgactttattctacctcttgctaaagcaatggcttatacatgaacacttatatgataagtg 11415075  T
Q  276 attatgctataa 287  Q
    ||||||||||||    
T  11415074 attatgctataa 11415063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 118 - 177
Target Start/End: Complemental strand, 30389190 - 30389131
Alignment:
Q  118 agagcttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataag 177  Q
    ||||| |||||||| | |||||  ||| ||||||||||||||||||||||||||||||||    
T  30389190 agagcatatgaaaatagctaatgacatgttcataagttgttttcagcttattttcataag 30389131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 300
Target Start/End: Complemental strand, 5226576 - 5226498
Alignment:
Q  222 attttaccatttattatagaaatagcttataaataaacacttatataataaatgattatgctataaacacttaattaag 300  Q
    |||||| | ||| |||| ||||| | ||||| |||||||||||||| ||||||| |||||||||||||| || ||||||    
T  5226576 attttatcttttgttattgaaattgtttatacataaacacttatatgataaatgtttatgctataaacagttgattaag 5226498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 300
Target Start/End: Complemental strand, 34563240 - 34563146
Alignment:
Q  206 aaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataaatgattatgctataaacacttaattaag 300  Q
    ||||| || ||| ||||||||| | ||| | ||||||||| |||||| |||| ||||||||| ||||||| ||||||||||| |  |||||||||    
T  34563240 aaaattgtttgactttattttatcctttgtcatagaaataacttatatataagcacttatatgataaatgtttatgctataagcgtttaattaag 34563146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 252
Target Start/End: Original strand, 1470913 - 1470982
Alignment:
Q  183 gaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttata 252  Q
    ||||||| |||||| ||||||| ||| || | ||| ||||||||| | ||||||||||||||||||||||    
T  1470913 gaaaacagcttatagcttatatgaaagtaatttgactttattttatcttttattatagaaatagcttata 1470982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 304
Target Start/End: Complemental strand, 6918992 - 6918923
Alignment:
Q  235 ttatagaaatagcttataaataaacacttatataataaatgattatgctataaacacttaattaagctgt 304  Q
    ||||| |||||||||||| |||| ||||||||| |||||   |||||||||| |||||||| ||||||||    
T  6918992 ttataaaaatagcttatacataagcacttatatgataaacacttatgctatagacacttaagtaagctgt 6918923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 272
Target Start/End: Original strand, 11056724 - 11056813
Alignment:
Q  183 gaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataa 272  Q
    |||||||||||||| ||||||| ||||||||   | |||||||| || ||| |||||||||||||| ||  || ||||||||||| ||||    
T  11056724 gaaaacaacttatagcttatatgaaaatagttcaactttatttttccttttgttatagaaatagctcatgcatgaacacttatatgataa 11056813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 118 - 179
Target Start/End: Complemental strand, 30918203 - 30918143
Alignment:
Q  118 agagcttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataagct 179  Q
    |||||||||||||||||||  |  ||| ||||||||||||||||||||||||| ||||||||    
T  30918203 agagcttatgaaaacaacttgtgacat-ttcataagttgttttcagcttatttccataagct 30918143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 219 - 292
Target Start/End: Original strand, 33209313 - 33209386
Alignment:
Q  219 tttattttaccatttattatagaaatagcttataaataaacacttatataataaatgattatgctataaacact 292  Q
    ||||||||| | || ||||||||||||||||||  ||| |||||| ||| ||||||| |||||||| |||||||    
T  33209313 tttattttatctttcattatagaaatagcttatttatagacacttgtatgataaatgcttatgctagaaacact 33209386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 231 - 300
Target Start/End: Original strand, 42508668 - 42508737
Alignment:
Q  231 tttattatagaaatagcttataaataaacacttatataataaatgattatgctataaacacttaattaag 300  Q
    |||||||||||||||||  ||| |||||| ||||||| ||||||| ||||| || || ||||||||||||    
T  42508668 tttattatagaaatagccaatacataaacccttatatgataaatgtttatgttagaagcacttaattaag 42508737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 300
Target Start/End: Original strand, 43208242 - 43208307
Alignment:
Q  235 ttatagaaatagcttataaataaacacttatataataaatgattatgctataaacacttaattaag 300  Q
    |||||||||||||||||| ||||| |||||||| || || | |||| |||||| ||||||||||||    
T  43208242 ttatagaaatagcttatacataaatacttatatgatgaacgtttatactataagcacttaattaag 43208307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 287
Target Start/End: Complemental strand, 8062544 - 8062432
Alignment:
Q  176 agcttacgaaaacaacttatatcttatataaaaatagtgtga-ttttattttaccatttattatagaaatagcttataaataaacacttatataataaat 274  Q
    |||||| || |||| |||||| ||||||| |||| | | ||| |||| ||||| ||||  |||| ||||||||||||| |||||  ||||||| ||||||    
T  8062544 agcttatgagaacatcttatagcttatatgaaaacaatttgactttttttttatcattggttattgaaatagcttatagataaatgcttatatgataaat 8062445  T
Q  275 gattatgctataa 287  Q
    | |||||||||||    
T  8062444 gcttatgctataa 8062432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 118 - 185
Target Start/End: Complemental strand, 5069788 - 5069721
Alignment:
Q  118 agagcttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataagcttacgaa 185  Q
    |||||||||| ||||| || ||  ||| |||||||||  |||||||||||||||||||||||| ||||    
T  5069788 agagcttatggaaacatcttataacatgttcataagtcattttcagcttattttcataagctttcgaa 5069721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 118 - 177
Target Start/End: Complemental strand, 7111359 - 7111300
Alignment:
Q  118 agagcttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataag 177  Q
    ||||||||||||||||| | ||  ||||||| |||| |||||| ||||||||||||||||    
T  7111359 agagcttatgaaaacaattgatgacatattcgtaagctgtttttagcttattttcataag 7111300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 192 - 267
Target Start/End: Original strand, 11188221 - 11188296
Alignment:
Q  192 ttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatat 267  Q
    ||||| || ||||||||||||| || |||||||||| | ||| ||||||||| | |||||| |||| |||||||||    
T  11188221 ttataactaatataaaaatagtttggttttattttatcttttgttatagaaacaacttatacataagcacttatat 11188296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 230 - 297
Target Start/End: Original strand, 11476991 - 11477058
Alignment:
Q  230 atttattatagaaatagcttataaataaacacttatataataaatgattatgctataaacacttaatt 297  Q
    |||| ||| |||||||||||||| || | ||||||||| ||||| | ||||||||||| |||||||||    
T  11476991 atttgttacagaaatagcttatacattagcacttatatgataaaagcttatgctataagcacttaatt 11477058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 235 - 286
Target Start/End: Original strand, 26716545 - 26716596
Alignment:
Q  235 ttatagaaatagcttataaataaacacttatataataaatgattatgctata 286  Q
    |||||||| ||||||||| |||| |||||||||||||| || ||||||||||    
T  26716545 ttatagaagtagcttatacataagcacttatataataagtgtttatgctata 26716596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 176 - 247
Target Start/End: Original strand, 27728071 - 27728142
Alignment:
Q  176 agcttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagc 247  Q
    |||||| |||||||||| |||  |||||| |||||||| ||| ||||||||| | ||| |||||||||||||    
T  27728071 agcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatctttttttatagaaatagc 27728142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 250
Target Start/End: Original strand, 6864509 - 6864586
Alignment:
Q  176 agcttacgaaaacaacttatatcttatataaaaatagtgtgattttatttta-ccattta--ttatagaaatagctta 250  Q
    |||||| |||||||||||||| |||| || |||||||| ||| ||||||||| || ||||  ||||||||||||||||    
T  6864509 agcttatgaaaacaacttataacttacatgaaaatagtttgactttattttatccttttatgttatagaaatagctta 6864586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 272
Target Start/End: Original strand, 6918259 - 6918325
Alignment:
Q  206 aaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataa 272  Q
    |||| ||| ||| ||||||||| | ||||||||| |||||||||||| | |||||||||||| ||||    
T  6918259 aaaacagtttgactttattttatcttttattatataaatagcttatatacaaacacttatattataa 6918325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 265
Target Start/End: Complemental strand, 7646183 - 7646137
Alignment:
Q  219 tttattttaccatttattatagaaatagcttataaataaacacttat 265  Q
    ||||||||||| ||| |||||||||||||||||| |||| |||||||    
T  7646183 tttattttaccttttcttatagaaatagcttatacataaccacttat 7646137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 273
Target Start/End: Complemental strand, 8629070 - 8629032
Alignment:
Q  235 ttatagaaatagcttataaataaacacttatataataaa 273  Q
    ||||||||||||||||||||||| ||||||||| |||||    
T  8629070 ttatagaaatagcttataaataagcacttatatgataaa 8629032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 374
Target Start/End: Original strand, 26002999 - 26003049
Alignment:
Q  324 ttctgctagactgtgactatcagtagcttgacctcttcttgctctaacatg 374  Q
    |||||| |||||||| ||||||||||||||||| ||||| |||| ||||||    
T  26002999 ttctgcaagactgtggctatcagtagcttgaccccttctagctcgaacatg 26003049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 179
Target Start/End: Original strand, 26284805 - 26284835
Alignment:
Q  149 ataagttgttttcagcttattttcataagct 179  Q
    |||||||||||||||||||||||||||||||    
T  26284805 ataagttgttttcagcttattttcataagct 26284835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 252
Target Start/End: Original strand, 31315525 - 31315579
Alignment:
Q  198 cttatataaaaatagtgtgattttattttaccatttattatagaaatagcttata 252  Q
    |||| ||||||||||| ||| ||||||||| | ||||||||| ||||||||||||    
T  31315525 cttacataaaaatagtttgactttattttatcttttattataaaaatagcttata 31315579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 175
Target Start/End: Original strand, 32840968 - 32841022
Alignment:
Q  122 cttatgaaaacaactaattgcata-ttcataagttgttttcagcttattttcata 175  Q
    ||||||||||||||| ||  |||  ||||||||||||||||||||||||||||||    
T  32840968 cttatgaaaacaacttatgacattgttcataagttgttttcagcttattttcata 32841022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 288
Target Start/End: Original strand, 35298571 - 35298641
Alignment:
Q  219 tttattttaccatttattatagaaatagcttataaataaacacttatataat-aaatgattatgctataaa 288  Q
    ||||||||| | ||| |||  ||||||||||||| |||| ||||||||| || ||||||||||||||||||    
T  35298571 tttattttatcttttgttactgaaatagcttatacataagcacttatatgataaaatgattatgctataaa 35298641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 273
Target Start/End: Original strand, 39551258 - 39551356
Alignment:
Q  175 aagcttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataaa 273  Q
    ||||||| |||||||||||||| ||| ||| || | ||| |   ||||||||| | |||||||| ||| ||| ||||| |||||||||||||| |||||    
T  39551258 aagcttatgaaaacaacttatagcttgtatgaagacagtttagctttattttatcttttattatggaagtaggttatacataaacacttatatgataaa 39551356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 1664360 - 1664315
Alignment:
Q  219 tttattttaccatttattatagaaatagcttataaataaacactta 264  Q
    ||||||||||| ||| ||||| |||||||||||| |||||||||||    
T  1664360 tttattttaccttttgttataaaaatagcttatatataaacactta 1664315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 2594986 - 2595035
Alignment:
Q  128 aaaacaactaattgcatattcataagttgttttcagcttattttcataag 177  Q
    ||||||||| ||  ||| |||||||||||||||||||||||| |||||||    
T  2594986 aaaacaacttatgacatgttcataagttgttttcagcttattctcataag 2595035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 179
Target Start/End: Complemental strand, 8060760 - 8060699
Alignment:
Q  118 agagcttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataagct 179  Q
    ||||||||||||||||| | || | |  |||||||||| |||||||||||||| ||||||||    
T  8060760 agagcttatgaaaacaaattatggaaagttcataagttattttcagcttatttccataagct 8060699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 12851263 - 12851206
Alignment:
Q  122 cttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataagct 179  Q
    |||||||||||| || ||  ||| |||||||| ||||||| |||||||||||||||||    
T  12851263 cttatgaaaacagcttataacatgttcataagatgttttcggcttattttcataagct 12851206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 179
Target Start/End: Complemental strand, 20672813 - 20672780
Alignment:
Q  146 ttcataagttgttttcagcttattttcataagct 179  Q
    |||||||| |||||||||||||||||||||||||    
T  20672813 ttcataagctgttttcagcttattttcataagct 20672780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 252
Target Start/End: Complemental strand, 26479791 - 26479723
Alignment:
Q  183 gaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttata 252  Q
    |||||||| ||||||| |||||||||| ||| ||||||||||||| | || ||||||||| ||| |||||    
T  26479791 gaaaacaa-ttatatcatatataaaaacagtttgattttattttatctttgattatagaactagtttata 26479723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 300
Target Start/End: Complemental strand, 29699231 - 29699150
Alignment:
Q  219 tttattttaccatttattatagaaatagcttataaataaacacttatataataaatgattatgctataaacacttaattaag 300  Q
    ||||||||| | ||| ||||||||||| ||| || |||| || |||||| ||||||  ||||||||||| ||||||| ||||    
T  29699231 tttattttatcttttgttatagaaataacttgtacataagcatttatatgataaatatttatgctataagcacttaactaag 29699150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 179
Target Start/End: Complemental strand, 32288803 - 32288766
Alignment:
Q  142 catattcataagttgttttcagcttattttcataagct 179  Q
    |||||||| |||||||||| ||||||||||||||||||    
T  32288803 catattcaaaagttgtttttagcttattttcataagct 32288766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #48
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 177
Target Start/End: Original strand, 40728398 - 40728455
Alignment:
Q  120 agcttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataag 177  Q
    ||||||||||||||||| || |||| |||||||| | ||||||| |||||| ||||||    
T  40728398 agcttatgaaaacaacttatagcatgttcataagatattttcagtttatttccataag 40728455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #49
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 179
Target Start/End: Original strand, 42215089 - 42215122
Alignment:
Q  146 ttcataagttgttttcagcttattttcataagct 179  Q
    ||||||||||||||||||||||||| ||||||||    
T  42215089 ttcataagttgttttcagcttatttacataagct 42215122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #50
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 267
Target Start/End: Complemental strand, 1667022 - 1666974
Alignment:
Q  219 tttattttaccatttattatagaaatagcttataaataaacacttatat 267  Q
    ||||||| ||| ||| ||||| |||||||||||| ||||||||||||||    
T  1667022 tttatttgaccttttgttataaaaatagcttatatataaacacttatat 1666974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #51
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 267
Target Start/End: Original strand, 9541240 - 9541272
Alignment:
Q  235 ttatagaaatagcttataaataaacacttatat 267  Q
    ||||| |||||||||||||||||||||||||||    
T  9541240 ttataaaaatagcttataaataaacacttatat 9541272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #52
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 184 - 300
Target Start/End: Complemental strand, 10727209 - 10727093
Alignment:
Q  184 aaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataaatgattatgct 283  Q
    ||||||||||||| ||||| | |||| | | ||| ||||||| | | |||  ||||||||||||||||  |||| ||||||||| || ||   |||||||    
T  10727209 aaaacaacttataacttatgtgaaaacactttgaatttatttcatcttttgctatagaaatagcttatgcataagcacttatatgatgaacacttatgct 10727110  T
Q  284 ataaacacttaattaag 300  Q
    |||||  ||||||||||    
T  10727109 ataaatgcttaattaag 10727093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #53
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 272
Target Start/End: Original strand, 28769389 - 28769485
Alignment:
Q  176 agcttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataa 272  Q
    |||||| ||||||| |||||| ||||||  |||||||| ||| || ||||||   ||| |||||| ||||||||||| |||| || |||||| ||||    
T  28769389 agcttatgaaaacagcttatagcttataagaaaatagtttgacttaattttatagtttgttataggaatagcttatacataagcatttatatgataa 28769485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #54
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 272
Target Start/End: Complemental strand, 30013238 - 30013143
Alignment:
Q  176 agcttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataa 272  Q
    |||||| ||||||| |||||| |||||||  ||| ||| ||| || |||| ||| ||| ||||| |||||||||| | |||| ||||||||||||||    
T  30013238 agcttatgaaaacagcttatagcttatatggaaacagtttgacttaatttgaccttttgttata-aaatagcttaaacataagcacttatataataa 30013143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #55
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 34849124 - 34849072
Alignment:
Q  175 aagcttacgaaaacaacttatatcttatataaaaatagtgtgattttatttta 227  Q
    ||||||| || |||| ||||||||||||| ||||||| ||||| |||||||||    
T  34849124 aagcttatgataacagcttatatcttatacaaaaataatgtgactttatttta 34849072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #56
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 184 - 300
Target Start/End: Original strand, 35453681 - 35453797
Alignment:
Q  184 aaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataaatgattatgct 283  Q
    |||||||| |||| ||||||| ||| |||| | | ||||||||| | ||| || |||||| || ||||| ||||  |||||||| | ||  | |||||||    
T  35453681 aaaacaacctataacttatatgaaactagtttaactttattttatcttttgttgtagaaacagattatatataagtacttatatgacaagcgcttatgct 35453780  T
Q  284 ataaacacttaattaag 300  Q
    |||| ||||||||||||    
T  35453781 ataatcacttaattaag 35453797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #57
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 267
Target Start/End: Complemental strand, 40356848 - 40356800
Alignment:
Q  219 tttattttaccatttattatagaaatagcttataaataaacacttatat 267  Q
    ||||||||| | ||||||||| |||||||||||| |||| |||||||||    
T  40356848 tttattttatcttttattatataaatagcttatagataagcacttatat 40356800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 198 - 300
Target Start/End: Original strand, 1146 - 1248
Alignment:
Q  198 cttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataaatgattatgctataaacacttaatt 297  Q
    ||||||| | |||||| ||| ||||||||| | ||| |||||||||||||||||| |||| ||||||||| ||| | | |||||||||||  ||||||||    
T  1146 cttatatgagaatagtttgactttattttatcttttgttatagaaatagcttatacataagcacttatatgatagacgtttatgctataagtacttaatt 1245  T
Q  298 aag 300  Q
    |||    
T  1246 aag 1248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 198 - 300
Target Start/End: Complemental strand, 2829 - 2727
Alignment:
Q  198 cttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataaatgattatgctataaacacttaatt 297  Q
    ||||||| | |||||| ||| ||||||||| | ||| |||||||||||||||||| |||| ||||||||| ||| | | |||||||||||  ||||||||    
T  2829 cttatatgagaatagtttgactttattttatcttttgttatagaaatagcttatacataagcacttatatgatagacgtttatgctataagtacttaatt 2730  T
Q  298 aag 300  Q
    |||    
T  2729 aag 2727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 38)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 267
Target Start/End: Original strand, 35135725 - 35135803
Alignment:
Q  189 aacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatat 267  Q
    |||||||| ||||||| |||||||| ||| ||||||||| | ||| ||||||||||| |||||| ||||||||||||||    
T  35135725 aacttatagcttatatgaaaatagtttgactttattttatcttttgttatagaaatatcttatacataaacacttatat 35135803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 179
Target Start/End: Complemental strand, 8090027 - 8089966
Alignment:
Q  118 agagcttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataagct 179  Q
    ||||||||||||||||||| ||   |||||| |||| |||||||||||||||||||||||||    
T  8090027 agagcttatgaaaacaacttatgatatattcctaagctgttttcagcttattttcataagct 8089966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 265
Target Start/End: Complemental strand, 10907391 - 10907310
Alignment:
Q  184 aaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttat 265  Q
    |||||| ||||||  |||||| ||| |||| ||||||||||||||||||   |||||||||| |||||| ||||||||||||    
T  10907391 aaaacagcttatagattatatgaaagtagtttgattttattttaccattagctatagaaataacttatacataaacacttat 10907310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 253
Target Start/End: Complemental strand, 14295526 - 14295449
Alignment:
Q  176 agcttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataa 253  Q
    |||||||||||||| |||||| ||||||| |||| ||| ||| ||||||||| | ||| |||||||||||||| ||||    
T  14295526 agcttacgaaaacagcttatagcttatatgaaaacagtttgactttattttatcttttgttatagaaatagctaataa 14295449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 231 - 299
Target Start/End: Original strand, 6738512 - 6738580
Alignment:
Q  231 tttattatagaaatagcttataaataaacacttatataataaatgattatgctataaacacttaattaa 299  Q
    |||||||| ||||||||||||| ||||  |||||||| |||| || ||||||||||||| |||||||||    
T  6738512 tttattattgaaatagcttatacataagtacttatatgataagtgtttatgctataaactcttaattaa 6738580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 219 - 287
Target Start/End: Original strand, 29115306 - 29115374
Alignment:
Q  219 tttattttaccatttattatagaaatagcttataaataaacacttatataataaatgattatgctataa 287  Q
    ||||||||||| ||| || ||||||||||||||| |||| ||||| ||| ||||||| |||||||||||    
T  29115306 tttattttaccttttgttgtagaaatagcttatacataagcacttttatgataaatgtttatgctataa 29115374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 176 - 300
Target Start/End: Complemental strand, 33961723 - 33961599
Alignment:
Q  176 agcttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataaatg 275  Q
    ||||||||||||||||||| | || ||||||||| |   ||  | ||||||| | ||| ||||| || || |||||| | |||||||||||| |||| ||    
T  33961723 agcttacgaaaacaacttaaagctcatataaaaacaaattggctatattttatcctttgttataaaagtaccttatacaaaaacacttatatgataagtg 33961624  T
Q  276 attatgctataaacacttaattaag 300  Q
     |||| |||||||||||||||||||    
T  33961623 cttatactataaacacttaattaag 33961599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 235 - 303
Target Start/End: Complemental strand, 34975339 - 34975271
Alignment:
Q  235 ttatagaaatagcttataaataaacacttatataataaatgattatgctataaacacttaattaagctg 303  Q
    |||||||||||| ||||| |||| |||| | ||||||| || |||||||| ||||||||||||||||||    
T  34975339 ttatagaaatagtttatacataatcactcaaataataactgcttatgctacaaacacttaattaagctg 34975271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 231 - 306
Target Start/End: Original strand, 14716575 - 14716650
Alignment:
Q  231 tttattatagaaatagcttataaataaacacttatataataaatgattatgctataaacacttaattaagctgtat 306  Q
    |||| |||||||| | |||||| |||| ||||||||| | ||||  ||||||||||| ||||||||||||||||||    
T  14716575 tttactatagaaacaacttatacataagcacttatatgacaaatccttatgctataagcacttaattaagctgtat 14716650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 176 - 267
Target Start/End: Original strand, 18704086 - 18704176
Alignment:
Q  176 agcttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatat 267  Q
    |||||| |||||||||||||| |||||||||||||||  ||| |||| |||| | ||| ||||||||||| |||||| ||||  ||||||||    
T  18704086 agcttatgaaaacaacttatagcttatataaaaatagcttgacttta-tttatcttttgttatagaaataacttatacataagaacttatat 18704176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 235 - 298
Target Start/End: Complemental strand, 29588841 - 29588778
Alignment:
Q  235 ttatagaaatagcttataaataaacacttatataataaatgattatgctataaacacttaatta 298  Q
    |||||||||||||||||| |||| ||||||||||| || || ||||||||||| | ||||||||    
T  29588841 ttatagaaatagcttatacataagcacttatataaaaagtgtttatgctataagcgcttaatta 29588778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 177 - 300
Target Start/End: Original strand, 39257438 - 39257560
Alignment:
Q  177 gcttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataaatga 276  Q
    ||||| ||||||||||||||  |||||| ||||  || ||| ||||||||||| ||| ||||||| ||||| |||| |||| |||||| || ||||  |     
T  39257438 gcttatgaaaacaacttatagtttatatgaaaag-gtttgactttattttaccttttgttatagagatagcatatacataagcacttacatgataatagt 39257536  T
Q  277 ttatgctataaacacttaattaag 300  Q
    ||||||||||| | ||||||||||    
T  39257537 ttatgctataagcgcttaattaag 39257560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 300
Target Start/End: Complemental strand, 26516276 - 26516194
Alignment:
Q  218 ttttattttaccatttattatagaaatagcttataaataaacacttatataataaatgattatgctataaacacttaattaag 300  Q
    |||||||||| | ||| || ||||||||||||||| |||| ||||||||| ||||  | ||||||||||| | ||||||||||    
T  26516276 ttttattttatcttttgttttagaaatagcttatacataagcacttatatgataagcgcttatgctataagcgcttaattaag 26516194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 219 - 296
Target Start/End: Original strand, 20982228 - 20982305
Alignment:
Q  219 tttattttaccatttattatagaaatagcttataaataaacacttatataataaatgattatgctataaacacttaat 296  Q
    ||||||||| | ||| |||||||||||||||||| |||| ||||||||| ||||    ||||||||||| ||||||||    
T  20982228 tttattttatcctttgttatagaaatagcttatacataagcacttatatgataagcacttatgctataagcacttaat 20982305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 7907975 - 7907911
Alignment:
Q  116 gaagagcttatgaaaacaac-taattgcatattcataagttgttttcagcttattttcataagct 179  Q
    ||||| |||||||||||||| || |   ||||||||||||||||||||||||| |||||||||||    
T  7907975 gaagaacttatgaaaacaacgtactgaaatattcataagttgttttcagcttaatttcataagct 7907911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 294
Target Start/End: Complemental strand, 14331367 - 14331256
Alignment:
Q  183 gaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaata-gcttataaataaacacttatataataaatgattatg 281  Q
    ||||| |||||||| |||||||||||||| | ||| |||| |||| | |||  |||||||||| ||||||| || | ||||||||| |||| || |||||    
T  14331367 gaaaataacttataacttatataaaaataatctgacttta-tttatcttttgctatagaaataggcttatacattagcacttatatcataattggttatg 14331269  T
Q  282 ctataaacactta 294  Q
    |||||| ||||||    
T  14331268 ctataagcactta 14331256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 272
Target Start/End: Complemental strand, 35960433 - 35960338
Alignment:
Q  176 agcttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataa 272  Q
    |||||| |||| |||||||||  |||||| ||| |||| ||| ||||||||| | |||||||||||||||| ||||  ||||| |||||||| ||||    
T  35960433 agcttatgaaatcaacttatagtttatatgaaa-tagtttgactttattttatcttttattatagaaatagtttatgcataaatacttatatgataa 35960338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 2568751 - 2568688
Alignment:
Q  116 gaagagcttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataagct 179  Q
    ||||| |||||||||||| || ||  |||||||||||||| |||| ||||||||||||| ||||    
T  2568751 gaagaacttatgaaaacagcttatgacatattcataagttatttttagcttattttcattagct 2568688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 118 - 177
Target Start/End: Complemental strand, 4619798 - 4619739
Alignment:
Q  118 agagcttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataag 177  Q
    ||||||||||||||||||||||  ||| |||||||| || ||||| ||||||| ||||||    
T  4619798 agagcttatgaaaacaactaatgacatgttcataagctggtttcaccttatttccataag 4619739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 288
Target Start/End: Original strand, 7096207 - 7096289
Alignment:
Q  206 aaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataaatgattatgctataaa 288  Q
    ||||| || ||| ||||||||| | ||| |||||||||||||||||| |||| ||||| ||| || ||||  |||||||||||    
T  7096207 aaaatggtttgactttattttatcttttgttatagaaatagcttatacataagcacttgtatgattaatgcatatgctataaa 7096289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 272
Target Start/End: Complemental strand, 19177497 - 19177403
Alignment:
Q  178 cttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataa 272  Q
    ||||||||||||||||||| ||||||| |||| |||  || || |||||| | | | || ||||||||| ||||| |||| ||||||||| ||||    
T  19177497 cttacgaaaacaacttatagcttatatgaaaacagttagacttaattttatcttctgttgtagaaatagtttatacataagcacttatatgataa 19177403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 10125701 - 10125758
Alignment:
Q  122 cttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataagct 179  Q
    |||||| |||||||| ||  ||| || ||||| |||||||||||||||||||||||||    
T  10125701 cttatgtaaacaacttatgacatgttgataaggtgttttcagcttattttcataagct 10125758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 179
Target Start/End: Original strand, 13604828 - 13604889
Alignment:
Q  118 agagcttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataagct 179  Q
    |||||||||||||||| || ||  ||| | |||| |||||||||| ||||||||||||||||    
T  13604828 agagcttatgaaaacagcttatgacatgtccatacgttgttttcaacttattttcataagct 13604889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 179
Target Start/End: Original strand, 17258890 - 17258923
Alignment:
Q  146 ttcataagttgttttcagcttattttcataagct 179  Q
    |||||||| |||||||||||||||||||||||||    
T  17258890 ttcataagctgttttcagcttattttcataagct 17258923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 209
Target Start/End: Original strand, 18543246 - 18543279
Alignment:
Q  176 agcttacgaaaacaacttatatcttatataaaaa 209  Q
    |||||| |||||||||||||||||||||||||||    
T  18543246 agcttatgaaaacaacttatatcttatataaaaa 18543279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 179
Target Start/End: Original strand, 33533542 - 33533579
Alignment:
Q  142 catattcataagttgttttcagcttattttcataagct 179  Q
    ||||||||||||||||||||| ||||||| ||||||||    
T  33533542 catattcataagttgttttcaacttatttccataagct 33533579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 162
Target Start/End: Complemental strand, 34205341 - 34205288
Alignment:
Q  109 ctattttgaagagcttatgaaaacaactaattgcatattcataagttgttttca 162  Q
    |||||||| |||||||||| |||||||| ||  ||| |||||||||||||||||    
T  34205341 ctattttggagagcttatggaaacaacttatgtcatgttcataagttgttttca 34205288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 267
Target Start/End: Original strand, 37063146 - 37063215
Alignment:
Q  198 cttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatat 267  Q
    ||||||| |||||||| ||| ||||||||| | ||| |||||||||||| ||||| |||| || ||||||    
T  37063146 cttatatgaaaatagtttgactttattttatcttttgttatagaaatagtttatacataagcatttatat 37063215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 179
Target Start/End: Original strand, 37611194 - 37611255
Alignment:
Q  118 agagcttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataagct 179  Q
    |||||||||||||||||||  |  ||| |||||||| ||||||||| |||||| ||||||||    
T  37611194 agagcttatgaaaacaacttgtgacatgttcataagctgttttcaggttatttccataagct 37611255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 179
Target Start/End: Original strand, 37787924 - 37787985
Alignment:
Q  118 agagcttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataagct 179  Q
    |||||||||||||||||||  |  ||| |||||||| ||||||||| |||||| ||||||||    
T  37787924 agagcttatgaaaacaacttgtgacatgttcataagctgttttcaggttatttccataagct 37787985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 299
Target Start/End: Original strand, 2569815 - 2569875
Alignment:
Q  239 agaaatagcttataaataaacacttatataataaatgattatgctataaacacttaattaa 299  Q
    |||||||||||||| |||| ||||||||| ||||||| ||| | ||||| | |||||||||    
T  2569815 agaaatagcttatacataagcacttatatgataaatgtttacggtataagcgcttaattaa 2569875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 3237159 - 3237123
Alignment:
Q  143 atattcataagttgttttcagcttattttcataagct 179  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  3237159 atattcataagttgtgttcagcatattttcataagct 3237123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 287
Target Start/End: Original strand, 4991008 - 4991104
Alignment:
Q  191 cttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataaatgattatgctataa 287  Q
    |||||| ||||||| ||||||   |||| |||| ||| | ||| ||||| |||||||||||| | |||||||||||| ||||  | |||||||||||    
T  4991008 cttataacttatatgaaaataaattgatcttatgttatcttttgttataaaaatagcttatacacaaacacttatatgataatcgcttatgctataa 4991104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 180
Target Start/End: Complemental strand, 10303857 - 10303825
Alignment:
Q  148 cataagttgttttcagcttattttcataagctt 180  Q
    ||||||||||| |||||||||||||||||||||    
T  10303857 cataagttgttgtcagcttattttcataagctt 10303825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 272
Target Start/End: Complemental strand, 13224409 - 13224353
Alignment:
Q  216 gattttattttaccatttattatagaaatagcttataaataaacacttatataataa 272  Q
    |||||||||||| | ||| |||||||||||||||||| |||| ||||| ||| ||||    
T  13224409 gattttattttatcttttgttatagaaatagcttatacataagcacttctatgataa 13224353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 236
Target Start/End: Complemental strand, 34205259 - 34205199
Alignment:
Q  176 agcttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttatt 236  Q
    |||||| |||||||||||||| |||||||||||||| | ||| |||| |||| | ||||||    
T  34205259 agcttatgaaaacaacttatagcttatataaaaataatttgactttactttatcctttatt 34205199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 180
Target Start/End: Complemental strand, 35963302 - 35963270
Alignment:
Q  148 cataagttgttttcagcttattttcataagctt 180  Q
    ||||||||||||||||||||||| |||||||||    
T  35963302 cataagttgttttcagcttatttccataagctt 35963270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 177
Target Start/End: Original strand, 41957421 - 41957489
Alignment:
Q  109 ctattttgaagagcttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataag 177  Q
    |||||| |||||||||| | ||||| || ||  ||| | ||||||||||||||| ||||||||||||||    
T  41957421 ctatttggaagagcttacggaaacagcttatgacatgtccataagttgttttcatcttattttcataag 41957489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 54)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 249
Target Start/End: Original strand, 31739980 - 31740082
Alignment:
Q  147 tcataagttgttttcagcttattttcataagcttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatag 246  Q
    ||||||| ||||||||| |||||| ||||||||  | | ||||||||||| ||||||| |||||||| ||| ||||||||| | ||  ||||||||||||    
T  31739980 tcataagctgttttcagattatttccataagctctctagaacaacttatagcttatatgaaaatagtttgactttattttatctttagttatagaaatag 31740079  T
Q  247 ctt 249  Q
    |||    
T  31740080 ctt 31740082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 176 - 257
Target Start/End: Complemental strand, 32694232 - 32694151
Alignment:
Q  176 agcttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataa 257  Q
    |||||| | ||||||||||||  ||||||||||||||| ||||||||||||| | |||  ||||||||||||||||| ||||    
T  32694232 agcttatgcaaacaacttataaattatataaaaatagtctgattttattttatcttttgatatagaaatagcttatacataa 32694151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 176 - 272
Target Start/End: Original strand, 17952751 - 17952847
Alignment:
Q  176 agcttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataa 272  Q
    |||||| ||||||| ||| || ||||||| |||||||| ||| ||||||||| | ||| |||||||||||||||||| |||| | ||||||| ||||    
T  17952751 agcttatgaaaacatcttgtagcttatatgaaaatagtttgactttattttatcttttgttatagaaatagcttatatataagctcttatatgataa 17952847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 183 - 304
Target Start/End: Complemental strand, 5133785 - 5133663
Alignment:
Q  183 gaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataaatgattatgc 282  Q
    ||||||| ||||||||||||||||||| ||| |   ||||||||| | ||| |||||||||||||||||| |||| ||   |||| |||| || ||||||    
T  5133785 gaaaacagcttatatcttatataaaaacagtttatctttattttatcttttgttatagaaatagcttatacataagca--aatatgataagtgcttatgc 5133688  T
Q  283 t---ataaacacttaattaagctgt 304  Q
    |   |||||||||||||||||||||    
T  5133687 tataataaacacttaattaagctgt 5133663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 176 - 306
Target Start/End: Complemental strand, 10143192 - 10143062
Alignment:
Q  176 agcttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataaatg 275  Q
    |||||| ||||| |||||||| |||||||||||| ||| ||| || |||||| | ||| ||||||||||| |||||| |||| |||||||   |||| |     
T  10143192 agcttatgaaaaaaacttatagcttatataaaaacagtttgacttaattttatcttttgttatagaaataacttatacataagcacttattcgataagtt 10143093  T
Q  276 attatgctataaacacttaattaagctgtat 306  Q
     || |||| ||| |||||||||||| |||||    
T  10143092 tttgtgctgtaagcacttaattaagatgtat 10143062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 304
Target Start/End: Original strand, 28803563 - 28803684
Alignment:
Q  183 gaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataaatgattatgc 282  Q
    ||||||||||| || ||||||| |||  ||| ||| ||||||||| | ||| |||| |||||| |||||| |||| ||||||||| ||||    ||||||    
T  28803563 gaaaacaacttgtagcttatatgaaatcagtttgactttattttatcttttgttatcgaaataacttatatataagcacttatatgataagcatttatgc 28803662  T
Q  283 tataaacacttaattaagctgt 304  Q
     |||||||||||||||| ||||    
T  28803663 cataaacacttaattaaactgt 28803684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 179
Target Start/End: Original strand, 35378995 - 35379056
Alignment:
Q  118 agagcttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataagct 179  Q
    |||||||||||||||| || ||  | | ||||||||||||||||||||||||||||||||||    
T  35378995 agagcttatgaaaacagctgatgacttgttcataagttgttttcagcttattttcataagct 35379056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 176 - 272
Target Start/End: Complemental strand, 9478319 - 9478223
Alignment:
Q  176 agcttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataa 272  Q
    |||||||||| ||| | |||| ||||||| |||||| | ||| ||||||||| |   | |||||||||||||||||| |||||||||||||| ||||    
T  9478319 agcttacgaacacagcatatagcttatatgaaaatattttgagtttattttatctactgttatagaaatagcttatacataaacacttatatgataa 9478223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 10150731 - 10150679
Alignment:
Q  220 ttattttaccatttattatagaaatagcttataaataaacacttatataataa 272  Q
    |||||||| | ||||||||||||||| |||||| |||||||||||||||||||    
T  10150731 ttattttatcttttattatagaaataacttatacataaacacttatataataa 10150679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 219 - 267
Target Start/End: Complemental strand, 13864627 - 13864579
Alignment:
Q  219 tttattttaccatttattatagaaatagcttataaataaacacttatat 267  Q
    ||||||||||| ||| |||||||||||||||||| ||||||||||||||    
T  13864627 tttattttaccttttgttatagaaatagcttatacataaacacttatat 13864579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 299
Target Start/End: Original strand, 42817486 - 42817549
Alignment:
Q  236 tatagaaatagcttataaataaacacttatataataaatgattatgctataaacacttaattaa 299  Q
    |||||||||| | ||||||| ||||||||||| ||||| | ||||||||||| |||||||||||    
T  42817486 tatagaaataacatataaatcaacacttatatgataaacgcttatgctataagcacttaattaa 42817549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 180
Target Start/End: Complemental strand, 9556330 - 9556268
Alignment:
Q  118 agagcttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataagctt 180  Q
    ||||||||||||||||||||||  ||| | ||||||| | ||||| |||||||||||||||||    
T  9556330 agagcttatgaaaacaactaatgacatgtccataagtagatttcaacttattttcataagctt 9556268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 9878739 - 9878805
Alignment:
Q  183 gaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagctt 249  Q
    |||||||||||||| | ||| |||||||||| ||| ||||||||| | ||| |||||||||||||||    
T  9878739 gaaaacaacttatagcatatgtaaaaatagtttgagtttattttatcttttgttatagaaatagctt 9878805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 299
Target Start/End: Complemental strand, 43808531 - 43808473
Alignment:
Q  241 aaatagcttataaataaacacttatataataaatgattatgctataaacacttaattaa 299  Q
    |||||||||||| |||||||||||||| |||   | |||||||||||||||||||||||    
T  43808531 aaatagcttatacataaacacttatatgatacgcgcttatgctataaacacttaattaa 43808473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 144 - 177
Target Start/End: Original strand, 1493518 - 1493551
Alignment:
Q  144 tattcataagttgttttcagcttattttcataag 177  Q
    ||||||||||||||||||||||||||||||||||    
T  1493518 tattcataagttgttttcagcttattttcataag 1493551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 300
Target Start/End: Complemental strand, 15171211 - 15171146
Alignment:
Q  235 ttatagaaatagcttataaataaacacttatataataaatgattatgctataaacacttaattaag 300  Q
    ||||||||| | |||||| ||||||||||||| ||||   | ||||||||||||||||||||||||    
T  15171211 ttatagaaaaaacttatacataaacacttataaaatacgagcttatgctataaacacttaattaag 15171146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 184 - 265
Target Start/End: Complemental strand, 25609808 - 25609727
Alignment:
Q  184 aaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttat 265  Q
    ||||||||||||| ||||||  ||||||   ||| ||||||||| | ||| |||||||||||||||||| |||| |||||||    
T  25609808 aaaacaacttatagcttatacgaaaataaattgactttattttatcttttcttatagaaatagcttatacataagcacttat 25609727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 178 - 266
Target Start/End: Original strand, 35755554 - 35755642
Alignment:
Q  178 cttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccattt-attatagaaatagcttataaataaacacttata 266  Q
    |||| |||||||||||||| |||| || |||| | | ||| |||||||| | |||| ||||||||||||||||||| |||||||||||||    
T  35755554 cttatgaaaacaacttatagcttacatgaaaacaatttgactttatttt-ctatttgattatagaaatagcttatacataaacacttata 35755642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 44606087 - 44606148
Alignment:
Q  116 gaagagcttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataag 177  Q
    ||||| ||||||||||||||| ||  ||| | |||||||||||||||||| |||||||||||    
T  44606087 gaagaacttatgaaaacaacttatgacatgtccataagttgttttcagctgattttcataag 44606148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 300
Target Start/End: Original strand, 15200439 - 15200503
Alignment:
Q  236 tatagaaatagcttataaataaacacttatataataaatgattatgctataaacacttaattaag 300  Q
    |||||||||||||||  ||||| ||||||||  ||||||| ||||||||||||  ||||||||||    
T  15200439 tatagaaatagcttaagaataagcacttatacgataaatggttatgctataaatgcttaattaag 15200503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 268
Target Start/End: Complemental strand, 28933844 - 28933752
Alignment:
Q  176 agcttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatata 268  Q
    |||||| |||||||| ||||| |||| || |||||| | |||||| |||||| | ||| ||||| |||||||||||| || | ||||||||||    
T  28933844 agcttatgaaaacaatttataacttaaatgaaaataatttgatttgattttatcttttgttatataaatagcttatacatgagcacttatata 28933752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 300
Target Start/End: Original strand, 29503142 - 29503255
Alignment:
Q  185 aaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataaatgattatgcta 284  Q
    ||||| |||||| ||| | | |||||||| ||| ||||||||| |  || ||||||||||| | |||| |||||||||| |||||||| || ||||||||    
T  29503142 aaacatcttataacttctttgaaaatagtttgactttattttatc--ttgttatagaaatatcatatacataaacacttctataataagtgcttatgcta 29503239  T
Q  285 taaacacttaattaag 300  Q
     |||  ||||||||||    
T  29503240 caaatgcttaattaag 29503255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 299
Target Start/End: Original strand, 33087707 - 33087769
Alignment:
Q  235 ttatagaaatagcttataaataaacacttatataataaatgattatgctataaacacttaattaa 299  Q
    |||||||||||||||||| || ||||||||||| ||||||| |||||| |||||| |||||||||    
T  33087707 ttatagaaatagcttatatat-aacacttatatgataaatg-ttatgccataaacgcttaattaa 33087769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 146 - 177
Target Start/End: Original strand, 7928306 - 7928337
Alignment:
Q  146 ttcataagttgttttcagcttattttcataag 177  Q
    ||||||||||||||||||||||||||||||||    
T  7928306 ttcataagttgttttcagcttattttcataag 7928337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 236 - 287
Target Start/End: Original strand, 11393765 - 11393816
Alignment:
Q  236 tatagaaatagcttataaataaacacttatataataaatgattatgctataa 287  Q
    ||||||||||||||||| |||| |||||| || ||||||| |||||||||||    
T  11393765 tatagaaatagcttatacataagcacttaaatgataaatgtttatgctataa 11393816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 236 - 287
Target Start/End: Original strand, 11410426 - 11410477
Alignment:
Q  236 tatagaaatagcttataaataaacacttatataataaatgattatgctataa 287  Q
    ||||||||||||||||| |||| |||||| || ||||||| |||||||||||    
T  11410426 tatagaaatagcttatacataagcacttaaatgataaatgtttatgctataa 11410477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 117 - 180
Target Start/End: Original strand, 41809223 - 41809286
Alignment:
Q  117 aagagcttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataagctt 180  Q
    |||||||| || |||||||| ||  ||| ||||||||||||||| ||||||||| |||||||||    
T  41809223 aagagcttgtggaaacaacttatgacatgttcataagttgtttttagcttatttccataagctt 41809286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 180
Target Start/End: Original strand, 9875468 - 9875506
Alignment:
Q  142 catattcataagttgttttcagcttattttcataagctt 180  Q
    |||||||||||| ||||||||||||||||||| ||||||    
T  9875468 catattcataagctgttttcagcttattttcacaagctt 9875506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 180
Target Start/End: Original strand, 39236498 - 39236536
Alignment:
Q  142 catattcataagttgttttcagcttattttcataagctt 180  Q
    ||||||||||||||||||| |||||||||| ||||||||    
T  39236498 catattcataagttgtttttagcttatttttataagctt 39236536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 180
Target Start/End: Complemental strand, 39622038 - 39621980
Alignment:
Q  122 cttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataagctt 180  Q
    ||||||||||||||| ||  || |||||||| ||||||||||||||||| | |||||||    
T  39622038 cttatgaaaacaacttatgacaaattcataaattgttttcagcttatttccttaagctt 39621980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 176
Target Start/End: Complemental strand, 45314955 - 45314901
Alignment:
Q  122 cttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataa 176  Q
    |||||| |||||||| ||  |||||| ||||||||||||||| ||||||||||||    
T  45314955 cttatgtaaacaacttatgacatatttataagttgttttcagtttattttcataa 45314901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 179
Target Start/End: Original strand, 1056116 - 1056169
Alignment:
Q  126 tgaaaacaactaattgcatattcataagttgttttcagcttattttcataagct 179  Q
    ||||||||||| ||  ||| ||||| ||||||||||||||| ||||||||||||    
T  1056116 tgaaaacaacttatgacatgttcattagttgttttcagcttgttttcataagct 1056169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 170
Target Start/End: Original strand, 14316115 - 14316176
Alignment:
Q  109 ctattttgaagagcttatgaaaacaactaattgcatattcataagttgttttcagcttattt 170  Q
    |||||||| |||||||||| |||||||| ||  |||||  ||||| ||||||||||||||||    
T  14316115 ctattttggagagcttatggaaacaacttatgacatatgtataagctgttttcagcttattt 14316176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 179
Target Start/End: Complemental strand, 16867806 - 16867769
Alignment:
Q  142 catattcataagttgttttcagcttattttcataagct 179  Q
    ||||||||||||||||||||| ||||||| ||||||||    
T  16867806 catattcataagttgttttcaacttatttccataagct 16867769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 28677642 - 28677699
Alignment:
Q  122 cttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataagct 179  Q
    |||||||||||| || ||  ||| |||||||||||||||| |||||||| ||||||||    
T  28677642 cttatgaaaacagcttatgacattttcataagttgttttcggcttatttccataagct 28677699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 170
Target Start/End: Complemental strand, 28933927 - 28933863
Alignment:
Q  105 aagtctattttgaagagcttatgaaaacaactaattgcatattcataagttgttttcagcttattt 170  Q
    |||||| ||| ||||||||||||||||||||| || |||| ||||| || |||||||| |||||||    
T  28933927 aagtctgtttggaagagcttatgaaaacaacttatggcatgttcat-agctgttttcaacttattt 28933863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 284
Target Start/End: Complemental strand, 31461415 - 31461350
Alignment:
Q  219 tttattttaccatttattatagaaatagcttataaataaacacttatataataaatgattatgcta 284  Q
    ||||||||| | ||| |||||||||||||||||| |||| ||||||||| ||| | | ||||||||    
T  31461415 tttattttatcttttgttatagaaatagcttatatataaccacttatatgatatacgtttatgcta 31461350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 265
Target Start/End: Original strand, 34054951 - 34055040
Alignment:
Q  176 agcttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttat 265  Q
    |||||| ||||||| |||||||| |||||  ||| ||| ||  ||||||||| | ||| ||||||||||||| |||| |||| |||||||    
T  34054951 agcttatgaaaacaccttatatcatatatgtaaacagtttgcctttattttatcttttgttatagaaatagcctatacataagcacttat 34055040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 179
Target Start/End: Original strand, 35378539 - 35378572
Alignment:
Q  146 ttcataagttgttttcagcttattttcataagct 179  Q
    |||||||||| |||||||||||||||||||||||    
T  35378539 ttcataagttattttcagcttattttcataagct 35378572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 257
Target Start/End: Complemental strand, 39983362 - 39983282
Alignment:
Q  176 agcttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataa 257  Q
    |||||| |||||||||||||| ||||||| |||||  | | ||||||||||||| ||| ||| | |||||||||||| ||||    
T  39983362 agcttatgaaaacaacttatagcttatatgaaaattattttattttattttacc-tttgttacaaaaatagcttatatataa 39983282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 41905895 - 41905932
Alignment:
Q  118 agagcttatgaaaacaactaattgcatattcataagtt 155  Q
    ||||||||||||||||||| ||||||| ||||||||||    
T  41905895 agagcttatgaaaacaacttattgcatgttcataagtt 41905932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 179
Target Start/End: Original strand, 43065429 - 43065490
Alignment:
Q  118 agagcttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataagct 179  Q
    ||||||||||||||||||| ||  ||| | ||||| |||||||||||||||||  |||||||    
T  43065429 agagcttatgaaaacaacttatgacatgtccataaattgttttcagcttatttcaataagct 43065490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 179
Target Start/End: Original strand, 43717143 - 43717176
Alignment:
Q  146 ttcataagttgttttcagcttattttcataagct 179  Q
    |||||| |||||||||||||||||||||||||||    
T  43717143 ttcataggttgttttcagcttattttcataagct 43717176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 287
Target Start/End: Original strand, 43965242 - 43965291
Alignment:
Q  238 tagaaatagcttataaataaacacttatataataaatgattatgctataa 287  Q
    ||||||||||||||  |||||||||||||| |||| || |||||||||||    
T  43965242 tagaaatagcttattcataaacacttatatgataagtgcttatgctataa 43965291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 175
Target Start/End: Complemental strand, 44443384 - 44443355
Alignment:
Q  146 ttcataagttgttttcagcttattttcata 175  Q
    ||||||||||||||||||||||||||||||    
T  44443384 ttcataagttgttttcagcttattttcata 44443355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 272
Target Start/End: Original strand, 44606181 - 44606234
Alignment:
Q  219 tttattttaccatttattatagaaatagcttataaataaacacttatataataa 272  Q
    ||||||||| | ||| ||||  |||||||||||| |||||||||||||||||||    
T  44606181 tttattttatcttttgttatgaaaatagcttatacataaacacttatataataa 44606234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 179
Target Start/End: Complemental strand, 1647334 - 1647266
Alignment:
Q  111 attttgaagagcttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataagct 179  Q
    |||| ||||| |||||||||||| || ||  |||  ||||||| |||||||||||||||| ||||||||    
T  1647334 atttagaagaacttatgaaaacagcttatgacatgctcataagctgttttcagcttatttccataagct 1647266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #48
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 287
Target Start/End: Complemental strand, 4550790 - 4550686
Alignment:
Q  183 gaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataaatgattatgc 282  Q
    ||||||||||||||  |||||| |||| ||  |||  |||||||| | |||||||| |||| | |||||| |||| ||||||| | ||||  ||||||||    
T  4550790 gaaaacaacttatagtttatatgaaaacagcttgacgttattttatcttttattatggaaacaacttatacataagcacttatgtgataagagattatgc 4550691  T
Q  283 tataa 287  Q
    |||||    
T  4550690 tataa 4550686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #49
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 298
Target Start/End: Original strand, 5867303 - 5867363
Alignment:
Q  238 tagaaatagcttataaataaacacttatataataaatgattatgctataaacacttaatta 298  Q
    ||||||||||||| | ||||| |||||||| |||| || | |||||||||||||| |||||    
T  5867303 tagaaatagcttagacataaatacttatatgataagtgttgatgctataaacactaaatta 5867363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #50
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 268
Target Start/End: Complemental strand, 10769756 - 10769669
Alignment:
Q  183 gaaaacaacttata--tcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatata 268  Q
    ||||||||||||||  |||||||| | || ||| ||| ||||| ||||| ||| ||||||||||||| |||  |||| ||||||||||    
T  10769756 gaaaacaacttataactcttatattagaacagtttgactttatgttaccttttgttatagaaatagcctattcataagcacttatata 10769669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #51
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 304
Target Start/End: Original strand, 11393476 - 11393544
Alignment:
Q  236 tatagaaatagcttataaataaacacttatataataaatgattatgctataaacacttaattaagctgt 304  Q
    ||||||||||||||||| |||| ||||||||| |||||   || ||||||||   ||||||||||||||    
T  11393476 tatagaaatagcttatagataagcacttatatgataaacacttgtgctataagtgcttaattaagctgt 11393544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #52
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 304
Target Start/End: Original strand, 11410137 - 11410205
Alignment:
Q  236 tatagaaatagcttataaataaacacttatataataaatgattatgctataaacacttaattaagctgt 304  Q
    ||||||||||||||||| |||| ||||||||| |||||   || ||||||||   ||||||||||||||    
T  11410137 tatagaaatagcttatagataagcacttatatgataaacacttgtgctataagtgcttaattaagctgt 11410205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #53
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 12313157 - 12313213
Alignment:
Q  123 ttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataagct 179  Q
    ||||||||||| || ||  ||| ||||||||||| ||||| ||||||||||||||||    
T  12313157 ttatgaaaacagcttatgccatgttcataagttgatttcaccttattttcataagct 12313213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #54
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 26484193 - 26484237
Alignment:
Q  235 ttatagaaatagcttataaataaacacttatataataaatgatta 279  Q
    |||||||||||||||||  |||| ||||||||| |||||||||||    
T  26484193 ttatagaaatagcttatccataagcacttatatgataaatgatta 26484237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 48)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 147 - 287
Target Start/End: Complemental strand, 47877171 - 47877035
Alignment:
Q  147 tcataagttgttttcagcttattttcataagcttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatag 246  Q
    |||||||||||||||||||||||||||||||||| | | || | ||||||  |||||| |||| | | ||||||||||||| | ||| |||| ||||||     
T  47877171 tcataagttgttttcagcttattttcataagctttccataatagcttatagtttatatgaaaacaatttgattttattttatcttttgttattgaaata- 47877073  T
Q  247 cttataaataaacacttatataataaatgattatgctataa 287  Q
       ||| |||| || |||||| |||| | ||||||||||||    
T  47877072 ---atacataagcaattatatgataagtcattatgctataa 47877035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 192 - 286
Target Start/End: Complemental strand, 45107626 - 45107533
Alignment:
Q  192 ttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataaatgattatgctata 286  Q
    ||||| ||||||| |||||||| ||| |||||||||   ||| |||||||||||||||||| |||| ||||||||| ||| ||| ||||||||||    
T  45107626 ttataacttatatgaaaatagtttgactttattttatt-tttcttatagaaatagcttatagataagcacttatatgatagatgtttatgctata 45107533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 196
Target Start/End: Original strand, 42757154 - 42757235
Alignment:
Q  116 gaagagcttatgaaaacaactaattgcatattcataagttgttttcagcttatttt-cataagcttacgaaaacaacttata 196  Q
    ||||| |||| |||||||||| ||| |||||||||||| |||||||||||| |||| |||||||| | ||||||| ||||||    
T  42757154 gaagaacttacgaaaacaacttattacatattcataagctgttttcagctttttttccataagctcatgaaaacagcttata 42757235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 176 - 252
Target Start/End: Original strand, 42556681 - 42556757
Alignment:
Q  176 agcttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttata 252  Q
    |||||| |||||||||||||| ||||||||||| |||| ||||||||||| | | ||| | ||||||||| ||||||    
T  42556681 agcttatgaaaacaacttatagcttatataaaagtagtttgattttatttcatcttttgtcatagaaataacttata 42556757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 178 - 297
Target Start/End: Complemental strand, 4200247 - 4200128
Alignment:
Q  178 cttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataaatgat 277  Q
    |||||||||||||  |||| ||||||| |||| |   ||| ||||||||| | ||| ||||| ||||| |||||| ||||||||||| || |||| || |    
T  4200247 cttacgaaaacaatatatagcttatatgaaaacaacttgactttattttatcttttgttataaaaataacttatatataaacacttagatgataagtgct 4200148  T
Q  278 tatgctataaacacttaatt 297  Q
    |||||||||  |||||||||    
T  4200147 tatgctatacgcacttaatt 4200128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 238 - 300
Target Start/End: Original strand, 30237857 - 30237920
Alignment:
Q  238 tagaaatagcttataaataaa-cacttatataataaatgattatgctataaacacttaattaag 300  Q
    |||||||| |||||| ||||| |||||||||||||| || |||||||||| |||||||||||||    
T  30237857 tagaaataacttatacataaaacacttatataataagtgcttatgctatagacacttaattaag 30237920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 142 - 177
Target Start/End: Complemental strand, 34290303 - 34290268
Alignment:
Q  142 catattcataagttgttttcagcttattttcataag 177  Q
    ||||||||||||||||||||||||||||||||||||    
T  34290303 catattcataagttgttttcagcttattttcataag 34290268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 300
Target Start/End: Original strand, 7200914 - 7201016
Alignment:
Q  198 cttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataaatgattatgctataaacacttaatt 297  Q
    ||||||| | ||| || ||| ||||||||| | |||||||| |||||||||||||| |||||||||| || ||||  ||||| | ||||| || ||||||    
T  7200914 cttatatgataatcgtttgactttattttatcttttattatggaaatagcttataagtaaacacttacatgataagcgattaagttataatcatttaatt 7201013  T
Q  298 aag 300  Q
    |||    
T  7201014 aag 7201016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 170
Target Start/End: Complemental strand, 17420300 - 17420242
Alignment:
Q  112 ttttgaagagcttatgaaaacaactaattgcatattcataagttgttttcagcttattt 170  Q
    ||||||||||||||||||||||||| ||| ||| | ||||| ||||||||| |||||||    
T  17420300 ttttgaagagcttatgaaaacaacttattacatgtccataaattgttttcaacttattt 17420242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 252
Target Start/End: Original strand, 7218131 - 7218200
Alignment:
Q  183 gaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttata 252  Q
    |||||||||||||| ||||||| |||| | | ||| ||||||||||| |||||||| ||||||| |||||    
T  7218131 gaaaacaacttatagcttatatgaaaacaatttgactttattttaccttttattatggaaatagattata 7218200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 146 - 179
Target Start/End: Original strand, 10199415 - 10199448
Alignment:
Q  146 ttcataagttgttttcagcttattttcataagct 179  Q
    ||||||||||||||||||||||||||||||||||    
T  10199415 ttcataagttgttttcagcttattttcataagct 10199448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 146 - 179
Target Start/End: Complemental strand, 15361103 - 15361070
Alignment:
Q  146 ttcataagttgttttcagcttattttcataagct 179  Q
    ||||||||||||||||||||||||||||||||||    
T  15361103 ttcataagttgttttcagcttattttcataagct 15361070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 304
Target Start/End: Original strand, 24857623 - 24857692
Alignment:
Q  235 ttatagaaatagcttataaataaacacttatataataaatgattatgctataaacacttaattaagctgt 304  Q
    |||||||||||| ||||| |||||||||||||| || | || ||||| || || ||||||||||||||||    
T  24857623 ttatagaaatagtttatacataaacacttatatgattagtgcttatgatacaagcacttaattaagctgt 24857692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 118 - 179
Target Start/End: Original strand, 26461920 - 26461981
Alignment:
Q  118 agagcttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataagct 179  Q
    ||||||||||||||||||  || |||| | |||  |||||||||||||||||||||||||||    
T  26461920 agagcttatgaaaacaacatatggcatgtccatgggttgttttcagcttattttcataagct 26461981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 31517723 - 31517780
Alignment:
Q  122 cttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataagct 179  Q
    ||||| ||||||||| ||  ||| |||||||| |||||||||||||||||||||||||    
T  31517723 cttatcaaaacaactcatgacatgttcataagctgttttcagcttattttcataagct 31517780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 118 - 179
Target Start/End: Original strand, 38170669 - 38170730
Alignment:
Q  118 agagcttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataagct 179  Q
    |||||||||||||||| || ||  ||| ||||||||||||||||||||| ||||| ||||||    
T  38170669 agagcttatgaaaacagcttatgacatgttcataagttgttttcagcttgttttcctaagct 38170730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 122 - 171
Target Start/End: Complemental strand, 38578615 - 38578566
Alignment:
Q  122 cttatgaaaacaactaattgcatattcataagttgttttcagcttatttt 171  Q
    ||||||||||||||| ||  ||||||||||||||||||| ||||||||||    
T  38578615 cttatgaaaacaacttataacatattcataagttgttttgagcttatttt 38578566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 252
Target Start/End: Original strand, 40304111 - 40304180
Alignment:
Q  183 gaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttata 252  Q
    ||||||| |||||| ||||||| |||| | ||||||||||||||| | ||| ||||| ||||||||||||    
T  40304111 gaaaacagcttataacttatatgaaaacaatgtgattttattttatcttttgttatataaatagcttata 40304180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 219 - 304
Target Start/End: Complemental strand, 49557118 - 49557033
Alignment:
Q  219 tttattttaccatttattatagaaatagcttataaataaacacttatataataaatgattatgctataaacacttaattaagctgt 304  Q
    ||||||||| | ||| ||||||||||| |||||| |  | ||||||||| |||| |||||| | ||||| ||||||||||||||||    
T  49557118 tttattttatcttttgttatagaaataacttatacagcagcacttatatgataagtgattacgttataagcacttaattaagctgt 49557033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 179
Target Start/End: Original strand, 11639388 - 11639456
Alignment:
Q  111 attttgaagagcttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataagct 179  Q
    |||| |||||||||||||||||| || ||  ||| | |||||| |||||| ||||||||||||||||||    
T  11639388 atttagaagagcttatgaaaacagcttatgacatgtccataagctgtttttagcttattttcataagct 11639456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 263
Target Start/End: Complemental strand, 15360903 - 15360827
Alignment:
Q  187 acaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacactt 263  Q
    |||||||||| ||||||| |||| ||| ||| ||||||||| | ||| ||||||||||| || ||| ||||||||||    
T  15360903 acaacttatagcttatatgaaaacagtttgactttattttatcttttgttatagaaataactaatacataaacactt 15360827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 304
Target Start/End: Complemental strand, 17420223 - 17420095
Alignment:
Q  176 agcttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataaatg 275  Q
    ||||||||||||||  ||||| ||||||| ||||| ||  || ||||||||| | ||| ||||| |||||| ||||| ||||  |||||| |  |||  |    
T  17420223 agcttacgaaaacagtttatagcttatatgaaaattgttcgactttattttatcttttcttataaaaatagtttatacataagtacttatgtgctaagcg 17420124  T
Q  276 attatgctataaacacttaattaagctgt 304  Q
     |||| |||||| ||||||||||||||||    
T  17420123 cttatactataatcacttaattaagctgt 17420095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 180
Target Start/End: Original strand, 28689461 - 28689493
Alignment:
Q  148 cataagttgttttcagcttattttcataagctt 180  Q
    |||||||||||||||||||||||||||||||||    
T  28689461 cataagttgttttcagcttattttcataagctt 28689493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 296
Target Start/End: Original strand, 46504276 - 46504387
Alignment:
Q  184 aaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataaatgattatgct 283  Q
    ||||||||||||| ||||||||  |||| | |||  | |||||| | ||| ||||| |||||| ||||| | |||||||||||| ||||  | |||||||    
T  46504276 aaaacaacttataacttatataggaataat-tgacctaattttatcttttgttataaaaatagtttatagacaaacacttatatgataagagcttatgct 46504374  T
Q  284 ataaacacttaat 296  Q
    |||||||||||||    
T  46504375 ataaacacttaat 46504387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 300
Target Start/End: Complemental strand, 49517122 - 49516965
Alignment:
Q  148 cataagttgttttcagcttattttcataagct----tacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaa 243  Q
    ||||||| |||||||| ||||||| |||||||    || ||||||| |||||| |||| || |||| | | ||| ||||||||| | ||| |||||||||    
T  49517122 cataagtggttttcaggttattttgataagctagcttatgaaaacagcttatagcttaaatgaaaacaatttgactttattttatcttttgttatagaaa 49517023  T
Q  244 tagcttataaataaac-acttatataataaatgattatgctataaacacttaattaag 300  Q
    || |||||| | |||| | |||||| ||||| | ||||| | ||| ||||||||||||    
T  49517022 taacttatacacaaacaatttatatgataaacgcttatgttttaagcacttaattaag 49516965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 122 - 173
Target Start/End: Complemental strand, 4482017 - 4481966
Alignment:
Q  122 cttatgaaaacaactaattgcatattcataagttgttttcagcttattttca 173  Q
    ||||||||||||||| ||| ||| |||||||| |||||| ||||||||||||    
T  4482017 cttatgaaaacaacttattacatgttcataagctgtttttagcttattttca 4481966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 142 - 177
Target Start/End: Original strand, 7137001 - 7137036
Alignment:
Q  142 catattcataagttgttttcagcttattttcataag 177  Q
    |||||||||||||| |||||||||||||||||||||    
T  7137001 catattcataagttattttcagcttattttcataag 7137036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 122 - 177
Target Start/End: Complemental strand, 10280736 - 10280681
Alignment:
Q  122 cttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataag 177  Q
    ||||||||||||||| ||| ||| |||||||| | || ||||||||||||||||||    
T  10280736 cttatgaaaacaacttatttcatgttcataagcttttgtcagcttattttcataag 10280681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 178 - 257
Target Start/End: Complemental strand, 15488972 - 15488893
Alignment:
Q  178 cttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataa 257  Q
    |||| ||| ||||| ||||||||||||||||||||| ||| ||||| ||| | ||||| ||||||| | |||||| ||||    
T  15488972 cttatgaagacaacgtatatcttatataaaaatagtttgactttatgttatcttttatcatagaaacaacttatacataa 15488893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 146 - 177
Target Start/End: Original strand, 38503472 - 38503503
Alignment:
Q  146 ttcataagttgttttcagcttattttcataag 177  Q
    ||||||||||||||||||||||||||||||||    
T  38503472 ttcataagttgttttcagcttattttcataag 38503503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 198 - 257
Target Start/End: Original strand, 49692122 - 49692181
Alignment:
Q  198 cttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataa 257  Q
    |||||||||| ||||| ||| ||||||||| | ||||||||||||||| |||||| ||||    
T  49692122 cttatataaatatagtctgactttattttatcctttattatagaaataacttatacataa 49692181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 376
Target Start/End: Original strand, 4803286 - 4803344
Alignment:
Q  318 taccctttctgctagactgtgactatcagtagcttgacctcttcttgctctaacatgaa 376  Q
    |||||||||||| ||||||||||| |  || |||||||||||||| ||||| |||||||    
T  4803286 taccctttctgcaagactgtgactgtttgtggcttgacctcttctagctctcacatgaa 4803344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 266
Target Start/End: Original strand, 5756736 - 5756826
Alignment:
Q  176 agcttacgaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttata 266  Q
    |||||||||||||||||||||  |||||| |||| ||| | | ||||| | | | ||| ||||||||||||||||||  | ||||||||||    
T  5756736 agcttacgaaaacaacttataatttatatgaaaacagtttaactttatatcatcttttgttatagaaatagcttatacgtgaacacttata 5756826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 29929594 - 29929652
Alignment:
Q  112 ttttgaagagcttatgaaaacaactaattgcatattcataagttgttttcagcttattt 170  Q
    ||||| ||||||||||||||||||| ||  ||| | ||||||||||||||||| |||||    
T  29929594 ttttggagagcttatgaaaacaactcatgacatgtgcataagttgttttcagcatattt 29929652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 269
Target Start/End: Complemental strand, 30043709 - 30043671
Alignment:
Q  231 tttattatagaaatagcttataaataaacacttatataa 269  Q
    |||||||||||||||||||||| |||| |||||||||||    
T  30043709 tttattatagaaatagcttatacataatcacttatataa 30043671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 179
Target Start/End: Original strand, 37593670 - 37593724
Alignment:
Q  125 atgaaaacaactaattgcatattcataagttgttttcagcttattttcataagct 179  Q
    ||||| |||||| ||  ||| |||||||| |||||||||||||||||||||||||    
T  37593670 atgaacacaacttatgacatgttcataagctgttttcagcttattttcataagct 37593724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 179
Target Start/End: Complemental strand, 6292556 - 6292523
Alignment:
Q  146 ttcataagttgttttcagcttattttcataagct 179  Q
    |||||||| |||||||||||||||||||||||||    
T  6292556 ttcataagctgttttcagcttattttcataagct 6292523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 272
Target Start/End: Complemental strand, 16980807 - 16980750
Alignment:
Q  215 tgattttattttaccatttattatagaaatagcttataaataaacacttatataataa 272  Q
    ||||||||||||||||||| || |||||||  |||||| |||| ||||||||| ||||    
T  16980807 tgattttattttaccattttttgtagaaatgacttatacataagcacttatatgataa 16980750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 304
Target Start/End: Original strand, 24263256 - 24263317
Alignment:
Q  243 atagcttataaataaacacttatataataaatgattatgctataaacacttaattaagctgt 304  Q
    |||| ||||| ||||||||||||||  |||| | ||||||||||| ||||||||||| ||||    
T  24263256 ataggttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgt 24263317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 179
Target Start/End: Complemental strand, 25479644 - 25479611
Alignment:
Q  146 ttcataagttgttttcagcttattttcataagct 179  Q
    ||||| ||||||||||||||||||||||||||||    
T  25479644 ttcattagttgttttcagcttattttcataagct 25479611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 273
Target Start/End: Original strand, 44032065 - 44032146
Alignment:
Q  192 ttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataaa 273  Q
    ||||| ||||||| |||| | | ||| ||||||||| | ||| |||||||||  ||||||| |||||||||||||| |||||    
T  44032065 ttatagcttatatgaaaacaatttgactttattttagcttttgttatagaaacggcttatacataaacacttatatgataaa 44032146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 264
Target Start/End: Complemental strand, 45804274 - 45804209
Alignment:
Q  199 ttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacactta 264  Q
    |||||| |||||||| ||| |||||||||  |||||||||||||||| ||| || |||| ||||||    
T  45804274 ttatatgaaaatagtttgactttattttattatttattatagaaataacttttatataagcactta 45804209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 179
Target Start/End: Original strand, 46252689 - 46252722
Alignment:
Q  146 ttcataagttgttttcagcttattttcataagct 179  Q
    |||||||||||||||||| |||||||||||||||    
T  46252689 ttcataagttgttttcaggttattttcataagct 46252722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 267
Target Start/End: Original strand, 46499926 - 46499995
Alignment:
Q  198 cttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatat 267  Q
    |||| ||||||| | | ||| ||||||||| | ||| |||||||||||||||||| |||| |||||||||    
T  46499926 cttaaataaaaacaatttgactttattttatcttttcttatagaaatagcttatagataagcacttatat 46499995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 179
Target Start/End: Original strand, 48748322 - 48748355
Alignment:
Q  146 ttcataagttgttttcagcttattttcataagct 179  Q
    ||||||||||||||||||||||||| ||||||||    
T  48748322 ttcataagttgttttcagcttatttccataagct 48748355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 180
Target Start/End: Original strand, 39347976 - 39348008
Alignment:
Q  148 cataagttgttttcagcttattttcataagctt 180  Q
    ||||||||||||||||||||||| |||||||||    
T  39347976 cataagttgttttcagcttatttccataagctt 39348008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 43722308 - 43722368
Alignment:
Q  119 gagcttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataagct 179  Q
    ||||||||||||| |||| ||  ||| ||| || ||||||||||||||||||| |||||||    
T  43722308 gagcttatgaaaaaaacttatgacatgttcttatgttgttttcagcttatttttataagct 43722368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 176
Target Start/End: Complemental strand, 45975755 - 45975723
Alignment:
Q  144 tattcataagttgttttcagcttattttcataa 176  Q
    |||||||||| ||||||||||||||||||||||    
T  45975755 tattcataagctgttttcagcttattttcataa 45975723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 300
Target Start/End: Complemental strand, 5993 - 5915
Alignment:
Q  222 attttaccatttattatagaaatagcttataaataaacacttatataataaatgattatgctataaacacttaattaag 300  Q
    |||||| | ||| |||| ||||| | ||||| |||||||||||||| ||||||| |||||||||||||| || ||||||    
T  5993 attttatcttttgttattgaaattgtttatacataaacacttatatgataaatgtttatgctataaacagttgattaag 5915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 10598 - 10654
Alignment:
Q  120 agcttatgaaaacaactaattgcatattcataagttgttttcagcttattttcataa 176  Q
    |||||||| |||||||||||  ||| | ||||||||||||||||||||||| |||||    
T  10598 agcttatgtaaacaactaatgacatgtccataagttgttttcagcttatttccataa 10654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0608 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 122 - 173
Target Start/End: Original strand, 9620 - 9671
Alignment:
Q  122 cttatgaaaacaactaattgcatattcataagttgttttcagcttattttca 173  Q
    ||||||||||||||| ||| ||| |||||||| |||||| ||||||||||||    
T  9620 cttatgaaaacaacttattacatgttcataagctgtttttagcttattttca 9671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0584 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0584
Description:

Target: scaffold0584; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 180
Target Start/End: Original strand, 1336 - 1374
Alignment:
Q  142 catattcataagttgttttcagcttattttcataagctt 180  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  1336 catattcataagttgtttttatcttattttcataagctt 1374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0446 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 180
Target Start/End: Original strand, 5462 - 5500
Alignment:
Q  142 catattcataagttgttttcagcttattttcataagctt 180  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  5462 catattcataagttgtttttatcttattttcataagctt 5500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 296
Target Start/End: Complemental strand, 11028 - 10963
Alignment:
Q  231 tttattatagaaatagcttataaataaacacttatataataaatgattatgctataaacacttaat 296  Q
    |||||| ||||||||| ||||| |||||||||||||| | |||   |||| |||||||||||||||    
T  11028 tttattctagaaatagtttatatataaacacttatatgacaaactcttatactataaacacttaat 10963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 6801 - 6756
Alignment:
Q  219 tttattttaccatttattatagaaatagcttataaataaacactta 264  Q
    ||||||||||| ||| ||||| |||||||||||| |||||||||||    
T  6801 tttattttaccttttgttataaaaatagcttatatataaacactta 6756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 300
Target Start/End: Complemental strand, 4936 - 4868
Alignment:
Q  232 ttattatagaaatagcttataaataaacacttatataataaatgattatgctataaacacttaattaag 300  Q
    ||||||||||||||||||||| |||  ||||||||| ||| |   ||||||||||| | ||||||||||    
T  4936 ttattatagaaatagcttatatataggcacttatatgatagacatttatgctataagcgcttaattaag 4868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 287
Target Start/End: Complemental strand, 27589 - 27485
Alignment:
Q  183 gaaaacaacttatatcttatataaaaatagtgtgattttattttaccatttattatagaaatagcttataaataaacacttatataataaatgattatgc 282  Q
    ||||||||||||||  |||||| |||| | | ||| ||||||||| | | | ||||||||||| |||||| |||| |||||| || ||||  | ||||||    
T  27589 gaaaacaacttatagtttatatgaaaacaatttgactttattttatcttctgttatagaaataacttatacataagcacttacatgataagagcttatgc 27490  T
Q  283 tataa 287  Q
    |||||    
T  27489 tataa 27485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University