View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21088_low_5 (Length: 366)
Name: NF21088_low_5
Description: NF21088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21088_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 165 - 356
Target Start/End: Original strand, 30274128 - 30274319
Alignment:
| Q |
165 |
tcggttctgctatgtttccagctgcatcagaatacaattttctgatatttgcttctctccagtcatgtaacagctgccttgctcgaactgtaatggcctg |
264 |
Q |
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| T |
30274128 |
tcggttctgccatgtttccagctgcatcagaatacaattttctgatatttgcttctctccagtcatgtaacagctgccttgctcgaactgtaatggcctg |
30274227 |
T |
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| Q |
265 |
gcacgtctctgaaatgttctgccaaactcttagattctgactcttccataagcaccgtaaattcatagcaaactattcggctttctcctttg |
356 |
Q |
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| T |
30274228 |
gcacatctctgaaatgttctgccaaactcttagattctgactcttccataaccaccgtaaattcatagcaaactattcggctttctcctttg |
30274319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 20 - 133
Target Start/End: Original strand, 30274013 - 30274126
Alignment:
| Q |
20 |
catagctcaacatcaacacggtttaaagcttccgaaaacaccccatctatattacattttaacctcccttgctgcggttttacccacttaacttgtgatg |
119 |
Q |
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| T |
30274013 |
catagctcaacaccaacacggtttaaagcttccgaaaacgccccatctatattacattttaacctcccttgctgcggttttgcccacttaacttgtgatg |
30274112 |
T |
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| Q |
120 |
gcatcaaactttgc |
133 |
Q |
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| T |
30274113 |
gcatcaaactttgc |
30274126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 209 - 354
Target Start/End: Original strand, 27040291 - 27040436
Alignment:
| Q |
209 |
atatttgcttctctccagtcatgtaacagctgccttgctcgaactgtaatggcctggcacgtctctgaaatgttctgccaaactcttagattctgactct |
308 |
Q |
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| T |
27040291 |
atatttgcttctctccactcaactaacatctgttgtgctcgagcagaaatagcctggcatgtttctgaaatattctgccatattcgaagattccgactct |
27040390 |
T |
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| Q |
309 |
tccataagcaccgtaaattcatagcaaactattcggctttctcctt |
354 |
Q |
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| T |
27040391 |
tccataaactccataaattcatcgcaaactgttcgaatttctcctt |
27040436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 352
Target Start/End: Original strand, 14150894 - 14150974
Alignment:
| Q |
272 |
tctgaaatgttctgccaaactcttagattctgactcttccataagcaccgtaaattcatagcaaactattcggctttctcc |
352 |
Q |
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|||||||| |||| ||| |||| || ||| ||||||||||||| | || ||||||||||||||||| || ||||||||| |
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| T |
14150894 |
tctgaaatattctcccatactcgtaagttccgactcttccataaactccataaattcatagcaaactgctcagctttctcc |
14150974 |
T |
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