View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21089_high_1 (Length: 379)
Name: NF21089_high_1
Description: NF21089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21089_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 21 - 372
Target Start/End: Original strand, 12224132 - 12224489
Alignment:
| Q |
21 |
atggagacatgctcaagttattcgctcaagcggtgcaactccctctacttctgatccacatggaccatctcttatagcttctcaccgatgggcaaaaatg |
120 |
Q |
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|||||||| ||||||||||||||||||| | |||| |||||||| |||||||||||||||||| || |||||||||||||||||| ||||||||||||| |
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| T |
12224132 |
atggagacgtgctcaagttattcgctcaggtggtgaaactccctttacttctgatccacatgggccgtctcttatagcttctcactgatgggcaaaaata |
12224231 |
T |
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| Q |
121 |
ggcccttggaaggtataaatgcaatatatatgactcg---------ttgttcaataagctagaacttagaatgtgtcttagagatgaagaaggaaaattt |
211 |
Q |
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| T |
12224232 |
ggcccttggaa---ataaatgcaatatatatgtctcgttctcctcgttgttcaacaaggtaggacttagaatgtgtcttagagatgaagaaggaaaattt |
12224328 |
T |
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| Q |
212 |
atgattgcataaactacttggttctccccattttgtgacgtcgatgcaacaagtttatatacgacacttgattgggtggcaaaccttcagttcaataatg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
12224329 |
atgattgcataaactacttggttctccccattttgtgacgtcgatgcaacaagtttatatacgacacttgattgggtgccaaaccttcagttcaataatg |
12224428 |
T |
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| Q |
312 |
tagattttgtgttagattctaagaaggttgttattcttttaggacatatattgatgatgtc |
372 |
Q |
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| T |
12224429 |
tagattttctgttagattctaagaaggttgttattcttttaggacatatattgatgatgtc |
12224489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 263 - 342
Target Start/End: Complemental strand, 23316356 - 23316277
Alignment:
| Q |
263 |
agtttatatacgacacttgattgggtggcaaaccttcagttcaataatgtagattttgtgttagattctaagaaggttgt |
342 |
Q |
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| T |
23316356 |
agtttataaacggaacttgattgggtggtaaatctttagttccataatgtagattttgtgttcgactctaagaaggttgt |
23316277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 263 - 372
Target Start/End: Complemental strand, 38246311 - 38246201
Alignment:
| Q |
263 |
agtttatatacgacacttgattgggtggcaaaccttcagttcaataatgtagattttgtgttagattctaagaaggttgtt-attcttttaggacatata |
361 |
Q |
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||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||| ||||| |||| || |
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| T |
38246311 |
agtttatgtacgacacttgattgggtggcaaaccttcagtttgataatgtagactttgtgttagattctaagaaggttgttgattcctttagaacatgta |
38246212 |
T |
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| Q |
362 |
ttgatgatgtc |
372 |
Q |
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| T |
38246211 |
taaatgatgtc |
38246201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 290 - 369
Target Start/End: Original strand, 46210682 - 46210762
Alignment:
| Q |
290 |
gcaaaccttcagttcaataatgtagattttgtgttagattctaagaaggttgt-tattcttttaggacatatattgatgat |
369 |
Q |
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||||||||||| ||| ||||||| |||||||| |||||||||||||||||||| ||| ||||||||||||||| |||||| |
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| T |
46210682 |
gcaaaccttcatttcgataatgttgattttgttttagattctaagaaggttgtcgattattttaggacatatatagatgat |
46210762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 38246570 - 38246489
Alignment:
| Q |
19 |
gaatggagacatgctcaagttattcgctcaagcggtgcaactccctctacttctgatccacatggaccatctcttatagctt |
100 |
Q |
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| T |
38246570 |
gaatggagacatgcacaagtcattcgtttaggtagtgtaactccctctagttctgatccacatgggccgactcttatagctt |
38246489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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