View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21089_high_3 (Length: 290)
Name: NF21089_high_3
Description: NF21089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21089_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 40 - 272
Target Start/End: Original strand, 43791300 - 43791532
Alignment:
| Q |
40 |
tctggatcaatctctacaatatttcatccaatggatcacttcgtctatactaagaccatcaatattacatttaatcaacacccaaaacctcgagttatag |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
43791300 |
tctggatcaatctctacaatatttcatccaatggatcacttcgtctatactaagaccatcaatattacatttaatcaacagccaaaacctctagttatag |
43791399 |
T |
|
| Q |
140 |
ttcaaaaagctcgaatcatctagtgaataaactcaagcttgaatgtccagtccttaaatcaatcctctagaccaagtgtattgtcgagtagaagaaatgt |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43791400 |
ttcaaaaagctcgaatcatctagtgaataaactcaagcttgaatgtccagtccttaaatcaatcctctagaccaagtgtattgtcgagtagaagaaatgt |
43791499 |
T |
|
| Q |
240 |
attcgaggaattcaagttataatctatactaaa |
272 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| |
|
|
| T |
43791500 |
atttgaggaattcaagttataatctatactaaa |
43791532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University