View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21089_high_5 (Length: 254)
Name: NF21089_high_5
Description: NF21089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21089_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 6 - 235
Target Start/End: Complemental strand, 12562240 - 12562013
Alignment:
| Q |
6 |
aatttggctgatgaatttgaacagagaaaaatgagcaaaataagaattgatattagaaaaaacacacactnnnnnnntgattatggtccatttggatcct |
105 |
Q |
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| T |
12562240 |
aatttggctgatgaatttgaacagagaaaaatgagcaaaataagaattgatattagaaaaaacacacacaaaaaaaatgattatggtccatttggatcct |
12562141 |
T |
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| Q |
106 |
aatcaatcccttgccaactcagtttggaacattacatccaaacttaaaagtgtaggtatagaacattttttcttctagagacatactgtatcttaaaatt |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
12562140 |
aatcaatcccttgccaactcagtttggaacattacatccaaac-tcaaagtgtaggtatagaacattttttcttctagagacatattgtatcttaaaatt |
12562042 |
T |
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| Q |
206 |
caaaaattctacgtattcagttattcgtat |
235 |
Q |
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| T |
12562041 |
c-aaaattctacgtattcacttattcgtat |
12562013 |
T |
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