View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2108_high_15 (Length: 247)
Name: NF2108_high_15
Description: NF2108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2108_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 20361563 - 20361344
Alignment:
| Q |
1 |
atcgaggggtacaataccgccagatatatcgcaatcaagtggagggcagatagcatcgtaaacctggtttgtgttgtccagaatcaatcatcaaaattaa |
100 |
Q |
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| T |
20361563 |
atcgaggggtacaataccgccagatatatcgcaatcaagtggaggggagatagcatcgtaaacctggtttgtgttgtccagaatca---atcaaaattaa |
20361467 |
T |
|
| Q |
101 |
ttaagagattgtttataagtgaaacaaacaacatgaaattgaaattgaaattgaaattgatagatgcctacacttagaccgctacagagctcattatact |
200 |
Q |
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| T |
20361466 |
ttaagagattgtttataggtgaaacaaacaaca------------------tgaaattgatagatgcctacacttagaccgctacagagctcattatact |
20361385 |
T |
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| Q |
201 |
cacgaactttagtctcacgatccaaccaagccttgttcata |
241 |
Q |
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| T |
20361384 |
cacgaactttagtctcacgatccaaccaagccttgttcata |
20361344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 32194658 - 32194566
Alignment:
| Q |
146 |
tgaaattgaaattgatagatgcctacacttagaccgctacagagctcattatactcacgaactttagtctcacgatccaaccaagccttgttc |
238 |
Q |
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| T |
32194658 |
tgaaattgaagttgatagatgcctacacttagatcacgagagagctcattatactcaccaactttagcctcaccatccaaccaagccttgttc |
32194566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 234
Target Start/End: Complemental strand, 21549221 - 21549133
Alignment:
| Q |
146 |
tgaaattgaaattgatagatgcctacacttagaccgctacagagctcattatactcacgaactttagtctcacgatccaaccaagcctt |
234 |
Q |
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|||||||||||||||||||||||||||||||| |||| || | | ||||| ||| ||| ||||| |||||||||| ||||||||| |
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| T |
21549221 |
tgaaattgaaattgatagatgcctacacttagtttgctagagcgatttttatagtcaagaattttagcctcacgatccttccaagcctt |
21549133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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