View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2108_high_17 (Length: 227)

Name: NF2108_high_17
Description: NF2108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2108_high_17
NF2108_high_17
[»] chr2 (3 HSPs)
chr2 (43-227)||(11814568-11814751)
chr2 (83-160)||(31212847-31212924)
chr2 (139-198)||(157973-158033)
[»] chr8 (4 HSPs)
chr8 (93-223)||(35318810-35318941)
chr8 (138-198)||(11384744-11384804)
chr8 (99-152)||(7940314-7940367)
chr8 (95-155)||(11426085-11426145)
[»] chr3 (6 HSPs)
chr3 (98-190)||(29174526-29174618)
chr3 (108-198)||(23701816-23701907)
chr3 (108-198)||(23720271-23720362)
chr3 (108-198)||(23738727-23738818)
chr3 (138-198)||(29556423-29556484)
chr3 (138-190)||(6512465-6512517)
[»] chr1 (2 HSPs)
chr1 (93-209)||(32186637-32186754)
chr1 (96-190)||(1674625-1674720)
[»] scaffold0188 (1 HSPs)
scaffold0188 (138-198)||(6315-6376)
[»] chr7 (4 HSPs)
chr7 (128-182)||(37072286-37072340)
chr7 (81-155)||(44395812-44395886)
chr7 (138-198)||(15643482-15643543)
chr7 (81-189)||(27300179-27300286)
[»] chr4 (2 HSPs)
chr4 (81-155)||(5415780-5415854)
chr4 (138-198)||(53370277-53370338)
[»] chr5 (1 HSPs)
chr5 (91-162)||(31126580-31126652)


Alignment Details
Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 43 - 227
Target Start/End: Complemental strand, 11814751 - 11814568
Alignment:
Q  43 cacacactttatctttattataaatttattgtgctatcttttttcatgagaattgttcttctattttgcacttgtaacttttaagaatgttaatgatctt 142  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  11814751 cacacactttatctttattataaatttaatgtcctatcttttttcatg-gaattgttcttctattttgtacttgtaatttttaagaatgttaatgatctt 11814653  T
Q  143 atttataaaatttcaactttccatgtaaccattattatagataacaaattttgtttcatataagtttgagtttgcacataacaaa 227  Q
    ||||||||||||| ||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  11814652 atttataaaattttaactttctatgaaaccattattataggtaacaaattttgtttcatataagtttgagtttgcacataacaaa 11814568  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 31212924 - 31212847
Alignment:
Q  83 ttttcatgagaattgttcttctattttgcacttgtaacttttaagaatgttaatgatcttatttataaaatttcaact 160  Q
    ||||||| ||||||||| || |||||||||||||  |||||||| ||||||| |||||||| | ||| ||||| ||||    
T  31212924 ttttcattagaattgttattatattttgcacttgagacttttaacaatgttattgatcttaataatagaattttaact 31212847  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 157973 - 158033
Alignment:
Q  139 tcttatttataaaatttcaactttccatgtaaccattattatagataac-aaattttgttt 198  Q
    ||||||||||||||||| |||| | |||  ||||||||||||||||||| |||||||||||    
T  157973 tcttatttataaaattttaactcttcattgaaccattattatagataacaaaattttgttt 158033  T

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Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 93 - 223
Target Start/End: Complemental strand, 35318941 - 35318810
Alignment:
Q  93 aattgttcttctattttgcacttgtaacttttaagaatgttaatgatcttatttataaaatttcaactttccatgtaaccattattatagataac-aaat 191  Q
    |||||||||| |||||||| |||| || |||||| ||||||| |||||||||||||  ||||| |||| | |||| ||||||||||| || |||| ||||    
T  35318941 aattgttcttttattttgcgcttgaaatttttaacaatgttactgatcttatttatggaattttaactcttcatggaaccattattaaaggtaacaaaat 35318842  T
Q  192 tttgtttcatataagtttgagtttgcacataa 223  Q
    |||||||||| ||||||| | |||||| ||||    
T  35318841 tttgtttcatgtaagtttaaatttgcatataa 35318810  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 11384804 - 11384744
Alignment:
Q  138 atcttatttataaaatttcaactttccatgtaaccattattatagataacaaattttgttt 198  Q
    ||||||||||||||||||||||| |  ||  ||| ||||||||||||||||||||||||||    
T  11384804 atcttatttataaaatttcaactatttataaaactattattatagataacaaattttgttt 11384744  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 152
Target Start/End: Complemental strand, 7940367 - 7940314
Alignment:
Q  99 tcttctattttgcacttgtaacttttaagaatgttaatgatcttatttataaaa 152  Q
    |||| ||||||| ||||| || |||||| |||||||| ||||||||||||||||    
T  7940367 tcttttattttgtacttgaaatttttaataatgttaacgatcttatttataaaa 7940314  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 155
Target Start/End: Complemental strand, 11426145 - 11426085
Alignment:
Q  95 ttgttcttctattttgcacttgtaacttttaagaatgttaatgatcttatttataaaattt 155  Q
    |||||||||||||||| ||||  || |||||| ||||||| ||||||||||| || |||||    
T  11426145 ttgttcttctattttgaactttaaaattttaacaatgttagtgatcttatttttagaattt 11426085  T

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Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 98 - 190
Target Start/End: Original strand, 29174526 - 29174618
Alignment:
Q  98 ttcttctattttgcacttgtaacttttaagaatgttaatgatcttatttataaaatttcaactttccatgtaaccattattatagataacaaa 190  Q
    ||||||||||||||||||| |  |||||| |||||| ||||| |||||||||| ||||||||| | |||| |||||||||||||  |||||||    
T  29174526 ttcttctattttgcacttgaattttttaacaatgttcatgattttatttataatatttcaactcttcatgaaaccattattatatgtaacaaa 29174618  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 198
Target Start/End: Original strand, 23701816 - 23701907
Alignment:
Q  108 ttgcacttgtaacttttaagaatgttaatgatcttatttataaaatttcaactttccatgtaaccattattatagataac-aaattttgttt 198  Q
    ||||| ||| || |||||| ||||| | | |||||||||||| |||||||| | | |||| ||||||| ||||||||||| |||||||||||    
T  23701816 ttgcatttgaaatttttaacaatgtcactcatcttatttatagaatttcaattattcatgaaaccattgttatagataacaaaattttgttt 23701907  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 198
Target Start/End: Original strand, 23720271 - 23720362
Alignment:
Q  108 ttgcacttgtaacttttaagaatgttaatgatcttatttataaaatttcaactttccatgtaaccattattatagataac-aaattttgttt 198  Q
    ||||| ||| || |||||| ||||| | | |||||||||||| |||||||| | | |||| ||||||| ||||||||||| |||||||||||    
T  23720271 ttgcatttgaaatttttaacaatgtcactcatcttatttatagaatttcaattattcatgaaaccattgttatagataacaaaattttgttt 23720362  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 198
Target Start/End: Original strand, 23738727 - 23738818
Alignment:
Q  108 ttgcacttgtaacttttaagaatgttaatgatcttatttataaaatttcaactttccatgtaaccattattatagataac-aaattttgttt 198  Q
    ||||| ||| || |||||| ||||| | | |||||||||||| |||||||| | | |||| ||||||| ||||||||||| |||||||||||    
T  23738727 ttgcatttgaaatttttaacaatgtcactcatcttatttatagaatttcaattattcatgaaaccattgttatagataacaaaattttgttt 23738818  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 29556423 - 29556484
Alignment:
Q  138 atcttatttataaaatttcaactttccatgtaaccattattatagataac-aaattttgttt 198  Q
    |||||||||||| |||||||||| | |||| ||||||||||| || |||| |||||||||||    
T  29556423 atcttatttatagaatttcaactattcatgaaaccattattaaaggtaacaaaattttgttt 29556484  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 6512465 - 6512517
Alignment:
Q  138 atcttatttataaaatttcaactttccatgtaaccattattatagataacaaa 190  Q
    |||||||||||||||| | |||| | |||| |||||||||||||| |||||||    
T  6512465 atcttatttataaaatgttaactcttcatgaaaccattattataggtaacaaa 6512517  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 93 - 209
Target Start/End: Complemental strand, 32186754 - 32186637
Alignment:
Q  93 aattgttcttctattttgcacttgtaacttttaagaatgttaatgatcttatttataaaatttcaactttccatgtaaccattattatagataac-aaat 191  Q
    ||||||||||||||||||   ||| || |||||| ||||||||| |||||||||||| ||||| ||||||  ||| || |||| |||| | |||| ||||    
T  32186754 aattgttcttctattttgattttgaaatttttaacaatgttaataatcttatttatagaattttaactttttatggaatcattgttatggttaacaaaat 32186655  T
Q  192 tttgtttcatataagttt 209  Q
    |||||||||| |||||||    
T  32186654 tttgtttcatgtaagttt 32186637  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 190
Target Start/End: Original strand, 1674625 - 1674720
Alignment:
Q  96 tgttcttctattttgcacttgtaacttttaagaa-tgttaatgatcttatttataaaatttcaactttccatgtaaccattattatagataacaaa 190  Q
    ||||||| || |||||||||| || |||||| || | ||| | |||||||||||| ||||| |||||| |||| ||||||||| ||||||||||||    
T  1674625 tgttcttttactttgcacttgaaatttttaacaagtattactcatcttatttatagaattttaacttttcatggaaccattatcatagataacaaa 1674720  T

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Target: scaffold0188 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 6315 - 6376
Alignment:
Q  138 atcttatttataaaatttcaactttccatgtaaccattattatagataac-aaattttgttt 198  Q
    |||||||||||| ||||| |||| | |||| ||||||||||||||||||| |||||||||||    
T  6315 atcttatttatagaattttaactattcatgaaaccattattatagataacaaaattttgttt 6376  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 182
Target Start/End: Original strand, 37072286 - 37072340
Alignment:
Q  128 aatgttaatgatcttatttataaaatttcaactttccatgtaaccattattatag 182  Q
    ||||||| | ||||||||||||||||||||||| | |||  ||||||||||||||    
T  37072286 aatgttactcatcttatttataaaatttcaactcttcataaaaccattattatag 37072340  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 155
Target Start/End: Original strand, 44395812 - 44395886
Alignment:
Q  81 ttttttcatgagaattgttcttctattttgcacttgtaacttttaagaatgttaatgatcttatttataaaattt 155  Q
    |||||| || ||| |||||||||||||||| ||||  || |||||| ||||||| ||||||||||| || |||||    
T  44395812 tttttttatcagatttgttcttctattttgtactttaaatttttaacaatgttagtgatcttatttttagaattt 44395886  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 15643543 - 15643482
Alignment:
Q  138 atcttatttataaaatttcaactttccatgtaaccattattatagataac-aaattttgttt 198  Q
    |||||||||||| ||||| |||| | |||||||||||||| |||| |||| |||||||||||    
T  15643543 atcttatttatagaattttaactcttcatgtaaccattatgatagctaacaaaattttgttt 15643482  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 189
Target Start/End: Complemental strand, 27300286 - 27300179
Alignment:
Q  81 ttttttcatgagaattgttcttctattttgcacttgtaacttttaagaatgttaatgatcttatttataaaatttcaactttccatgtaaccattattat 180  Q
    ||||||||| | ||||||||| |||||||||||| | ||  ||||| ||||||| | || |||| | |||||||| |||| | |||| |||||||| |||    
T  27300286 ttttttcatcataattgttct-ctattttgcactggaaatctttaacaatgttactaatattatatttaaaatttgaactcttcatgaaaccattaatat 27300188  T
Q  181 agataacaa 189  Q
    || ||||||    
T  27300187 aggtaacaa 27300179  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 155
Target Start/End: Complemental strand, 5415854 - 5415780
Alignment:
Q  81 ttttttcatgagaattgttcttctattttgcacttgtaacttttaagaatgttaatgatcttatttataaaattt 155  Q
    |||||| || ||| |||||||||||||||| ||||  || |||||| ||||||| ||||||||||| || |||||    
T  5415854 tttttttatcagatttgttcttctattttgtactttaaatttttaacaatgttagtgatcttatttttagaattt 5415780  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 53370277 - 53370338
Alignment:
Q  138 atcttatttataaaatttcaactttccatgtaaccattattatagataacaaa-ttttgttt 198  Q
    |||||||||||| ||||| |||| | || |||||||||||||||| ||||||| ||||||||    
T  53370277 atcttatttatagaattttaactattcaagtaaccattattataggtaacaaacttttgttt 53370338  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 162
Target Start/End: Complemental strand, 31126652 - 31126580
Alignment:
Q  91 agaattgttcttctattttgcacttg-taacttttaagaatgttaatgatcttatttataaaatttcaacttt 162  Q
    |||||| ||||||||||||||||||| |   |||||| ||||||| |||| ||| ||||| ||||||||||||    
T  31126652 agaattattcttctattttgcacttgattttttttaacaatgttattgattttacttatagaatttcaacttt 31126580  T

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