View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2108_high_2 (Length: 599)
Name: NF2108_high_2
Description: NF2108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2108_high_2 |
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| [»] scaffold0047 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 523; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 19 - 591
Target Start/End: Complemental strand, 47367023 - 47366454
Alignment:
| Q |
19 |
ggaattctatgagagctttgaaaggaatggtcttctccctctaaatttttgctcctatggtgtaaatattttcttgaagatagtaatggagagtcgaatc |
118 |
Q |
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| T |
47367023 |
ggaattgtgtgagatctttgaaaggaatggtcttctccctctaaatttttgctcctatggtgtaaatattttcttgaagatagtaatggagagtcgaatc |
47366924 |
T |
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| Q |
119 |
tttcaacttcattttgtctctgaatttgtctaaattttagctgtcttcttccacaatcctccatttctctacagtgtgaaccaaaaactgagtctaaatc |
218 |
Q |
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| T |
47366923 |
tttcaacttcattttgtctctgaatttgtctaaattttagctgtcttcttccacaatcctccacttctctacagcgtgaaccgaaaactgagtctaaatc |
47366824 |
T |
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| Q |
219 |
ttcaagttctttactcttagaatgctgtgtgtctacccactgctccatccagtacttccatcttccaatttttctttctgattcagctgatttctgaaag |
318 |
Q |
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| T |
47366823 |
ttcaagttctttactcttagaatgctgtgtgtctacccactgctccatccagtacttccatcttccaatttttctttctgattcagctgatttctgaaag |
47366724 |
T |
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| Q |
319 |
gatttctcagttagtatgaaaattagtaagagtaaaactagtcttaagagcttcttaccctatggttatatgagtattcttttactctttctttcctaat |
418 |
Q |
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| T |
47366723 |
gatttctcagttagtatgaaaattagtaagagtaaaactaggcttaagagcttcttaccctatggttatatgagtattcttttactctttctttcctaat |
47366624 |
T |
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| Q |
419 |
aatagcttctttcttgcttatgctagaagaatctacctctgtcttcattaaaatgctgtcatcccactttcgctcactgttttcgtccatctgtaaatat |
518 |
Q |
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| T |
47366623 |
aatagcttctttcttgcttatgctagaagaatctacctctgtcttcattaaaatgctgtcatcccactttcgctcactgttttcgtccatctgtaaat-- |
47366526 |
T |
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| Q |
519 |
tattaaatgttacatttctaactgtacaagggatcagggttttcaaaaaatatcagtgaacattatctgtgct |
591 |
Q |
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| T |
47366525 |
-attaaatgttacatttctaactgtacaagggatcagggttttcaaaaaagatcagtgatcattatctgtgct |
47366454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 204 - 285
Target Start/End: Complemental strand, 39455468 - 39455390
Alignment:
| Q |
204 |
aactgagtctaaatcttcaagttctttactcttagaatgctgtgtgtctacccactgctccatccagtacttccatcttcca |
285 |
Q |
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| T |
39455468 |
aactgagtctaaatcttcaggttctttatttttagaatg--ttgtgtctacccactgcttcatcca-tacctccatcttcca |
39455390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 372 - 510
Target Start/End: Complemental strand, 16114 - 15976
Alignment:
| Q |
372 |
cttaccctatggttatatgagtattcttttactctttctttcctaataatagcttctttcttgcttatgctagaagaatctacctctgtcttcattaaaa |
471 |
Q |
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||||| ||||| ||| ||| ||||||||||| ||||||| || ||||||| ||||||||||| | |||| ||||| |||||||||| ||||| |||| |
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| T |
16114 |
cttactctatgattaaatgtgtattcttttattctttctctcttaataatgccttctttcttgatcatgcaagaagcatctacctcttccttcaataaag |
16015 |
T |
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| Q |
472 |
tgctgtcatcccactttcgctcactgttttcgtccatct |
510 |
Q |
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| T |
16014 |
tactgtcatcccactttctttcactgtttgagtccatct |
15976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 203 - 285
Target Start/End: Complemental strand, 16536 - 16454
Alignment:
| Q |
203 |
aaactgagtctaaatcttcaagttctttactcttagaatgctgtgtgtctacccactgctccatccagtacttccatcttcca |
285 |
Q |
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| T |
16536 |
aaactgagtctaaatcttcgagttctttgcttttagaaagttgtgtatctacccattgctccagccagtacctccatcttcca |
16454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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